Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00198 * 2 1 4 4 H 1.48494 * 109.47048 * 85.01615 * 3 2 1 5 5 H 1.48497 * 109.47099 * 325.01425 * 3 2 1 6 6 H 1.48499 * 109.47002 * 205.01907 * 3 2 1 7 7 C 1.38814 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99279 * 195.91192 * 7 2 1 9 9 N 1.36930 * 120.00525 * 15.91389 * 7 2 1 10 10 C 1.43464 * 118.94216 * 206.31266 * 9 7 2 11 11 C 1.53801 * 107.95801 * 273.60652 * 10 9 7 12 12 C 1.47136 * 111.83727 * 281.66469 * 11 10 9 13 13 N 1.48219 * 110.34310 * 58.29742 * 12 11 10 14 14 C 1.34784 * 119.96507 * 102.46779 * 13 12 11 15 15 O 1.21550 * 119.99977 * 351.69231 * 14 13 12 16 16 C 1.47856 * 119.99281 * 171.69470 * 14 13 12 17 17 C 1.39615 * 120.11767 * 24.10958 * 16 14 13 18 18 C 1.37967 * 119.98612 * 179.97438 * 17 16 14 19 19 C 1.38269 * 120.21775 * 359.97438 * 18 17 16 20 20 C 1.38902 * 120.22555 * 0.02562 * 19 18 17 21 21 N 1.40258 * 119.99235 * 180.02562 * 20 19 18 22 22 C 1.37102 * 126.47276 * 359.97438 * 21 20 19 23 23 C 1.34655 * 106.83543 * 179.97438 * 22 21 20 24 24 N 1.34128 * 108.19191 * 0.02562 * 23 22 21 25 25 C 1.30519 * 109.35089 * 359.74822 * 24 23 22 26 26 C 1.38576 * 120.01474 * 359.71828 * 20 19 18 27 27 C 1.43611 * 120.05978 * 282.48938 * 13 12 11 28 28 C 1.48864 * 118.93802 * 26.03461 * 9 7 2 29 29 H 0.97006 * 120.00006 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.76543 * 33.22098 * 10 9 7 31 31 H 1.09000 * 109.76503 * 153.93800 * 10 9 7 32 32 H 1.09003 * 109.00362 * 42.27328 * 11 10 9 33 33 H 1.08993 * 109.00811 * 161.05554 * 11 10 9 34 34 H 1.09005 * 109.32372 * 178.56458 * 12 11 10 35 35 H 1.08994 * 109.33032 * 298.20243 * 12 11 10 36 36 H 1.08004 * 120.00643 * 0.02580 * 17 16 14 37 37 H 1.08003 * 119.89454 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.88667 * 179.97438 * 19 18 17 39 39 H 1.08003 * 126.58424 * 0.02562 * 22 21 20 40 40 H 1.08003 * 125.90716 * 180.02562 * 23 22 21 41 41 H 1.08002 * 125.71642 * 180.25040 * 25 24 23 42 42 H 1.07999 * 120.11242 * 180.30074 * 26 20 19 43 43 H 1.09006 * 108.87589 * 211.44646 * 27 13 12 44 44 H 1.09000 * 108.87814 * 329.98092 * 27 13 12 45 45 H 1.08996 * 109.48124 * 260.63160 * 28 9 7 46 46 H 1.08996 * 109.48011 * 20.66618 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 1.3947 5 1 1.5043 2.6199 -0.8027 6 1 3.5964 1.4119 -0.5921 7 6 2.0101 -1.2022 -0.0005 8 1 3.0591 -1.2202 0.2559 9 7 1.3648 -2.3652 -0.3262 10 6 1.8615 -3.6049 0.1979 11 6 2.9534 -4.1192 -0.7553 12 6 2.3802 -4.7477 -1.9559 13 7 1.5173 -3.7842 -2.6797 14 6 1.9736 -3.1758 -3.7925 15 8 3.1382 -3.2986 -4.1182 16 6 1.0574 -2.3591 -4.6170 17 6 -0.0854 -1.7963 -4.0458 18 6 -0.9382 -1.0342 -4.8175 19 6 -0.6650 -0.8247 -6.1566 20 6 0.4695 -1.3805 -6.7341 21 7 0.7421 -1.1644 -8.0928 22 6 -0.0157 -0.4318 -8.9697 23 6 0.6073 -0.4851 -10.1623 24 7 1.7149 -1.2286 -10.0233 25 6 1.8094 -1.6370 -8.7873 26 6 1.3353 -2.1431 -5.9665 27 6 0.1957 -3.4980 -2.1962 28 6 0.1669 -2.3018 -1.2076 29 1 -0.4850 0.8401 -0.0004 30 1 2.2842 -3.4430 1.1895 31 1 1.0508 -4.3312 0.2571 32 1 3.5827 -3.2825 -1.0586 33 1 3.5671 -4.8510 -0.2302 34 1 3.1870 -5.0734 -2.6126 35 1 1.7841 -5.6113 -1.6614 36 1 -0.3015 -1.9567 -2.9998 37 1 -1.8217 -0.5992 -4.3740 38 1 -1.3364 -0.2276 -6.7558 39 1 -0.9352 0.0887 -8.7465 40 1 0.2729 -0.0110 -11.0733 41 1 2.6022 -2.2500 -8.3847 42 1 2.2204 -2.5719 -6.4128 43 1 -0.4487 -3.2696 -3.0452 44 1 -0.1923 -4.3802 -1.6870 45 1 -0.7356 -2.3511 -0.5984 46 1 0.1769 -1.3669 -1.7678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983552942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = 141.596730 kcal Electronic energy + Delta-G solvation = -30262.842273 eV Core-core repulsion = 26349.788686 eV Total energy + Delta-G solvation = -3913.053587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.43000 -40.60717 -38.51382 -37.13461 -34.74793 -34.21983 -32.91445 -31.40673 -31.11315 -29.72520 -29.15509 -27.97450 -25.76914 -24.07655 -23.98547 -23.47510 -22.15642 -21.14191 -20.64888 -19.87665 -19.44812 -18.22210 -17.22488 -16.46042 -16.17703 -16.04954 -15.61229 -15.42673 -14.90899 -14.72560 -14.36908 -14.10903 -13.99472 -13.91023 -13.68260 -13.59387 -13.27548 -13.04949 -12.83620 -12.59085 -12.38734 -12.14407 -11.63242 -11.50901 -11.17327 -11.00937 -10.80792 -10.60900 -10.53725 -10.35602 -10.26650 -10.16378 -9.95500 -9.81346 -9.52812 -9.13523 -8.84800 -8.59710 -8.32386 -8.18563 -6.81027 -5.92022 -3.33125 0.66957 0.94572 2.12180 2.49401 2.95438 3.05271 3.30479 3.33474 3.38817 3.43886 3.78354 4.40852 4.45777 4.49482 4.57287 4.71444 4.86916 5.03218 5.05644 5.21499 5.22550 5.27628 5.38726 5.46551 5.52087 5.56044 5.63882 5.69782 5.75581 5.84062 5.90748 5.93643 6.13165 6.24355 6.27540 6.30582 6.35890 6.43197 6.49075 6.61893 6.74209 6.75042 6.93687 7.10146 7.13648 7.23361 7.72158 7.78336 7.83876 8.32529 8.46286 9.08671 9.75712 10.20911 11.16509 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.003804 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.394497 B = 7358.684957 C = 8434.309492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.007 3.993 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.586 5.586 10 C 0.162 3.838 11 C -0.172 4.172 12 C 0.132 3.868 13 N -0.574 5.574 14 C 0.562 3.438 15 O -0.546 6.546 16 C -0.097 4.097 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.113 4.113 20 C 0.112 3.888 21 N -0.405 5.405 22 C -0.055 4.055 23 C -0.027 4.027 24 N -0.489 5.489 25 C 0.190 3.810 26 C -0.080 4.080 27 C 0.042 3.958 28 C 0.149 3.851 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.197 0.803 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.209 0.791 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 -6.031 -10.522 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.033 3.967 11 C -0.213 4.213 12 C 0.011 3.989 13 N -0.304 5.304 14 C 0.351 3.649 15 O -0.425 6.425 16 C -0.101 4.101 17 C -0.147 4.147 18 C -0.118 4.118 19 C -0.133 4.133 20 C 0.020 3.980 21 N -0.083 5.083 22 C -0.185 4.185 23 C -0.173 4.173 24 N -0.206 5.206 25 C -0.091 4.091 26 C -0.100 4.100 27 C -0.083 4.083 28 C 0.023 3.977 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.213 0.787 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.194 0.806 40 H 0.190 0.810 41 H 0.225 0.775 42 H 0.157 0.843 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.336 -6.181 -11.231 13.533 hybrid contribution -0.168 1.339 0.682 1.512 sum -4.504 -4.842 -10.549 12.450 Atomic orbital electron populations 1.69987 1.05077 1.25553 1.54746 1.24941 0.95304 0.98216 1.00683 0.86368 0.79533 0.83858 0.77687 1.21356 1.21477 1.20424 1.19177 0.92573 0.84943 1.41550 0.91705 1.43551 1.31751 1.02240 1.53249 1.20318 0.93622 0.88163 0.94550 1.21873 1.01140 1.00931 0.97314 1.20607 0.94137 0.90088 0.94094 1.47193 1.16027 1.42598 1.24545 1.18051 0.86939 0.79141 0.80787 1.90724 1.17076 1.62246 1.72454 1.19793 0.96307 1.00551 0.93434 1.23629 0.92330 0.93881 1.04824 1.21130 1.00455 0.97675 0.92511 1.21029 0.95837 1.00228 0.96191 1.17606 0.97341 1.01547 0.81545 1.43209 1.19987 1.37930 1.07175 1.22758 1.01185 1.03945 0.90651 1.22338 0.94075 1.03176 0.97748 1.70335 1.19866 1.14113 1.16292 1.25327 0.93095 1.02971 0.87741 1.20765 0.98562 0.97705 0.92968 1.23187 0.83774 1.01597 0.99792 1.22232 0.90505 0.94522 0.90395 0.93591 0.93361 0.94727 0.91085 0.92438 0.90440 0.91796 0.78732 0.84142 0.85128 0.80581 0.80961 0.77467 0.84333 0.88789 0.91509 0.93169 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.95 11.06 55.49 0.61 -23.33 16 2 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 3 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.54 9.25 -15.06 -0.14 -6.68 16 8 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 9 N -0.59 -13.17 2.53 -171.78 -0.43 -13.60 16 10 C 0.16 3.06 5.63 -5.23 -0.03 3.03 16 11 C -0.17 -2.93 5.64 -29.13 -0.16 -3.10 16 12 C 0.13 2.06 5.65 -5.91 -0.03 2.03 16 13 N -0.57 -9.74 2.46 -177.65 -0.44 -10.18 16 14 C 0.56 10.39 7.51 -12.32 -0.09 10.30 16 15 O -0.55 -11.48 16.10 5.32 0.09 -11.40 16 16 C -0.10 -1.57 5.68 -104.99 -0.60 -2.17 16 17 C -0.13 -1.92 7.21 -39.17 -0.28 -2.21 16 18 C -0.10 -1.23 10.02 -39.67 -0.40 -1.63 16 19 C -0.11 -1.32 9.47 -39.32 -0.37 -1.69 16 20 C 0.11 1.46 6.63 -83.63 -0.55 0.91 16 21 N -0.40 -5.11 2.99 -62.14 -0.19 -5.29 16 22 C -0.05 -0.60 10.85 -16.46 -0.18 -0.78 16 23 C -0.03 -0.31 11.85 -17.82 -0.21 -0.52 16 24 N -0.49 -6.81 11.24 -14.48 -0.16 -6.97 16 25 C 0.19 2.45 11.91 -89.64 -1.07 1.38 16 26 C -0.08 -1.16 9.01 -39.00 -0.35 -1.51 16 27 C 0.04 0.65 4.70 -4.40 -0.02 0.63 16 28 C 0.15 2.99 4.45 -1.56 -0.01 2.98 16 29 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 31 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 32 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.23 7.23 -51.93 -0.38 0.86 16 35 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 36 H 0.20 3.10 1.68 -52.61 -0.09 3.01 16 37 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.13 1.16 6.80 -52.49 -0.36 0.81 16 39 H 0.18 1.35 7.14 -52.48 -0.37 0.98 16 40 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.21 2.19 7.06 -52.49 -0.37 1.82 16 42 H 0.14 1.92 6.54 -52.49 -0.34 1.57 16 43 H 0.09 1.29 4.29 -51.94 -0.22 1.07 16 44 H 0.07 0.93 7.72 -51.93 -0.40 0.52 16 45 H 0.05 1.07 7.99 -51.93 -0.41 0.65 16 46 H 0.09 1.95 4.61 -51.93 -0.24 1.71 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -31.72 360.74 -10.34 -42.06 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.64 Total: 5.97 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -4.58 Total: 1.07 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.61 Total: -59.38 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.72 -10.34 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983552942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.660 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds