Wall clock time and date at job start Sat Apr 11 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47025 * 269.99727 * 3 2 1 5 5 H 1.48503 * 109.47316 * 29.99601 * 3 2 1 6 6 H 1.48501 * 109.47187 * 149.99896 * 3 2 1 7 7 C 1.38808 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.49297 * 127.10685 * 0.03074 * 9 7 2 11 11 C 1.56234 * 106.51216 * 188.64193 * 10 9 7 12 12 C 1.52131 * 100.80519 * 23.44879 * 11 10 9 13 13 N 1.46493 * 111.08738 * 73.95182 * 12 11 10 14 14 C 1.34778 * 119.99931 * 71.69729 * 13 12 11 15 15 O 1.21774 * 120.00010 * 354.95051 * 14 13 12 16 16 C 1.41818 * 120.00121 * 174.94859 * 14 13 12 17 17 C 1.38533 * 126.78472 * 5.08373 * 16 14 13 18 18 N 1.32324 * 108.20997 * 179.86576 * 17 16 14 19 19 C 1.33193 * 109.81953 * 0.40551 * 18 17 16 20 20 C 1.40649 * 131.81811 * 179.73701 * 19 18 17 21 21 C 1.36284 * 119.38538 * 179.97438 * 20 19 18 22 22 C 1.40181 * 119.60921 * 359.97438 * 21 20 19 23 23 C 1.35260 * 120.12345 * 0.02836 * 22 21 20 24 24 N 1.35953 * 120.63722 * 359.96898 * 23 22 21 25 25 C 1.51374 * 122.13808 * 208.73822 * 12 11 10 26 26 C 1.55690 * 104.53555 * 141.25275 * 25 12 11 27 27 C 1.56278 * 105.99840 * 352.80478 * 26 25 12 28 28 C 1.42719 * 127.10457 * 180.02562 * 9 7 2 29 29 H 1.09001 * 108.17375 * 255.90080 * 28 9 7 30 30 H 0.97001 * 119.99967 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.04528 * 307.89990 * 10 9 7 32 32 H 1.08994 * 110.04625 * 69.37573 * 10 9 7 33 33 H 1.08996 * 111.15044 * 141.33451 * 11 10 9 34 34 H 1.08997 * 111.14903 * 265.56516 * 11 10 9 35 35 H 0.97003 * 120.00306 * 251.70007 * 13 12 11 36 36 H 1.08003 * 125.89119 * 359.97438 * 17 16 14 37 37 H 1.08004 * 120.31242 * 359.96188 * 20 19 18 38 38 H 1.08002 * 120.19980 * 180.02562 * 21 20 19 39 39 H 1.07993 * 119.93605 * 180.02562 * 22 21 20 40 40 H 1.07993 * 119.67880 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.42449 * 22.50118 * 25 12 11 42 42 H 1.09010 * 110.46748 * 260.02056 * 25 12 11 43 43 H 1.09003 * 110.15951 * 233.65724 * 26 25 12 44 44 H 1.08998 * 110.16280 * 111.96223 * 26 25 12 45 45 H 1.08998 * 110.97143 * 93.82455 * 27 26 25 46 46 H 1.08999 * 110.97636 * 217.59413 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1558 -2.5727 0.0017 11 6 -0.4132 -4.0970 0.2281 12 6 0.8806 -4.5056 0.9161 13 7 0.9156 -4.0267 2.3001 14 6 0.1240 -4.5962 3.2305 15 8 -0.6857 -5.4450 2.9040 16 6 0.2342 -4.2069 4.5898 17 6 1.0302 -3.1949 5.1010 18 7 0.8475 -3.1467 6.4106 19 6 -0.0231 -4.0846 6.7800 20 6 -0.5394 -4.4415 8.0387 21 6 -1.4368 -5.4633 8.1281 22 6 -1.8317 -6.1419 6.9669 23 6 -1.3238 -5.7838 5.7655 24 7 -0.4282 -4.7656 5.6675 25 6 1.4470 -5.9046 0.8008 26 6 2.9859 -5.6954 0.6914 27 6 3.2029 -4.1531 0.5639 28 6 1.8809 -3.7027 0.0028 29 1 1.7808 -4.1149 -1.0013 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6045 -1.9940 0.8091 32 1 -0.5711 -2.2620 -0.9570 33 1 -1.2726 -4.2583 0.8789 34 1 -0.5366 -4.6201 -0.7201 35 1 1.5085 -3.2997 2.5470 36 1 1.6853 -2.5545 4.5290 37 1 -0.2275 -3.9108 8.9262 38 1 -1.8419 -5.7480 9.0879 39 1 -2.5428 -6.9521 7.0316 40 1 -1.6333 -6.3112 4.8754 41 1 1.0656 -6.3968 -0.0939 42 1 1.2049 -6.4882 1.6891 43 1 3.3721 -6.2033 -0.1924 44 1 3.4808 -6.0717 1.5866 45 1 3.3859 -3.7029 1.5395 46 1 4.0165 -3.9292 -0.1261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991502681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:24 Heat of formation + Delta-G solvation = 81.739733 kcal Electronic energy + Delta-G solvation = -30552.980007 eV Core-core repulsion = 26637.330826 eV Total energy + Delta-G solvation = -3915.649182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.98721 -41.91183 -39.51026 -38.39873 -36.16996 -34.74346 -34.45755 -33.63915 -31.91149 -31.25069 -30.03004 -28.55083 -27.31203 -25.97169 -25.21590 -24.62719 -23.31398 -22.35373 -21.91773 -21.24275 -20.15726 -19.30120 -18.35157 -17.92965 -17.55065 -17.31842 -17.28370 -16.63475 -16.38731 -16.09443 -15.85260 -15.68565 -15.44431 -15.35705 -14.89908 -14.71201 -14.16758 -14.06117 -13.53623 -13.32238 -13.06041 -13.01633 -12.96065 -12.90776 -12.84612 -12.64766 -12.17708 -12.12686 -12.04789 -12.02133 -11.80264 -11.57968 -11.51075 -11.35543 -11.08472 -10.76517 -10.67668 -10.08386 -9.93218 -8.97791 -8.86771 -7.82890 -5.18647 -0.34107 -0.18266 1.25041 1.28578 1.48909 1.49209 1.57824 2.31212 2.42044 2.48431 2.51687 3.06606 3.11731 3.37702 3.45000 3.68963 3.78398 3.88087 3.89241 3.96413 4.09976 4.13000 4.23695 4.31902 4.39837 4.42342 4.57171 4.58504 4.61496 4.78640 4.82654 4.94308 4.96977 5.03684 5.06921 5.10699 5.13918 5.21683 5.28427 5.31864 5.49258 5.50113 5.56261 5.60720 5.67289 5.78127 5.89871 6.18610 6.49863 6.62574 7.05176 7.20647 7.78058 8.50117 9.28811 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.003946 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.693400 B = 7094.960247 C = 8281.986634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.230 4.230 8 H 0.091 0.909 9 N -0.596 5.596 10 C 0.191 3.809 11 C -0.128 4.128 12 C 0.142 3.858 13 N -0.678 5.678 14 C 0.599 3.401 15 O -0.585 6.585 16 C -0.171 4.171 17 C 0.107 3.893 18 N -0.527 5.527 19 C 0.225 3.775 20 C -0.106 4.106 21 C -0.063 4.063 22 C -0.123 4.123 23 C 0.040 3.960 24 N -0.329 5.329 25 C -0.105 4.105 26 C -0.103 4.103 27 C -0.110 4.110 28 C 0.148 3.852 29 H 0.022 0.978 30 H 0.244 0.756 31 H 0.026 0.974 32 H 0.001 0.999 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.402 0.598 36 H 0.197 0.803 37 H 0.177 0.823 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.166 0.834 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 -16.208 14.628 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.359 4.359 8 H 0.108 0.892 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.328 5.328 14 C 0.389 3.611 15 O -0.469 6.469 16 C -0.285 4.285 17 C -0.054 4.054 18 N -0.247 5.247 19 C -0.014 4.014 20 C -0.126 4.126 21 C -0.087 4.087 22 C -0.142 4.142 23 C -0.084 4.084 24 N 0.003 4.997 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.149 4.149 28 C 0.039 3.961 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.020 0.980 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.214 0.786 37 H 0.194 0.806 38 H 0.213 0.787 39 H 0.213 0.787 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.113 -16.041 14.818 21.838 hybrid contribution -0.130 1.469 -1.104 1.842 sum -0.243 -14.572 13.713 20.012 Atomic orbital electron populations 1.70143 1.06426 1.25046 1.58378 1.25549 0.96279 1.00782 1.02818 0.85184 0.77931 0.79669 0.77194 1.21805 1.22882 1.18815 1.19400 0.90926 0.83056 1.42504 0.89167 1.43785 1.01769 1.00438 1.85960 1.21670 0.83474 0.90811 0.97420 1.22648 0.97344 0.96663 1.00018 1.21560 0.96775 0.95472 0.80812 1.45338 1.42195 1.37242 1.07982 1.15457 0.80672 0.81412 0.83526 1.90711 1.37803 1.35591 1.82804 1.19846 1.10937 1.08058 0.89626 1.23410 0.96500 0.94690 0.90809 1.70469 1.19129 1.21831 1.13221 1.21833 0.97380 0.92499 0.89734 1.20821 0.98804 1.00014 0.92922 1.21757 0.93684 0.92216 1.01007 1.21555 1.01031 1.02220 0.89423 1.22400 0.92599 0.90604 1.02834 1.42518 1.26950 1.22337 1.07930 1.21882 0.96179 0.93865 1.02440 1.22752 0.94239 0.94098 1.02976 1.21856 0.96003 0.96104 1.00913 1.21061 0.94193 0.85235 0.95645 0.96112 0.94702 0.95516 0.98039 0.92345 0.89974 0.76136 0.78613 0.80584 0.78713 0.78702 0.81641 0.89724 0.92064 0.89515 0.90691 0.91834 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.99 10.55 21.65 0.23 -56.76 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 3 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.23 -12.16 10.29 84.03 0.86 -11.30 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 9 N -0.60 -29.04 3.12 -668.64 -2.09 -31.13 16 10 C 0.19 9.59 5.33 86.96 0.46 10.05 16 11 C -0.13 -5.22 6.18 31.43 0.19 -5.02 16 12 C 0.14 5.10 0.40 4.36 0.00 5.10 16 13 N -0.68 -24.71 4.37 -428.13 -1.87 -26.58 16 14 C 0.60 22.23 6.90 85.13 0.59 22.82 16 15 O -0.59 -23.32 13.54 -4.58 -0.06 -23.39 16 16 C -0.17 -5.91 6.83 39.08 0.27 -5.64 16 17 C 0.11 3.57 11.32 84.69 0.96 4.53 16 18 N -0.53 -17.37 11.25 -192.73 -2.17 -19.54 16 19 C 0.23 6.38 7.77 134.00 1.04 7.42 16 20 C -0.11 -1.88 10.10 22.40 0.23 -1.65 16 21 C -0.06 -0.67 10.07 22.29 0.22 -0.45 16 22 C -0.12 -1.61 10.00 22.05 0.22 -1.39 16 23 C 0.04 0.93 10.51 83.37 0.88 1.81 16 24 N -0.33 -9.87 2.96 -344.21 -1.02 -10.89 16 25 C -0.10 -3.08 6.07 30.99 0.19 -2.89 16 26 C -0.10 -2.54 6.93 32.66 0.23 -2.32 16 27 C -0.11 -3.38 6.47 30.93 0.20 -3.18 16 28 C 0.15 5.71 2.64 46.46 0.12 5.83 16 29 H 0.02 0.85 7.94 -2.39 -0.02 0.83 16 30 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.03 1.53 7.05 -2.38 -0.02 1.51 16 32 H 0.00 0.08 7.98 -2.39 -0.02 0.06 16 33 H 0.06 2.51 7.01 -2.39 -0.02 2.50 16 34 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.40 14.84 6.59 -92.71 -0.61 14.23 16 36 H 0.20 5.91 7.37 -2.91 -0.02 5.88 16 37 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.20 0.92 8.06 -2.91 -0.02 0.89 16 40 H 0.17 4.13 6.81 -2.91 -0.02 4.11 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.90 7.02 -2.38 -0.02 1.88 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.98 7.38 -2.39 -0.02 1.96 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.88 366.12 2.58 -72.29 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.40 Total: 28.05 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.13 Total: 20.80 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -6.91 Total: -144.90 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.88 2.58 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991502681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.034 kcal (2) G-P(sol) polarization free energy of solvation -74.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds