Wall clock time and date at job start Sat Apr 11 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00105 * 2 1 4 4 H 1.48502 * 109.46887 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47113 * 240.00116 * 3 2 1 6 6 H 1.48499 * 109.47210 * 120.00010 * 3 2 1 7 7 C 1.38812 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00437 * 214.86167 * 7 2 1 9 9 N 1.36937 * 119.99743 * 34.87010 * 7 2 1 10 10 C 1.43464 * 118.93910 * 203.05930 * 9 7 2 11 11 C 1.53799 * 107.95904 * 273.61002 * 10 9 7 12 12 C 1.47133 * 111.84152 * 281.66237 * 11 10 9 13 13 N 1.48213 * 110.33977 * 58.29653 * 12 11 10 14 14 C 1.34780 * 119.97019 * 102.47279 * 13 12 11 15 15 O 1.21516 * 119.99504 * 357.19827 * 14 13 12 16 16 C 1.48180 * 120.00304 * 177.20009 * 14 13 12 17 17 C 1.39122 * 119.69221 * 187.08689 * 16 14 13 18 18 C 1.39286 * 118.97033 * 179.97438 * 17 16 14 19 19 N 1.39915 * 120.81850 * 179.97438 * 18 17 16 20 20 C 1.36623 * 125.67973 * 359.69506 * 19 18 17 21 21 C 1.34810 * 108.19782 * 179.82928 * 20 19 18 22 22 C 1.40976 * 107.48233 * 0.42941 * 21 20 19 23 23 C 1.34814 * 107.47945 * 359.73002 * 22 21 20 24 24 C 1.39286 * 118.36187 * 0.02562 * 18 17 16 25 25 C 1.38324 * 119.27180 * 359.97438 * 24 18 17 26 26 N 1.31604 * 120.98138 * 359.74399 * 25 24 18 27 27 C 1.43622 * 120.06627 * 282.48905 * 13 12 11 28 28 C 1.48861 * 118.94412 * 22.78728 * 9 7 2 29 29 H 0.96999 * 120.00373 * 185.80249 * 1 2 3 30 30 H 1.08998 * 109.76189 * 33.22341 * 10 9 7 31 31 H 1.08998 * 109.76655 * 153.94120 * 10 9 7 32 32 H 1.09002 * 109.00858 * 42.27517 * 11 10 9 33 33 H 1.08998 * 109.00392 * 161.13447 * 11 10 9 34 34 H 1.08998 * 109.32982 * 178.56835 * 12 11 10 35 35 H 1.09005 * 109.32976 * 298.21136 * 12 11 10 36 36 H 1.07999 * 120.51088 * 359.95806 * 17 16 14 37 37 H 1.07999 * 125.89958 * 0.02562 * 20 19 18 38 38 H 1.08000 * 126.25943 * 180.16007 * 21 20 19 39 39 H 1.07997 * 126.26234 * 179.73837 * 22 21 20 40 40 H 1.08000 * 125.90780 * 179.97438 * 23 22 21 41 41 H 1.07993 * 120.36518 * 180.02562 * 24 18 17 42 42 H 1.08003 * 119.51296 * 179.97438 * 25 24 18 43 43 H 1.08994 * 108.87556 * 211.44686 * 27 13 12 44 44 H 1.09001 * 108.86802 * 329.88814 * 27 13 12 45 45 H 1.08995 * 109.47653 * 260.63062 * 28 9 7 46 46 H 1.09004 * 109.47673 * 20.66320 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9448 -1.2860 0.5352 9 7 1.5098 -2.2819 -0.6770 10 6 1.9233 -3.5990 -0.2865 11 6 3.2291 -3.9261 -1.0303 12 6 2.9805 -4.3161 -2.4270 13 7 2.2700 -3.2321 -3.1459 14 6 2.9470 -2.4256 -3.9871 15 8 4.1483 -2.5546 -4.1173 16 6 2.2266 -1.3817 -4.7532 17 6 2.9015 -0.6523 -5.7269 18 6 2.2096 0.3250 -6.4384 19 7 2.8504 1.0816 -7.4256 20 6 4.1620 0.9678 -7.7908 21 6 4.4045 1.8592 -8.7726 22 6 3.2039 2.5564 -9.0177 23 6 2.2701 2.0613 -8.1808 24 6 0.8644 0.5313 -6.1421 25 6 0.2630 -0.2346 -5.1596 26 7 0.9416 -1.1548 -4.5079 27 6 0.8607 -3.0400 -2.9467 28 6 0.5497 -2.0515 -1.7910 29 1 -0.4851 -0.8357 0.0849 30 1 2.0949 -3.6275 0.7895 31 1 1.1535 -4.3220 -0.5561 32 1 3.8751 -3.0483 -1.0163 33 1 3.7333 -4.7458 -0.5184 34 1 3.9317 -4.5136 -2.9212 35 1 2.3698 -5.2188 -2.4464 36 1 3.9458 -0.8409 -5.9278 37 1 4.8796 0.2801 -7.3684 38 1 5.3473 2.0143 -9.2760 39 1 3.0588 3.3430 -9.7432 40 1 1.2413 2.3836 -8.1178 41 1 0.2968 1.2803 -6.6742 42 1 -0.7798 -0.0776 -4.9265 43 1 0.4237 -2.6546 -3.8678 44 1 0.4027 -4.0020 -2.7169 45 1 -0.4672 -2.2132 -1.4337 46 1 0.6501 -1.0277 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989437428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:07 Heat of formation + Delta-G solvation = 99.193431 kcal Electronic energy + Delta-G solvation = -30434.462786 eV Core-core repulsion = 26519.570453 eV Total energy + Delta-G solvation = -3914.892332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.83889 -41.76921 -40.23147 -38.74128 -36.24041 -35.37589 -34.24885 -32.87742 -32.49731 -30.79403 -29.99326 -29.24631 -27.28159 -25.73295 -25.45721 -24.85633 -23.56734 -21.78888 -21.54230 -21.21672 -20.52561 -19.49867 -19.03316 -18.23567 -17.61196 -17.14448 -16.91337 -16.53106 -16.33077 -16.15622 -15.86752 -15.65090 -15.37259 -15.11190 -15.01241 -14.66596 -14.52002 -14.48394 -14.21277 -13.82150 -13.64623 -13.31778 -13.14407 -13.05393 -12.88246 -12.79920 -12.59876 -12.09108 -12.04916 -11.94821 -11.85671 -11.53368 -11.43952 -11.32455 -10.48654 -10.35848 -10.16634 -9.59906 -9.43629 -9.30120 -8.86365 -8.27136 -5.25741 -0.60655 -0.27994 1.26643 1.46641 1.51306 1.56479 1.68586 1.71096 1.99652 2.01503 2.58981 2.68520 2.97136 3.13462 3.36331 3.50493 3.68499 3.75318 3.87001 3.97068 4.09407 4.19591 4.21602 4.24556 4.38446 4.43648 4.47094 4.51304 4.54570 4.64318 4.67836 4.75095 4.77724 4.92825 5.06789 5.10255 5.15923 5.23502 5.26085 5.32552 5.41583 5.48980 5.73033 5.87952 5.90834 6.09930 6.27643 6.32562 6.43575 6.60960 7.01790 7.15211 7.88169 8.25364 8.97011 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.004174 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.622771 B = 6705.794796 C = 7752.319836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.050 4.050 3 Si 1.079 2.921 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.280 1.280 7 C -0.364 4.364 8 H 0.030 0.970 9 N -0.610 5.610 10 C 0.159 3.841 11 C -0.153 4.153 12 C 0.123 3.877 13 N -0.562 5.562 14 C 0.560 3.440 15 O -0.578 6.578 16 C 0.096 3.904 17 C -0.149 4.149 18 C 0.176 3.824 19 N -0.408 5.408 20 C -0.041 4.041 21 C -0.189 4.189 22 C -0.194 4.194 23 C -0.020 4.020 24 C -0.160 4.160 25 C 0.123 3.877 26 N -0.466 5.466 27 C 0.078 3.922 28 C 0.158 3.842 29 H 0.257 0.743 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.197 0.803 41 H 0.185 0.815 42 H 0.204 0.796 43 H 0.140 0.860 44 H 0.073 0.927 45 H 0.015 0.985 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -1.353 -18.337 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.250 4.250 3 Si 0.907 3.093 4 H -0.206 1.206 5 H -0.231 1.231 6 H -0.206 1.206 7 C -0.494 4.494 8 H 0.048 0.952 9 N -0.333 5.333 10 C 0.032 3.968 11 C -0.194 4.194 12 C 0.003 3.997 13 N -0.290 5.290 14 C 0.347 3.653 15 O -0.459 6.459 16 C -0.041 4.041 17 C -0.172 4.172 18 C 0.074 3.926 19 N -0.082 5.082 20 C -0.166 4.166 21 C -0.213 4.213 22 C -0.217 4.217 23 C -0.145 4.145 24 C -0.182 4.182 25 C -0.035 4.035 26 N -0.179 5.179 27 C -0.047 4.047 28 C 0.033 3.967 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.184 0.816 40 H 0.214 0.786 41 H 0.202 0.798 42 H 0.221 0.779 43 H 0.157 0.843 44 H 0.091 0.909 45 H 0.033 0.967 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.558 -0.493 -17.604 17.620 hybrid contribution 1.076 -1.036 0.207 1.508 sum 0.518 -1.529 -17.397 17.471 Atomic orbital electron populations 1.70881 1.07115 1.29202 1.48378 1.26323 0.96245 1.03032 0.99433 0.83313 0.74702 0.74854 0.76437 1.20645 1.23104 1.20627 1.19901 1.03224 0.93486 1.32762 0.95217 1.44021 1.52880 1.01788 1.34652 1.20416 0.93993 0.86428 0.95995 1.21635 1.00311 1.00542 0.96909 1.20822 0.98159 0.88940 0.91798 1.47398 1.10385 1.30925 1.40246 1.18193 0.86052 0.81024 0.79986 1.90680 1.14757 1.71590 1.68831 1.20846 0.91182 0.96786 0.95271 1.21628 1.02013 0.96509 0.97010 1.18110 0.93111 0.91733 0.89642 1.41717 1.09779 1.28803 1.27854 1.22318 0.85362 1.06074 1.02799 1.21390 1.00454 0.99070 1.00341 1.21422 0.92864 1.04102 1.03355 1.22576 1.01488 0.93747 0.96642 1.22401 0.92347 1.02933 1.00506 1.23530 1.01914 0.88616 0.89443 1.67997 1.06555 1.18261 1.25067 1.22704 0.79858 0.99595 1.02506 1.21878 0.90280 0.98524 0.86040 0.93303 0.95070 0.92399 0.95759 0.89273 0.90387 0.87971 0.83765 0.81521 0.82244 0.81565 0.78603 0.79753 0.77926 0.84343 0.90872 0.96749 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 12.63 21.65 0.27 -53.89 16 2 C -0.05 -2.90 4.36 84.86 0.37 -2.53 16 3 Si 1.08 53.52 30.04 68.60 2.06 55.58 16 4 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.36 -20.97 9.06 84.03 0.76 -20.21 16 8 H 0.03 1.81 8.02 -2.91 -0.02 1.79 16 9 N -0.61 -30.26 2.42 -697.39 -1.69 -31.95 16 10 C 0.16 6.54 5.63 87.21 0.49 7.03 16 11 C -0.15 -5.64 5.64 29.04 0.16 -5.48 16 12 C 0.12 4.04 5.68 84.22 0.48 4.52 16 13 N -0.56 -20.80 2.46 -833.55 -2.05 -22.85 16 14 C 0.56 22.52 7.65 86.88 0.67 23.18 16 15 O -0.58 -25.67 15.80 -3.77 -0.06 -25.72 16 16 C 0.10 3.40 6.62 41.86 0.28 3.67 16 17 C -0.15 -4.65 9.04 22.73 0.21 -4.45 16 18 C 0.18 4.51 6.65 38.35 0.26 4.76 16 19 N -0.41 -9.54 2.97 -346.10 -1.03 -10.57 16 20 C -0.04 -0.94 10.77 83.16 0.90 -0.05 16 21 C -0.19 -3.74 10.86 22.15 0.24 -3.50 16 22 C -0.19 -3.43 10.86 22.15 0.24 -3.19 16 23 C -0.02 -0.37 10.77 83.16 0.90 0.53 16 24 C -0.16 -3.30 9.53 22.54 0.21 -3.09 16 25 C 0.12 2.93 11.17 84.75 0.95 3.88 16 26 N -0.47 -14.88 4.73 -185.13 -0.88 -15.75 16 27 C 0.08 2.73 4.79 87.67 0.42 3.15 16 28 C 0.16 7.10 4.96 86.68 0.43 7.53 16 29 H 0.26 15.41 7.04 -92.71 -0.65 14.76 16 30 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 31 H 0.06 2.07 7.59 -2.39 -0.02 2.05 16 32 H 0.02 1.10 7.91 -2.39 -0.02 1.08 16 33 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.08 2.59 7.15 -2.39 -0.02 2.57 16 35 H 0.10 2.59 8.05 -2.38 -0.02 2.58 16 36 H 0.14 4.55 6.44 -2.91 -0.02 4.53 16 37 H 0.17 3.65 7.09 -2.91 -0.02 3.63 16 38 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.20 2.18 7.08 -2.91 -0.02 2.16 16 41 H 0.19 2.22 6.83 -2.91 -0.02 2.20 16 42 H 0.20 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.14 4.49 4.70 -33.64 -0.16 4.33 16 44 H 0.07 2.20 7.73 -2.39 -0.02 2.18 16 45 H 0.01 0.68 7.41 -2.39 -0.02 0.66 16 46 H 0.05 2.48 5.80 -2.39 -0.01 2.46 16 Total: -1.00 -76.06 365.57 5.56 -70.50 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.97 Total: 18.87 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 7.95 Total: 15.78 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -5.37 Total: -135.01 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.06 Total: 55.58 kcal Total: -76.06 5.56 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989437428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.698 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds