Wall clock time and date at job start Sat Apr 11 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00105 * 2 1 4 4 H 1.48502 * 109.46887 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47113 * 240.00116 * 3 2 1 6 6 H 1.48499 * 109.47210 * 120.00010 * 3 2 1 7 7 C 1.38812 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00437 * 214.86167 * 7 2 1 9 9 N 1.36937 * 119.99743 * 34.87010 * 7 2 1 10 10 C 1.43464 * 118.93910 * 203.05930 * 9 7 2 11 11 C 1.53799 * 107.95904 * 273.61002 * 10 9 7 12 12 C 1.47133 * 111.84152 * 281.66237 * 11 10 9 13 13 N 1.48213 * 110.33977 * 58.29653 * 12 11 10 14 14 C 1.34780 * 119.97019 * 102.47279 * 13 12 11 15 15 O 1.21516 * 119.99504 * 357.19827 * 14 13 12 16 16 C 1.48180 * 120.00304 * 177.20009 * 14 13 12 17 17 C 1.39122 * 119.69221 * 187.08689 * 16 14 13 18 18 C 1.39286 * 118.97033 * 179.97438 * 17 16 14 19 19 N 1.39915 * 120.81850 * 179.97438 * 18 17 16 20 20 C 1.36623 * 125.67973 * 359.69506 * 19 18 17 21 21 C 1.34810 * 108.19782 * 179.82928 * 20 19 18 22 22 C 1.40976 * 107.48233 * 0.42941 * 21 20 19 23 23 C 1.34814 * 107.47945 * 359.73002 * 22 21 20 24 24 C 1.39286 * 118.36187 * 0.02562 * 18 17 16 25 25 C 1.38324 * 119.27180 * 359.97438 * 24 18 17 26 26 N 1.31604 * 120.98138 * 359.74399 * 25 24 18 27 27 C 1.43622 * 120.06627 * 282.48905 * 13 12 11 28 28 C 1.48861 * 118.94412 * 22.78728 * 9 7 2 29 29 H 0.96999 * 120.00373 * 185.80249 * 1 2 3 30 30 H 1.08998 * 109.76189 * 33.22341 * 10 9 7 31 31 H 1.08998 * 109.76655 * 153.94120 * 10 9 7 32 32 H 1.09002 * 109.00858 * 42.27517 * 11 10 9 33 33 H 1.08998 * 109.00392 * 161.13447 * 11 10 9 34 34 H 1.08998 * 109.32982 * 178.56835 * 12 11 10 35 35 H 1.09005 * 109.32976 * 298.21136 * 12 11 10 36 36 H 1.07999 * 120.51088 * 359.95806 * 17 16 14 37 37 H 1.07999 * 125.89958 * 0.02562 * 20 19 18 38 38 H 1.08000 * 126.25943 * 180.16007 * 21 20 19 39 39 H 1.07997 * 126.26234 * 179.73837 * 22 21 20 40 40 H 1.08000 * 125.90780 * 179.97438 * 23 22 21 41 41 H 1.07993 * 120.36518 * 180.02562 * 24 18 17 42 42 H 1.08003 * 119.51296 * 179.97438 * 25 24 18 43 43 H 1.08994 * 108.87556 * 211.44686 * 27 13 12 44 44 H 1.09001 * 108.86802 * 329.88814 * 27 13 12 45 45 H 1.08995 * 109.47653 * 260.63062 * 28 9 7 46 46 H 1.09004 * 109.47673 * 20.66320 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9448 -1.2860 0.5352 9 7 1.5098 -2.2819 -0.6770 10 6 1.9233 -3.5990 -0.2865 11 6 3.2291 -3.9261 -1.0303 12 6 2.9805 -4.3161 -2.4270 13 7 2.2700 -3.2321 -3.1459 14 6 2.9470 -2.4256 -3.9871 15 8 4.1483 -2.5546 -4.1173 16 6 2.2266 -1.3817 -4.7532 17 6 2.9015 -0.6523 -5.7269 18 6 2.2096 0.3250 -6.4384 19 7 2.8504 1.0816 -7.4256 20 6 4.1620 0.9678 -7.7908 21 6 4.4045 1.8592 -8.7726 22 6 3.2039 2.5564 -9.0177 23 6 2.2701 2.0613 -8.1808 24 6 0.8644 0.5313 -6.1421 25 6 0.2630 -0.2346 -5.1596 26 7 0.9416 -1.1548 -4.5079 27 6 0.8607 -3.0400 -2.9467 28 6 0.5497 -2.0515 -1.7910 29 1 -0.4851 -0.8357 0.0849 30 1 2.0949 -3.6275 0.7895 31 1 1.1535 -4.3220 -0.5561 32 1 3.8751 -3.0483 -1.0163 33 1 3.7333 -4.7458 -0.5184 34 1 3.9317 -4.5136 -2.9212 35 1 2.3698 -5.2188 -2.4464 36 1 3.9458 -0.8409 -5.9278 37 1 4.8796 0.2801 -7.3684 38 1 5.3473 2.0143 -9.2760 39 1 3.0588 3.3430 -9.7432 40 1 1.2413 2.3836 -8.1178 41 1 0.2968 1.2803 -6.6742 42 1 -0.7798 -0.0776 -4.9265 43 1 0.4237 -2.6546 -3.8678 44 1 0.4027 -4.0020 -2.7169 45 1 -0.4672 -2.2132 -1.4337 46 1 0.6501 -1.0277 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989437428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:08 Heat of formation + Delta-G solvation = 117.238604 kcal Electronic energy + Delta-G solvation = -30433.680288 eV Core-core repulsion = 26519.570453 eV Total energy + Delta-G solvation = -3914.109835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.91955 -40.54099 -38.95968 -37.08787 -34.62343 -34.15038 -32.75888 -31.56191 -30.76130 -29.81828 -29.13741 -27.59412 -25.66385 -24.42000 -23.90815 -23.49303 -22.22805 -20.70841 -20.37528 -19.72858 -19.45572 -18.14154 -17.31326 -16.85297 -16.20113 -16.08719 -15.61428 -15.30481 -15.06590 -14.77161 -14.27394 -14.18694 -14.10065 -13.81550 -13.60462 -13.46572 -13.16135 -13.00593 -12.65286 -12.54098 -12.31941 -12.24468 -12.06740 -11.94735 -11.32174 -11.00748 -10.73280 -10.65668 -10.30541 -10.24054 -10.15209 -9.97637 -9.94754 -9.42755 -9.36437 -8.99189 -8.52735 -8.48226 -8.16048 -8.09144 -6.84836 -6.09043 -3.09631 0.49590 0.77187 2.23017 2.49425 2.78716 2.96154 3.29861 3.50048 3.55732 3.71585 3.87643 4.18612 4.38403 4.47810 4.64785 4.78739 4.81493 4.96908 5.07427 5.20830 5.22934 5.33969 5.43820 5.52791 5.54509 5.58572 5.63338 5.65418 5.75906 5.88300 6.00371 6.05391 6.12270 6.14936 6.20681 6.37977 6.47238 6.67281 6.67899 6.78474 6.80412 6.93040 6.98525 7.13747 7.19278 7.29024 7.65877 7.86828 8.12522 8.45523 8.61343 9.20557 9.92106 10.32249 11.19450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.004174 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.622771 B = 6705.794796 C = 7752.319836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.011 4.011 3 Si 1.039 2.961 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.053 0.947 9 N -0.596 5.596 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.128 3.872 13 N -0.557 5.557 14 C 0.571 3.429 15 O -0.547 6.547 16 C 0.124 3.876 17 C -0.140 4.140 18 C 0.178 3.822 19 N -0.398 5.398 20 C -0.010 4.010 21 C -0.189 4.189 22 C -0.188 4.188 23 C -0.014 4.014 24 C -0.180 4.180 25 C 0.128 3.872 26 N -0.444 5.444 27 C 0.067 3.933 28 C 0.150 3.850 29 H 0.268 0.732 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.145 0.855 42 H 0.174 0.826 43 H 0.123 0.877 44 H 0.048 0.952 45 H 0.026 0.974 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -1.818 -16.459 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.215 4.215 3 Si 0.869 3.131 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.488 4.488 8 H 0.070 0.930 9 N -0.318 5.318 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.007 3.993 13 N -0.286 5.286 14 C 0.357 3.643 15 O -0.426 6.426 16 C -0.014 4.014 17 C -0.162 4.162 18 C 0.077 3.923 19 N -0.071 5.071 20 C -0.135 4.135 21 C -0.213 4.213 22 C -0.212 4.212 23 C -0.139 4.139 24 C -0.202 4.202 25 C -0.030 4.030 26 N -0.157 5.157 27 C -0.058 4.058 28 C 0.024 3.976 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.184 0.816 41 H 0.162 0.838 42 H 0.191 0.809 43 H 0.140 0.860 44 H 0.067 0.933 45 H 0.044 0.956 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.594 -0.930 -15.722 15.760 hybrid contribution 0.685 -0.931 -0.317 1.199 sum 1.279 -1.861 -16.038 16.196 Atomic orbital electron populations 1.70796 1.06828 1.29934 1.46368 1.25447 0.96012 1.00836 0.99201 0.83907 0.75514 0.77291 0.76367 1.21157 1.22490 1.21921 1.19827 1.04278 0.91802 1.32871 0.92955 1.43815 1.52608 1.01333 1.34047 1.20255 0.92394 0.87360 0.96456 1.21832 1.02330 1.01380 0.95470 1.20668 0.97254 0.88067 0.93348 1.47243 1.10121 1.30792 1.40416 1.17696 0.86113 0.80662 0.79841 1.90723 1.13501 1.70604 1.67730 1.21113 0.90304 0.95998 0.94009 1.21656 1.02108 0.95732 0.96733 1.17994 0.92410 0.92221 0.89701 1.41588 1.09526 1.28278 1.27672 1.22060 0.84980 1.04898 1.01611 1.21026 0.99326 0.99841 1.01092 1.21023 0.93335 1.03769 1.03050 1.21953 1.00008 0.94626 0.97338 1.21997 0.93143 1.03388 1.01651 1.22962 1.00830 0.89457 0.89800 1.68191 1.06914 1.16501 1.24043 1.22825 0.79842 0.99601 1.03569 1.22010 0.91441 0.98710 0.85451 0.92188 0.93668 0.95103 0.91153 0.92527 0.90343 0.91782 0.83056 0.81465 0.83964 0.83994 0.81562 0.83776 0.80940 0.85987 0.93318 0.95602 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 12.63 55.49 0.70 -25.62 16 2 C -0.01 -0.33 4.36 -17.43 -0.08 -0.40 16 3 Si 1.04 26.04 30.04 -169.99 -5.11 20.94 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.36 -10.08 9.06 -15.06 -0.14 -10.21 16 8 H 0.05 1.53 8.02 -52.49 -0.42 1.11 16 9 N -0.60 -14.58 2.42 -171.78 -0.42 -14.99 16 10 C 0.16 3.41 5.63 -5.23 -0.03 3.38 16 11 C -0.17 -3.15 5.64 -29.13 -0.16 -3.32 16 12 C 0.13 2.17 5.68 -5.92 -0.03 2.14 16 13 N -0.56 -10.42 2.46 -177.43 -0.44 -10.85 16 14 C 0.57 11.22 7.65 -12.18 -0.09 11.13 16 15 O -0.55 -11.69 15.80 5.35 0.08 -11.60 16 16 C 0.12 2.16 6.62 -83.04 -0.55 1.61 16 17 C -0.14 -2.15 9.04 -38.86 -0.35 -2.50 16 18 C 0.18 2.39 6.65 -83.39 -0.55 1.83 16 19 N -0.40 -4.95 2.97 -60.74 -0.18 -5.13 16 20 C -0.01 -0.11 10.77 -16.63 -0.18 -0.29 16 21 C -0.19 -2.02 10.86 -39.76 -0.43 -2.45 16 22 C -0.19 -1.92 10.86 -39.76 -0.43 -2.35 16 23 C -0.01 -0.14 10.77 -16.63 -0.18 -0.32 16 24 C -0.18 -2.10 9.53 -39.16 -0.37 -2.47 16 25 C 0.13 1.65 11.17 -17.62 -0.20 1.45 16 26 N -0.44 -7.22 4.73 -9.87 -0.05 -7.27 16 27 C 0.07 1.20 4.79 -4.39 -0.02 1.18 16 28 C 0.15 3.35 4.96 -1.56 -0.01 3.34 16 29 H 0.27 7.87 7.04 -40.82 -0.29 7.59 16 30 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 31 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 32 H 0.07 1.58 7.91 -51.93 -0.41 1.16 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.33 7.15 -51.93 -0.37 0.95 16 35 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.15 2.24 6.44 -52.49 -0.34 1.90 16 37 H 0.17 1.74 7.09 -52.49 -0.37 1.37 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.17 1.29 7.08 -52.49 -0.37 0.92 16 41 H 0.14 1.21 6.83 -52.49 -0.36 0.85 16 42 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.12 2.05 4.70 -67.76 -0.32 1.73 16 44 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 45 H 0.03 0.60 7.41 -51.93 -0.38 0.22 16 46 H 0.08 1.95 5.80 -51.93 -0.30 1.65 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -33.71 365.57 -9.75 -43.46 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.05 Total: 3.81 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -3.81 Total: 1.75 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.38 Total: -63.87 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.11 Total: 20.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.71 -9.75 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989437428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.703 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds