Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48504 * 109.47105 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47679 * 240.00462 * 3 2 1 6 6 H 1.48500 * 109.47081 * 120.00311 * 3 2 1 7 7 C 1.38807 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99924 * 213.96837 * 7 2 1 9 9 N 1.36934 * 120.00420 * 33.96500 * 7 2 1 10 10 C 1.43460 * 118.94487 * 204.21484 * 9 7 2 11 11 C 1.53795 * 107.96370 * 273.61272 * 10 9 7 12 12 C 1.47142 * 111.84019 * 281.66554 * 11 10 9 13 13 N 1.48210 * 110.34212 * 58.29451 * 12 11 10 14 14 C 1.34770 * 119.97026 * 102.47091 * 13 12 11 15 15 O 1.21553 * 120.00132 * 352.31510 * 14 13 12 16 16 C 1.47863 * 120.00330 * 172.31686 * 14 13 12 17 17 C 1.39618 * 120.10918 * 23.45488 * 16 14 13 18 18 C 1.37977 * 119.98762 * 179.97438 * 17 16 14 19 19 C 1.38262 * 120.21721 * 359.97438 * 18 17 16 20 20 C 1.38921 * 120.22863 * 0.02562 * 19 18 17 21 21 N 1.40211 * 119.99720 * 179.97438 * 20 19 18 22 22 C 1.35219 * 126.05126 * 4.99426 * 21 20 19 23 23 C 1.35321 * 107.71055 * 180.02562 * 22 21 20 24 24 C 1.39921 * 107.93254 * 0.02562 * 23 22 21 25 25 N 1.30879 * 108.23983 * 359.71621 * 24 23 22 26 26 C 1.38597 * 120.00469 * 359.74331 * 20 19 18 27 27 C 1.43621 * 120.06215 * 282.49060 * 13 12 11 28 28 C 1.48859 * 118.93869 * 23.94843 * 9 7 2 29 29 H 0.97006 * 119.99819 * 185.91118 * 1 2 3 30 30 H 1.09002 * 109.75888 * 33.22670 * 10 9 7 31 31 H 1.08997 * 109.76405 * 153.94247 * 10 9 7 32 32 H 1.09004 * 109.00246 * 42.26789 * 11 10 9 33 33 H 1.08993 * 109.01098 * 161.05081 * 11 10 9 34 34 H 1.09002 * 109.32490 * 178.56114 * 12 11 10 35 35 H 1.09001 * 109.32148 * 298.20420 * 12 11 10 36 36 H 1.08002 * 120.00548 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.89232 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.88629 * 179.97438 * 19 18 17 39 39 H 1.07995 * 126.14400 * 0.02728 * 22 21 20 40 40 H 1.08000 * 126.03443 * 180.02562 * 23 22 21 41 41 H 1.08000 * 125.88061 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.10925 * 180.25859 * 26 20 19 43 43 H 1.09003 * 108.87519 * 211.44723 * 27 13 12 44 44 H 1.09006 * 108.87394 * 329.98821 * 27 13 12 45 45 H 1.08995 * 109.48092 * 260.62784 * 28 9 7 46 46 H 1.09003 * 109.47957 * 20.66055 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6966 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 2.9521 -1.2821 0.5221 9 7 1.5009 -2.2866 -0.6635 10 6 1.9005 -3.6019 -0.2531 11 6 3.2047 -3.9526 -0.9889 12 6 2.9554 -4.3602 -2.3806 13 7 2.2573 -3.2798 -3.1167 14 6 2.9441 -2.4922 -3.9678 15 8 4.1554 -2.5739 -4.0282 16 6 2.2243 -1.5287 -4.8280 17 6 0.9596 -1.0679 -4.4574 18 6 0.2904 -0.1684 -5.2617 19 6 0.8683 0.2797 -6.4351 20 6 2.1263 -0.1729 -6.8125 21 7 2.7076 0.2844 -8.0037 22 6 2.1995 1.2308 -8.8249 23 6 3.0582 1.3818 -9.8599 24 6 4.1260 0.4987 -9.6661 25 7 3.9197 -0.1551 -8.5512 26 6 2.8089 -1.0727 -6.0092 27 6 0.8495 -3.0710 -2.9236 28 6 0.5457 -2.0630 -1.7831 29 1 -0.4850 -0.8356 0.0865 30 1 2.0694 -3.6165 0.8237 31 1 1.1243 -4.3211 -0.5141 32 1 3.8592 -3.0809 -0.9861 33 1 3.7004 -4.7686 -0.4633 34 1 3.9059 -4.5740 -2.8696 35 1 2.3360 -5.2570 -2.3883 36 1 0.5055 -1.4147 -3.5409 37 1 -0.6881 0.1868 -4.9738 38 1 0.3396 0.9835 -7.0608 39 1 1.2747 1.7695 -8.6808 40 1 2.9400 2.0635 -10.6892 41 1 4.9768 0.3807 -10.3209 42 1 3.7888 -1.4225 -6.2989 43 1 0.4183 -2.6947 -3.8513 44 1 0.3818 -4.0248 -2.6793 45 1 -0.4736 -2.2095 -1.4260 46 1 0.6569 -1.0455 -2.1581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982214963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 137.699947 kcal Electronic energy + Delta-G solvation = -30290.822195 eV Core-core repulsion = 26377.599630 eV Total energy + Delta-G solvation = -3913.222565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.58181 -41.89263 -39.63170 -38.81305 -36.30139 -35.44174 -33.97334 -32.86930 -32.45803 -31.14429 -30.08049 -29.47606 -27.20186 -25.62860 -25.25399 -24.59269 -23.34245 -22.09895 -21.66507 -21.46485 -20.49469 -19.52163 -18.91692 -18.14916 -17.55866 -17.50134 -16.71802 -16.31175 -16.22797 -15.98786 -15.69116 -15.61749 -15.37709 -15.09888 -14.84749 -14.64089 -14.54784 -14.24086 -14.03506 -13.74814 -13.66929 -13.62378 -13.12309 -12.97780 -12.71539 -12.62088 -12.20253 -12.11123 -11.98208 -11.93256 -11.77805 -11.60720 -11.40762 -11.37271 -10.90993 -10.33588 -10.23287 -10.15573 -9.69613 -9.12860 -8.89726 -8.27462 -5.30095 -0.41534 -0.11186 1.07540 1.32281 1.50817 1.56082 1.70498 1.75531 1.85023 1.97052 2.59170 2.63837 3.07162 3.26443 3.48994 3.59911 3.72256 3.89342 3.90968 4.02612 4.04536 4.08083 4.10978 4.21140 4.28125 4.36880 4.42652 4.54541 4.62769 4.64245 4.72398 4.76302 4.78451 4.90834 4.94402 5.02077 5.07015 5.08598 5.13194 5.15281 5.23563 5.38099 5.50351 5.63931 5.69286 5.89462 6.13085 6.32224 6.43398 6.61860 7.01745 7.11545 7.82251 8.18527 8.96591 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003897 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.919061 B = 7183.500213 C = 8241.545725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.046 4.046 3 Si 1.076 2.924 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.284 1.284 7 C -0.364 4.364 8 H 0.028 0.972 9 N -0.604 5.604 10 C 0.160 3.840 11 C -0.155 4.155 12 C 0.127 3.873 13 N -0.576 5.576 14 C 0.551 3.449 15 O -0.587 6.587 16 C -0.122 4.122 17 C -0.148 4.148 18 C -0.088 4.088 19 C -0.104 4.104 20 C 0.139 3.861 21 N -0.338 5.338 22 C 0.048 3.952 23 C -0.262 4.262 24 C 0.051 3.949 25 N -0.348 5.348 26 C -0.087 4.087 27 C 0.059 3.941 28 C 0.126 3.874 29 H 0.261 0.739 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.184 0.816 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.216 0.784 40 H 0.187 0.813 41 H 0.216 0.784 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.041 0.959 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -1.810 -18.124 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.247 4.247 3 Si 0.904 3.096 4 H -0.203 1.203 5 H -0.230 1.230 6 H -0.210 1.210 7 C -0.494 4.494 8 H 0.046 0.954 9 N -0.327 5.327 10 C 0.033 3.967 11 C -0.196 4.196 12 C 0.006 3.994 13 N -0.304 5.304 14 C 0.341 3.659 15 O -0.470 6.470 16 C -0.125 4.125 17 C -0.165 4.165 18 C -0.107 4.107 19 C -0.124 4.124 20 C 0.046 3.954 21 N -0.114 5.114 22 C -0.093 4.093 23 C -0.290 4.290 24 C -0.136 4.136 25 N -0.167 5.167 26 C -0.108 4.108 27 C -0.066 4.066 28 C 0.001 3.999 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.200 0.800 37 H 0.193 0.807 38 H 0.195 0.805 39 H 0.233 0.767 40 H 0.205 0.795 41 H 0.233 0.767 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.059 0.941 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.271 -1.164 -17.340 17.684 hybrid contribution 0.782 -0.975 0.123 1.256 sum -2.489 -2.139 -17.217 17.527 Atomic orbital electron populations 1.70915 1.06857 1.29406 1.48221 1.26282 0.96310 1.02860 0.99212 0.83348 0.74769 0.75068 0.76397 1.20328 1.23006 1.21017 1.19882 1.02632 0.93216 1.33679 0.95361 1.43801 1.53031 1.01876 1.33965 1.20440 0.93966 0.86233 0.96048 1.21662 1.00559 1.00450 0.96946 1.20765 0.98144 0.88937 0.91504 1.47318 1.09912 1.32519 1.40673 1.18642 0.86527 0.80475 0.80216 1.90685 1.15323 1.69879 1.71078 1.19710 0.96419 1.00500 0.95905 1.23438 0.93372 0.96903 1.02820 1.21455 1.01661 0.94888 0.92652 1.21416 0.91837 1.00780 0.98399 1.17545 0.94059 0.98269 0.85492 1.45972 1.16960 1.30913 1.17522 1.23436 1.02030 0.92702 0.91115 1.22057 0.96241 1.07236 1.03481 1.24746 1.00737 0.94168 0.93930 1.77521 0.99884 1.25611 1.13722 1.20679 0.99601 0.97087 0.93475 1.22904 0.81006 1.02022 1.00630 1.22399 0.92568 0.97810 0.87117 0.92954 0.94789 0.91680 0.96002 0.89444 0.91192 0.87509 0.79971 0.80660 0.80535 0.76719 0.79535 0.76739 0.86570 0.86017 0.88100 0.94099 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.02 12.66 21.65 0.27 -50.75 16 2 C -0.05 -2.55 4.38 84.86 0.37 -2.18 16 3 Si 1.08 51.95 30.03 68.60 2.06 54.01 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.36 -20.18 9.05 84.03 0.76 -19.42 16 8 H 0.03 1.69 8.02 -2.91 -0.02 1.66 16 9 N -0.60 -28.10 2.41 -697.40 -1.68 -29.78 16 10 C 0.16 6.22 5.63 87.21 0.49 6.71 16 11 C -0.16 -5.62 5.64 29.04 0.16 -5.46 16 12 C 0.13 4.12 5.65 84.23 0.48 4.60 16 13 N -0.58 -20.71 2.46 -834.80 -2.05 -22.77 16 14 C 0.55 23.10 7.52 86.79 0.65 23.75 16 15 O -0.59 -28.87 16.08 -3.88 -0.06 -28.93 16 16 C -0.12 -4.48 5.69 -20.10 -0.11 -4.59 16 17 C -0.15 -4.58 7.18 22.54 0.16 -4.41 16 18 C -0.09 -2.06 10.02 22.21 0.22 -1.84 16 19 C -0.10 -2.24 9.45 22.44 0.21 -2.03 16 20 C 0.14 4.03 6.67 38.05 0.25 4.29 16 21 N -0.34 -9.16 3.80 -187.86 -0.71 -9.88 16 22 C 0.05 0.87 10.79 83.50 0.90 1.78 16 23 C -0.26 -4.24 10.81 22.00 0.24 -4.00 16 24 C 0.05 1.05 12.03 85.24 1.03 2.08 16 25 N -0.35 -10.44 11.87 -56.97 -0.68 -11.12 16 26 C -0.09 -3.16 9.20 22.65 0.21 -2.95 16 27 C 0.06 1.81 4.70 87.67 0.41 2.22 16 28 C 0.13 5.06 4.42 86.68 0.38 5.45 16 29 H 0.26 14.51 7.01 -92.70 -0.65 13.86 16 30 H 0.03 1.40 8.02 -2.39 -0.02 1.38 16 31 H 0.06 2.11 7.59 -2.39 -0.02 2.09 16 32 H 0.02 0.99 7.91 -2.38 -0.02 0.97 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.41 7.22 -2.39 -0.02 2.40 16 35 H 0.11 2.57 8.05 -2.39 -0.02 2.55 16 36 H 0.18 5.87 1.66 -3.25 -0.01 5.87 16 37 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 38 H 0.18 2.13 6.75 -2.91 -0.02 2.11 16 39 H 0.22 1.90 7.06 -2.91 -0.02 1.88 16 40 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.22 2.83 8.06 -2.91 -0.02 2.80 16 42 H 0.12 4.77 7.47 -2.91 -0.02 4.74 16 43 H 0.12 3.28 4.31 -2.40 -0.01 3.27 16 44 H 0.10 2.50 7.72 -2.38 -0.02 2.48 16 45 H 0.04 1.63 7.39 -2.39 -0.02 1.61 16 46 H 0.06 2.65 4.91 -2.39 -0.01 2.64 16 Total: -1.00 -80.02 362.85 5.11 -74.91 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.14 Total: 20.30 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 6.82 Total: 3.99 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.85 Total: -124.29 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.06 Total: 54.01 kcal Total: -80.02 5.11 -74.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982214963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.614 kcal (2) G-P(sol) polarization free energy of solvation -80.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds