Wall clock time and date at job start Sat Apr 11 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47025 * 269.99727 * 3 2 1 5 5 H 1.48503 * 109.47316 * 29.99601 * 3 2 1 6 6 H 1.48501 * 109.47187 * 149.99896 * 3 2 1 7 7 C 1.38808 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.49297 * 127.10685 * 0.03074 * 9 7 2 11 11 C 1.56234 * 106.51216 * 188.64193 * 10 9 7 12 12 C 1.52131 * 100.80519 * 23.44879 * 11 10 9 13 13 N 1.46493 * 111.08738 * 73.95182 * 12 11 10 14 14 C 1.34778 * 119.99931 * 71.69729 * 13 12 11 15 15 O 1.21774 * 120.00010 * 354.95051 * 14 13 12 16 16 C 1.41818 * 120.00121 * 174.94859 * 14 13 12 17 17 C 1.38533 * 126.78472 * 5.08373 * 16 14 13 18 18 N 1.32324 * 108.20997 * 179.86576 * 17 16 14 19 19 C 1.33193 * 109.81953 * 0.40551 * 18 17 16 20 20 C 1.40649 * 131.81811 * 179.73701 * 19 18 17 21 21 C 1.36284 * 119.38538 * 179.97438 * 20 19 18 22 22 C 1.40181 * 119.60921 * 359.97438 * 21 20 19 23 23 C 1.35260 * 120.12345 * 0.02836 * 22 21 20 24 24 N 1.35953 * 120.63722 * 359.96898 * 23 22 21 25 25 C 1.51374 * 122.13808 * 208.73822 * 12 11 10 26 26 C 1.55690 * 104.53555 * 141.25275 * 25 12 11 27 27 C 1.56278 * 105.99840 * 352.80478 * 26 25 12 28 28 C 1.42719 * 127.10457 * 180.02562 * 9 7 2 29 29 H 1.09001 * 108.17375 * 255.90080 * 28 9 7 30 30 H 0.97001 * 119.99967 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.04528 * 307.89990 * 10 9 7 32 32 H 1.08994 * 110.04625 * 69.37573 * 10 9 7 33 33 H 1.08996 * 111.15044 * 141.33451 * 11 10 9 34 34 H 1.08997 * 111.14903 * 265.56516 * 11 10 9 35 35 H 0.97003 * 120.00306 * 251.70007 * 13 12 11 36 36 H 1.08003 * 125.89119 * 359.97438 * 17 16 14 37 37 H 1.08004 * 120.31242 * 359.96188 * 20 19 18 38 38 H 1.08002 * 120.19980 * 180.02562 * 21 20 19 39 39 H 1.07993 * 119.93605 * 180.02562 * 22 21 20 40 40 H 1.07993 * 119.67880 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.42449 * 22.50118 * 25 12 11 42 42 H 1.09010 * 110.46748 * 260.02056 * 25 12 11 43 43 H 1.09003 * 110.15951 * 233.65724 * 26 25 12 44 44 H 1.08998 * 110.16280 * 111.96223 * 26 25 12 45 45 H 1.08998 * 110.97143 * 93.82455 * 27 26 25 46 46 H 1.08999 * 110.97636 * 217.59413 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1558 -2.5727 0.0017 11 6 -0.4132 -4.0970 0.2281 12 6 0.8806 -4.5056 0.9161 13 7 0.9156 -4.0267 2.3001 14 6 0.1240 -4.5962 3.2305 15 8 -0.6857 -5.4450 2.9040 16 6 0.2342 -4.2069 4.5898 17 6 1.0302 -3.1949 5.1010 18 7 0.8475 -3.1467 6.4106 19 6 -0.0231 -4.0846 6.7800 20 6 -0.5394 -4.4415 8.0387 21 6 -1.4368 -5.4633 8.1281 22 6 -1.8317 -6.1419 6.9669 23 6 -1.3238 -5.7838 5.7655 24 7 -0.4282 -4.7656 5.6675 25 6 1.4470 -5.9046 0.8008 26 6 2.9859 -5.6954 0.6914 27 6 3.2029 -4.1531 0.5639 28 6 1.8809 -3.7027 0.0028 29 1 1.7808 -4.1149 -1.0013 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6045 -1.9940 0.8091 32 1 -0.5711 -2.2620 -0.9570 33 1 -1.2726 -4.2583 0.8789 34 1 -0.5366 -4.6201 -0.7201 35 1 1.5085 -3.2997 2.5470 36 1 1.6853 -2.5545 4.5290 37 1 -0.2275 -3.9108 8.9262 38 1 -1.8419 -5.7480 9.0879 39 1 -2.5428 -6.9521 7.0316 40 1 -1.6333 -6.3112 4.8754 41 1 1.0656 -6.3968 -0.0939 42 1 1.2049 -6.4882 1.6891 43 1 3.3721 -6.2033 -0.1924 44 1 3.4808 -6.0717 1.5866 45 1 3.3859 -3.7029 1.5395 46 1 4.0165 -3.9292 -0.1261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991502681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:26 Heat of formation + Delta-G solvation = 100.539883 kcal Electronic energy + Delta-G solvation = -30552.164771 eV Core-core repulsion = 26637.330826 eV Total energy + Delta-G solvation = -3914.833946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.94828 -40.44438 -38.13607 -37.42700 -34.46079 -33.75179 -33.12073 -31.82057 -30.54257 -30.04278 -28.85585 -26.96890 -25.84015 -24.31620 -23.98362 -23.57847 -22.28026 -20.94687 -20.48134 -19.65982 -18.74647 -18.09843 -16.98489 -16.53830 -16.44259 -16.20031 -15.79500 -15.70163 -14.85226 -14.72060 -14.54922 -14.19573 -14.07169 -13.91436 -13.60494 -13.40368 -12.62738 -12.61877 -12.34927 -12.12724 -12.00965 -11.92260 -11.43425 -11.41412 -11.14269 -11.01987 -10.93856 -10.82849 -10.55057 -10.36017 -10.28884 -10.04641 -9.98104 -9.71179 -9.65265 -9.21395 -9.02507 -8.68671 -8.57257 -7.93798 -6.89332 -5.76650 -3.11926 0.57144 0.75414 2.28412 2.35386 3.36119 3.37731 3.43218 3.45307 3.63429 3.72188 4.03691 4.38681 4.43404 4.59514 4.64407 4.66833 4.89021 5.07524 5.19864 5.20864 5.30364 5.40182 5.45726 5.57696 5.63161 5.72205 5.77332 5.80403 5.90332 5.92775 5.96559 6.12625 6.22637 6.27798 6.30264 6.34521 6.40333 6.41032 6.48002 6.64363 6.80839 6.85500 6.87703 7.15152 7.49835 7.58684 7.63871 7.76005 7.98359 8.17198 8.58530 9.10787 9.77515 10.46030 11.35290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.003946 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.693400 B = 7094.960247 C = 8281.986634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.134 3.866 13 N -0.676 5.676 14 C 0.597 3.403 15 O -0.564 6.564 16 C -0.133 4.133 17 C 0.109 3.891 18 N -0.496 5.496 19 C 0.236 3.764 20 C -0.091 4.091 21 C -0.091 4.091 22 C -0.153 4.153 23 C 0.080 3.920 24 N -0.324 5.324 25 C -0.110 4.110 26 C -0.117 4.117 27 C -0.114 4.114 28 C 0.159 3.841 29 H 0.023 0.977 30 H 0.253 0.747 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.193 0.807 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -13.766 12.256 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.046 3.954 13 N -0.326 5.326 14 C 0.385 3.615 15 O -0.446 6.446 16 C -0.247 4.247 17 C -0.051 4.051 18 N -0.215 5.215 19 C -0.004 4.004 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.173 4.173 23 C -0.045 4.045 24 N 0.007 4.993 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.153 4.153 28 C 0.049 3.951 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.241 0.759 36 H 0.210 0.790 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.848 -13.552 12.443 18.418 hybrid contribution 0.225 0.826 -0.525 1.005 sum -0.623 -12.726 11.918 17.446 Atomic orbital electron populations 1.69919 1.04931 1.25204 1.56282 1.24791 0.95593 0.97649 1.01885 0.86179 0.78666 0.83666 0.77576 1.21652 1.21718 1.20593 1.19005 0.90285 0.82201 1.44674 0.90232 1.43679 1.01704 0.99211 1.86115 1.22020 0.83173 0.88616 1.00774 1.22803 0.96476 0.99472 0.99076 1.21576 0.98849 0.93990 0.80980 1.45352 1.42000 1.37166 1.08068 1.15336 0.81273 0.81924 0.82986 1.90748 1.36945 1.34529 1.82339 1.20055 1.08676 1.06341 0.89672 1.23299 0.96532 0.94766 0.90467 1.70511 1.17430 1.20249 1.13280 1.21128 0.97763 0.93001 0.88485 1.20313 0.98090 0.98735 0.93930 1.21125 0.96314 0.94755 0.99294 1.20919 1.02819 1.02759 0.90843 1.22086 0.91188 0.89910 1.01271 1.42422 1.26682 1.21814 1.08404 1.21887 0.94959 0.95992 1.02068 1.22820 0.95675 0.96003 1.01015 1.21836 0.97857 0.94447 1.01160 1.20840 0.91574 0.87421 0.95282 0.95952 0.93657 0.91688 0.94670 0.91210 0.91675 0.75900 0.79050 0.82886 0.83782 0.82897 0.80598 0.91014 0.91546 0.91911 0.92270 0.91588 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.55 55.49 0.59 -25.50 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.06 10.29 -15.06 -0.15 -6.22 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.58 -13.80 3.12 -162.69 -0.51 -14.31 16 10 C 0.18 4.22 5.33 -0.75 0.00 4.21 16 11 C -0.14 -2.75 6.18 -25.44 -0.16 -2.90 16 12 C 0.13 2.40 0.40 -130.65 -0.05 2.34 16 13 N -0.68 -11.90 4.37 -49.32 -0.22 -12.11 16 14 C 0.60 10.60 6.90 -14.89 -0.10 10.50 16 15 O -0.56 -10.86 13.54 5.12 0.07 -10.79 16 16 C -0.13 -2.20 6.83 -83.47 -0.57 -2.77 16 17 C 0.11 1.73 11.32 -17.23 -0.20 1.53 16 18 N -0.50 -7.97 11.25 -12.27 -0.14 -8.11 16 19 C 0.24 3.40 7.77 -156.07 -1.21 2.19 16 20 C -0.09 -0.93 10.10 -39.38 -0.40 -1.33 16 21 C -0.09 -0.71 10.07 -39.56 -0.40 -1.11 16 22 C -0.15 -1.31 10.00 -39.91 -0.40 -1.71 16 23 C 0.08 0.97 10.51 -16.79 -0.18 0.80 16 24 N -0.32 -4.82 2.96 -60.15 -0.18 -5.00 16 25 C -0.11 -1.70 6.07 -26.12 -0.16 -1.86 16 26 C -0.12 -1.61 6.93 -23.54 -0.16 -1.77 16 27 C -0.11 -1.84 6.47 -26.22 -0.17 -2.01 16 28 C 0.16 3.09 2.64 -68.73 -0.18 2.91 16 29 H 0.02 0.47 7.94 -51.93 -0.41 0.05 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.06 1.73 7.05 -51.92 -0.37 1.37 16 32 H 0.04 0.91 7.98 -51.93 -0.41 0.50 16 33 H 0.07 1.43 7.01 -51.93 -0.36 1.07 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.40 7.12 6.59 -40.82 -0.27 6.85 16 36 H 0.19 2.66 7.37 -52.48 -0.39 2.28 16 37 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.18 2.17 6.81 -52.49 -0.36 1.81 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.07 7.02 -51.92 -0.36 0.70 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.06 7.38 -51.93 -0.38 0.68 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -31.95 366.12 -10.73 -42.67 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.25 Total: 8.60 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -4.59 Total: 2.64 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.45 Total: -65.03 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.95 -10.73 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991502681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.211 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds