Wall clock time and date at job start Sat Apr 11 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47130 * 240.00262 * 3 2 1 5 5 H 1.48501 * 109.46863 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47015 * 119.99857 * 3 2 1 7 7 C 1.38813 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99778 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99581 * 359.97438 * 7 2 1 10 10 C 1.47364 * 125.58461 * 0.04528 * 9 7 2 11 11 C 1.56221 * 104.46595 * 154.62337 * 10 9 7 12 12 C 1.54911 * 101.15485 * 38.11455 * 11 10 9 13 13 N 1.46502 * 112.33058 * 85.13125 * 12 11 10 14 14 C 1.34772 * 119.99860 * 64.08927 * 13 12 11 15 15 O 1.21776 * 120.00044 * 355.32156 * 14 13 12 16 16 C 1.41810 * 120.00035 * 175.32458 * 14 13 12 17 17 C 1.38531 * 126.78700 * 5.05940 * 16 14 13 18 18 N 1.32330 * 108.21134 * 180.02562 * 17 16 14 19 19 C 1.33194 * 109.82117 * 359.97438 * 18 17 16 20 20 C 1.40648 * 131.82239 * 180.02562 * 19 18 17 21 21 C 1.36289 * 119.38801 * 179.20523 * 20 19 18 22 22 C 1.40175 * 119.60318 * 0.64191 * 21 20 19 23 23 C 1.35266 * 120.12968 * 359.57403 * 22 21 20 24 24 N 1.35951 * 120.63326 * 0.02562 * 23 22 21 25 25 C 1.53583 * 109.57282 * 210.61147 * 12 11 10 26 26 C 1.54172 * 106.69504 * 112.45381 * 25 12 11 27 27 C 1.54758 * 104.36767 * 335.86350 * 26 25 12 28 28 C 1.46981 * 125.57313 * 179.97438 * 9 7 2 29 29 H 1.09006 * 111.81211 * 59.10289 * 28 9 7 30 30 H 0.96999 * 119.99510 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.36998 * 274.11204 * 10 9 7 32 32 H 1.09003 * 110.36884 * 36.32312 * 10 9 7 33 33 H 1.09003 * 112.18807 * 279.79301 * 11 10 9 34 34 H 1.09000 * 110.31673 * 155.63330 * 11 10 9 35 35 H 0.97000 * 120.00078 * 244.35508 * 13 12 11 36 36 H 1.08000 * 125.89052 * 0.03508 * 17 16 14 37 37 H 1.08007 * 120.30352 * 359.94664 * 20 19 18 38 38 H 1.07998 * 120.19627 * 180.20986 * 21 20 19 39 39 H 1.08003 * 119.93559 * 179.59694 * 22 21 20 40 40 H 1.07997 * 119.68412 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.01526 * 232.59624 * 25 12 11 42 42 H 1.09001 * 110.02090 * 353.99367 * 25 12 11 43 43 H 1.09007 * 110.80087 * 216.92139 * 26 25 12 44 44 H 1.09003 * 110.09768 * 94.45954 * 26 25 12 45 45 H 1.08998 * 110.67027 * 278.89909 * 27 26 25 46 46 H 1.09002 * 110.81146 * 155.83286 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5313 -0.0009 11 6 -0.3965 -3.9296 -0.6491 12 6 0.7720 -4.7539 -0.0534 13 7 0.4506 -5.3015 1.2669 14 6 -0.5402 -6.2055 1.3985 15 8 -1.2242 -6.5037 0.4361 16 6 -0.7864 -6.8094 2.6578 17 6 -0.1655 -6.5067 3.8586 18 7 -0.6735 -7.2905 4.7960 19 6 -1.5966 -8.0902 4.2646 20 6 -2.4128 -9.0862 4.8304 21 6 -3.3003 -9.7527 4.0395 22 6 -3.3769 -9.4461 2.6738 23 6 -2.5803 -8.4880 2.1473 24 7 -1.6982 -7.8128 2.9310 25 6 1.1917 -5.8454 -1.0490 26 6 2.6050 -5.4757 -1.5418 27 6 2.6979 -3.9456 -1.3287 28 6 1.9332 -3.7264 -0.0016 29 1 2.5745 -3.8807 0.8662 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5262 -2.4951 1.0181 32 1 -0.5987 -1.7489 -0.6065 33 1 -0.3357 -3.8964 -1.7369 34 1 -1.3587 -4.3267 -0.3256 35 1 0.9484 -5.0105 2.0469 36 1 0.6007 -5.7596 4.0045 37 1 -2.3454 -9.3122 5.8844 38 1 -3.9357 -10.5175 4.4610 39 1 -4.0737 -9.9755 2.0409 40 1 -2.6456 -8.2573 1.0943 41 1 1.1974 -6.8177 -0.5563 42 1 0.5069 -5.8604 -1.8970 43 1 2.7237 -5.7219 -2.5971 44 1 3.3569 -5.9907 -0.9438 45 1 2.2112 -3.4131 -2.1457 46 1 3.7368 -3.6307 -1.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991502674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:13 Heat of formation + Delta-G solvation = 88.765570 kcal Electronic energy + Delta-G solvation = -30019.400316 eV Core-core repulsion = 26104.055798 eV Total energy + Delta-G solvation = -3915.344518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.08233 -40.13363 -38.13395 -37.54443 -34.30982 -33.87260 -33.47077 -31.50572 -30.66075 -30.03709 -28.93740 -26.75124 -26.04208 -24.25359 -23.85597 -23.67794 -22.42303 -21.26060 -20.03567 -19.84549 -18.83577 -17.96779 -17.16171 -16.94792 -16.57339 -16.33186 -15.95352 -15.63600 -14.96034 -14.78233 -14.54721 -14.36562 -13.99671 -13.80573 -13.53115 -13.14436 -12.77429 -12.71937 -12.25438 -12.19087 -12.13225 -11.84904 -11.71049 -11.26502 -11.14914 -10.99478 -10.84775 -10.70926 -10.55664 -10.52829 -10.18057 -10.08674 -9.97008 -9.78647 -9.63993 -9.42468 -9.15688 -8.67279 -8.62818 -8.06907 -6.86304 -5.64341 -3.08037 0.46031 0.62493 2.14805 2.20948 3.24105 3.39855 3.44166 3.45750 3.46155 3.51377 3.90416 4.26636 4.47274 4.51682 4.56542 4.75893 4.83344 4.95913 5.14486 5.19209 5.21742 5.30650 5.51268 5.53607 5.64375 5.66844 5.79509 5.81855 5.85450 5.98150 6.06533 6.13212 6.18306 6.21831 6.25837 6.33885 6.38824 6.51989 6.58442 6.72201 6.76981 6.77671 6.97628 7.10239 7.48803 7.54657 7.63910 7.74752 7.87775 8.36463 8.39164 9.21296 9.82268 10.46237 11.37818 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.003018 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.982949 B = 9274.605023 C = 9948.546616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.152 3.848 11 C -0.142 4.142 12 C 0.164 3.836 13 N -0.692 5.692 14 C 0.597 3.403 15 O -0.552 6.552 16 C -0.136 4.136 17 C 0.107 3.893 18 N -0.496 5.496 19 C 0.238 3.762 20 C -0.091 4.091 21 C -0.088 4.088 22 C -0.150 4.150 23 C 0.079 3.921 24 N -0.323 5.323 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.129 4.129 28 C 0.163 3.837 29 H 0.046 0.954 30 H 0.252 0.748 31 H 0.012 0.988 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.192 0.808 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 -20.036 5.060 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.078 3.922 13 N -0.342 5.342 14 C 0.386 3.614 15 O -0.433 6.433 16 C -0.251 4.251 17 C -0.054 4.054 18 N -0.215 5.215 19 C -0.002 4.002 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.171 4.171 23 C -0.045 4.045 24 N 0.008 4.992 25 C -0.149 4.149 26 C -0.162 4.162 27 C -0.169 4.169 28 C 0.054 3.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.209 0.791 37 H 0.172 0.828 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.195 0.805 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.254 -19.942 5.137 21.028 hybrid contribution 0.455 1.029 -0.334 1.173 sum -3.799 -18.914 4.803 19.880 Atomic orbital electron populations 1.69793 1.04872 1.24838 1.57355 1.24784 0.95669 0.97676 1.02398 0.86175 0.78396 0.83184 0.77854 1.21185 1.21661 1.21266 1.18988 0.90419 0.82296 1.43253 0.90543 1.44499 1.01839 0.99125 1.86461 1.22236 0.84278 0.92903 0.97806 1.23561 0.96762 0.98095 0.99724 1.21669 0.96949 0.92470 0.81143 1.45555 1.35457 1.42294 1.10850 1.15323 0.80771 0.79610 0.85736 1.90783 1.48035 1.64019 1.40431 1.20010 1.03787 1.02647 0.98618 1.23242 0.98044 0.97412 0.86671 1.70507 1.11163 1.08735 1.31077 1.21124 0.99140 0.99650 0.80245 1.20329 0.95057 0.94267 1.01493 1.21155 0.97560 0.99267 0.93278 1.20953 1.01003 0.98779 0.96336 1.22116 0.90376 0.93496 0.98560 1.42423 1.23613 1.23380 1.09783 1.22241 0.96822 0.97425 0.98421 1.22342 0.96335 0.97317 1.00203 1.22904 1.00417 0.93852 0.99754 1.21772 0.91503 0.85823 0.95487 0.93648 0.93702 0.97022 0.87506 0.91255 0.91490 0.76483 0.79149 0.82800 0.83667 0.82764 0.80488 0.92353 0.91240 0.92181 0.92388 0.90735 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.07 55.49 0.56 -25.92 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.90 10.03 -15.06 -0.15 -6.05 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.42 3.07 -160.30 -0.49 -14.91 16 10 C 0.15 3.69 5.96 -1.84 -0.01 3.68 16 11 C -0.14 -2.88 5.83 -24.00 -0.14 -3.02 16 12 C 0.16 2.90 0.71 -129.37 -0.09 2.81 16 13 N -0.69 -11.03 5.21 -48.14 -0.25 -11.28 16 14 C 0.60 9.72 6.75 -14.90 -0.10 9.62 16 15 O -0.55 -10.07 13.22 5.12 0.07 -10.00 16 16 C -0.14 -2.01 6.83 -83.47 -0.57 -2.58 16 17 C 0.11 1.43 11.32 -17.23 -0.20 1.24 16 18 N -0.50 -7.05 11.25 -12.27 -0.14 -7.19 16 19 C 0.24 3.08 7.77 -156.06 -1.21 1.87 16 20 C -0.09 -0.83 10.10 -39.37 -0.40 -1.23 16 21 C -0.09 -0.60 10.07 -39.56 -0.40 -1.00 16 22 C -0.15 -1.14 10.00 -39.91 -0.40 -1.54 16 23 C 0.08 0.88 10.51 -16.79 -0.18 0.70 16 24 N -0.32 -4.36 2.96 -60.14 -0.18 -4.53 16 25 C -0.11 -1.76 5.33 -25.82 -0.14 -1.89 16 26 C -0.12 -1.81 6.82 -25.19 -0.17 -1.98 16 27 C -0.13 -2.28 6.26 -24.90 -0.16 -2.44 16 28 C 0.16 3.17 3.59 -65.63 -0.24 2.93 16 29 H 0.05 0.87 8.00 -51.93 -0.42 0.45 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.11 2.94 5.82 -51.93 -0.30 2.64 16 33 H 0.07 1.40 7.65 -51.93 -0.40 1.00 16 34 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 35 H 0.40 5.66 7.29 -40.82 -0.30 5.37 16 36 H 0.19 2.00 7.37 -52.49 -0.39 1.62 16 37 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.18 2.02 6.81 -52.49 -0.36 1.66 16 41 H 0.06 0.92 7.51 -51.93 -0.39 0.53 16 42 H 0.07 1.14 7.41 -51.93 -0.38 0.76 16 43 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -32.72 365.52 -10.79 -43.51 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.20 Total: 7.33 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.64 Total: 0.75 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.50 Total: -63.83 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.72 -10.79 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991502674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.279 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds