Wall clock time and date at job start Sat Apr 11 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47332 * 300.00590 * 3 2 1 6 6 H 1.48503 * 109.46810 * 60.00415 * 3 2 1 7 7 C 1.38816 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99875 * 213.39402 * 7 2 1 9 9 N 1.36940 * 119.99583 * 33.39583 * 7 2 1 10 10 C 1.49289 * 127.10724 * 8.57451 * 9 7 2 11 11 C 1.56318 * 106.46786 * 171.24249 * 10 9 7 12 12 C 1.52137 * 100.90469 * 336.88966 * 11 10 9 13 13 N 1.46500 * 111.49737 * 285.68519 * 12 11 10 14 14 C 1.34775 * 120.00013 * 288.52916 * 13 12 11 15 15 O 1.21780 * 119.99695 * 355.31290 * 14 13 12 16 16 C 1.41807 * 119.99812 * 175.31625 * 14 13 12 17 17 C 1.38524 * 126.78991 * 5.21512 * 16 14 13 18 18 N 1.32326 * 108.21258 * 179.86282 * 17 16 14 19 19 C 1.33201 * 109.81788 * 0.41401 * 18 17 16 20 20 C 1.40650 * 131.81640 * 179.73530 * 19 18 17 21 21 C 1.36286 * 119.38258 * 179.97438 * 20 19 18 22 22 C 1.40172 * 119.60734 * 359.97438 * 21 20 19 23 23 C 1.35260 * 120.12834 * 0.02562 * 22 21 20 24 24 N 1.35953 * 120.63503 * 359.97407 * 23 22 21 25 25 C 1.51363 * 121.49672 * 150.70271 * 12 11 10 26 26 C 1.55703 * 104.22750 * 218.08635 * 25 12 11 27 27 C 1.56281 * 105.93537 * 7.83028 * 26 25 12 28 28 C 1.42701 * 127.09907 * 188.88651 * 9 7 2 29 29 H 1.09003 * 108.16478 * 103.45178 * 28 9 7 30 30 H 0.96999 * 119.99748 * 185.93392 * 1 2 3 31 31 H 1.09001 * 110.04648 * 290.62302 * 10 9 7 32 32 H 1.08998 * 110.04989 * 52.09181 * 10 9 7 33 33 H 1.08999 * 111.27818 * 218.89882 * 11 10 9 34 34 H 1.08995 * 110.96616 * 94.75107 * 11 10 9 35 35 H 0.96999 * 119.99616 * 108.52614 * 13 12 11 36 36 H 1.08002 * 125.89150 * 359.97438 * 17 16 14 37 37 H 1.08002 * 120.30995 * 359.96338 * 20 19 18 38 38 H 1.07998 * 120.19627 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.93919 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.68183 * 180.02562 * 23 22 21 41 41 H 1.08996 * 110.10043 * 99.67301 * 25 12 11 42 42 H 1.08998 * 111.18820 * 337.03695 * 25 12 11 43 43 H 1.08994 * 110.15613 * 248.71167 * 26 25 12 44 44 H 1.09003 * 110.21762 * 126.97838 * 26 25 12 45 45 H 1.09003 * 110.97149 * 266.14325 * 27 26 25 46 46 H 1.08999 * 110.97134 * 142.37782 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 2.9565 -1.2796 0.5142 9 7 1.4951 -2.2899 -0.6538 10 6 0.3055 -2.3189 -1.5553 11 6 0.2812 -3.7375 -2.2114 12 6 1.7422 -4.1407 -2.0794 13 7 2.5857 -3.4244 -3.0394 14 6 2.5188 -3.7257 -4.3514 15 8 1.8216 -4.6501 -4.7290 16 6 3.2603 -2.9665 -5.2919 17 6 4.1689 -1.9587 -5.0129 18 7 4.6466 -1.5034 -6.1598 19 6 4.0866 -2.1597 -7.1747 20 6 4.2498 -2.0489 -8.5673 21 6 3.5346 -2.8654 -9.3914 22 6 2.6491 -3.8019 -8.8403 23 6 2.5060 -3.8932 -7.4984 24 7 3.2157 -3.0825 -6.6693 25 6 2.1534 -5.5914 -1.9475 26 6 3.3320 -5.5642 -0.9303 27 6 3.3927 -4.1016 -0.3831 28 6 1.9809 -3.6309 -0.6085 29 1 1.3229 -4.2089 0.0404 30 1 -0.4850 -0.8356 0.0868 31 1 -0.6048 -2.1561 -0.9782 32 1 0.4017 -1.5539 -2.3258 33 1 -0.0191 -3.6843 -3.2579 34 1 -0.3656 -4.4144 -1.6532 35 1 3.1922 -2.7332 -2.7308 36 1 4.4417 -1.6068 -4.0289 37 1 4.9354 -1.3234 -8.9797 38 1 3.6500 -2.7918 -10.4627 39 1 2.0799 -4.4519 -9.4885 40 1 1.8221 -4.6176 -7.0816 41 1 2.4913 -5.9741 -2.9105 42 1 1.3343 -6.1998 -1.5639 43 1 4.2664 -5.8169 -1.4313 44 1 3.1424 -6.2626 -0.1153 45 1 4.1001 -3.5004 -0.9542 46 1 3.6424 -4.0921 0.6779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991502676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:16 Heat of formation + Delta-G solvation = 80.953279 kcal Electronic energy + Delta-G solvation = -30587.121254 eV Core-core repulsion = 26671.437970 eV Total energy + Delta-G solvation = -3915.683285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.01252 -42.04197 -39.60767 -38.42307 -36.46966 -34.78124 -34.52936 -33.74670 -31.93817 -31.28508 -30.09122 -28.44327 -27.49339 -25.87208 -25.28265 -24.65720 -23.34078 -22.43553 -21.99438 -21.38776 -20.26161 -19.38446 -19.01105 -17.96329 -17.58837 -17.33812 -17.25342 -16.66369 -16.33419 -16.21035 -15.94244 -15.55969 -15.49326 -15.36656 -15.08282 -14.75689 -14.64484 -14.15896 -13.61487 -13.45346 -13.33965 -13.04323 -12.97861 -12.93439 -12.56950 -12.50829 -12.29768 -12.17536 -12.05623 -11.95833 -11.84804 -11.63551 -11.55739 -11.42173 -11.20550 -10.86390 -10.40851 -10.14869 -9.98591 -9.02764 -8.99899 -8.32931 -5.24066 -0.36571 -0.20695 1.20074 1.26621 1.59191 1.65456 1.81068 2.24682 2.36743 2.46591 2.63297 2.94415 3.08051 3.15936 3.42495 3.61624 3.71532 3.77033 3.83998 3.93282 3.97726 4.08857 4.11837 4.20223 4.26981 4.31254 4.40145 4.52059 4.56023 4.67403 4.79267 4.82870 4.86221 4.88128 5.00302 5.02064 5.04099 5.12318 5.13195 5.15004 5.29304 5.32618 5.44816 5.47818 5.64606 5.75004 5.87350 6.28647 6.45158 6.58174 6.88482 7.13461 7.71006 8.37557 9.01027 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011325 B = 0.004174 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.774583 B = 6706.854693 C = 8062.072076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.074 4.074 3 Si 1.104 2.896 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.338 4.338 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.115 4.115 12 C 0.146 3.854 13 N -0.681 5.681 14 C 0.601 3.399 15 O -0.583 6.583 16 C -0.174 4.174 17 C 0.108 3.892 18 N -0.526 5.526 19 C 0.226 3.774 20 C -0.106 4.106 21 C -0.063 4.063 22 C -0.123 4.123 23 C 0.040 3.960 24 N -0.329 5.329 25 C -0.107 4.107 26 C -0.103 4.103 27 C -0.109 4.109 28 C 0.148 3.852 29 H 0.015 0.985 30 H 0.255 0.745 31 H 0.015 0.985 32 H 0.006 0.994 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.404 0.596 36 H 0.200 0.800 37 H 0.177 0.823 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.167 0.833 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 -11.564 -17.840 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.271 4.271 3 Si 0.930 3.070 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.029 3.971 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.330 5.330 14 C 0.391 3.609 15 O -0.466 6.466 16 C -0.288 4.288 17 C -0.054 4.054 18 N -0.246 5.246 19 C -0.014 4.014 20 C -0.126 4.126 21 C -0.087 4.087 22 C -0.142 4.142 23 C -0.085 4.085 24 N 0.003 4.997 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.148 4.148 28 C 0.039 3.961 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.240 0.760 36 H 0.216 0.784 37 H 0.194 0.806 38 H 0.213 0.787 39 H 0.213 0.787 40 H 0.184 0.816 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.591 -9.895 -18.100 22.346 hybrid contribution -0.800 -1.442 1.034 1.947 sum 7.791 -11.337 -17.066 21.920 Atomic orbital electron populations 1.70864 1.08095 1.29402 1.50300 1.26777 0.96173 1.04013 1.00089 0.83031 0.75079 0.72761 0.76117 1.18967 1.22432 1.22328 1.19941 1.03647 0.90149 1.32789 0.90822 1.43833 1.31723 1.04463 1.51983 1.21948 0.89589 0.94521 0.91066 1.22486 0.96529 0.96097 1.00311 1.21448 0.89307 0.92954 0.90452 1.45316 1.42734 1.40057 1.04907 1.15440 0.80620 0.82725 0.82090 1.90717 1.44106 1.31798 1.79981 1.19827 1.14665 1.11499 0.82771 1.23455 0.92114 0.91265 0.98532 1.70482 1.28326 1.28170 0.97605 1.21831 0.92144 0.90443 0.96939 1.20830 1.03133 1.02977 0.85610 1.21759 0.92243 0.91775 1.02898 1.21559 1.00186 1.00698 0.91775 1.22395 0.97979 0.96342 0.91745 1.42526 1.27132 1.24285 1.05807 1.21901 0.99385 0.93219 1.00015 1.22762 0.98157 0.95038 0.98174 1.21837 0.95041 0.96685 1.01225 1.21005 0.96488 0.85813 0.92801 0.96757 0.93373 0.96693 0.97546 0.91800 0.89302 0.75953 0.78353 0.80564 0.78733 0.78721 0.81604 0.91410 0.89685 0.90520 0.89722 0.91639 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 12.99 21.65 0.28 -57.85 16 2 C -0.07 -4.19 5.15 84.86 0.44 -3.75 16 3 Si 1.10 51.26 30.03 68.60 2.06 53.32 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.34 -18.22 10.01 84.03 0.84 -17.38 16 8 H 0.07 3.89 8.01 -2.91 -0.02 3.87 16 9 N -0.60 -28.91 3.08 -668.44 -2.06 -30.97 16 10 C 0.15 7.41 5.62 86.99 0.49 7.89 16 11 C -0.12 -4.47 6.21 31.46 0.20 -4.27 16 12 C 0.15 5.12 0.38 4.37 0.00 5.12 16 13 N -0.68 -23.71 4.39 -428.08 -1.88 -25.59 16 14 C 0.60 21.21 6.95 85.12 0.59 21.80 16 15 O -0.58 -21.96 13.52 -4.60 -0.06 -22.02 16 16 C -0.17 -5.78 6.83 39.07 0.27 -5.51 16 17 C 0.11 3.44 11.32 84.69 0.96 4.40 16 18 N -0.53 -16.84 11.25 -192.74 -2.17 -19.01 16 19 C 0.23 6.23 7.77 134.00 1.04 7.27 16 20 C -0.11 -1.82 10.10 22.40 0.23 -1.59 16 21 C -0.06 -0.65 10.07 22.28 0.22 -0.42 16 22 C -0.12 -1.55 10.00 22.05 0.22 -1.33 16 23 C 0.04 0.90 10.51 83.37 0.88 1.77 16 24 N -0.33 -9.58 2.96 -344.21 -1.02 -10.60 16 25 C -0.11 -3.09 6.05 30.99 0.19 -2.90 16 26 C -0.10 -2.60 6.93 32.67 0.23 -2.38 16 27 C -0.11 -3.45 6.45 30.93 0.20 -3.25 16 28 C 0.15 5.77 2.64 46.47 0.12 5.89 16 29 H 0.02 0.61 7.96 -2.39 -0.02 0.59 16 30 H 0.26 16.00 5.98 -92.71 -0.55 15.44 16 31 H 0.02 0.80 6.25 -2.39 -0.01 0.79 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 2.54 7.35 -2.39 -0.02 2.52 16 34 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.40 14.16 6.53 -92.71 -0.61 13.56 16 36 H 0.20 5.59 7.38 -2.91 -0.02 5.57 16 37 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.20 0.17 8.06 -2.91 -0.02 0.15 16 39 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.17 3.99 6.81 -2.91 -0.02 3.97 16 41 H 0.07 2.08 6.69 -2.39 -0.02 2.07 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 2.07 7.28 -2.39 -0.02 2.05 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.09 365.79 2.89 -73.21 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.62 Total: 28.15 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.11 Total: 11.35 kcal Atomic # 7 Polarization: -137.17 SS G_CDS: -6.84 Total: -144.01 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.06 Total: 53.32 kcal Total: -76.09 2.89 -73.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991502676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.160 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds