Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99727 * 2 1 4 4 H 1.48489 * 109.47147 * 274.78271 * 3 2 1 5 5 H 1.48501 * 109.47131 * 34.78230 * 3 2 1 6 6 H 1.48503 * 109.46683 * 154.77935 * 3 2 1 7 7 C 1.38813 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00166 * 187.96183 * 7 2 1 9 9 N 1.36938 * 119.99655 * 7.96547 * 7 2 1 10 10 C 1.49287 * 127.10639 * 8.09889 * 9 7 2 11 11 C 1.56232 * 106.50837 * 171.37681 * 10 9 7 12 12 C 1.52132 * 100.81431 * 336.55102 * 11 10 9 13 13 N 1.46500 * 111.09634 * 286.03182 * 12 11 10 14 14 C 1.34778 * 119.99407 * 298.98350 * 13 12 11 15 15 O 1.21767 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.46298 * 120.00014 * 179.97438 * 14 13 12 17 17 N 1.32512 * 125.56566 * 359.97359 * 16 14 13 18 18 C 1.32022 * 109.87027 * 179.97438 * 17 16 14 19 19 C 1.39365 * 107.93324 * 0.02562 * 18 17 16 20 20 C 1.40411 * 133.41665 * 180.02562 * 19 18 17 21 21 C 1.36336 * 119.19067 * 179.97438 * 20 19 18 22 22 C 1.40323 * 119.58577 * 0.02562 * 21 20 19 23 23 C 1.35171 * 120.39839 * 0.02562 * 22 21 20 24 24 N 1.36182 * 120.59481 * 359.97161 * 23 22 21 25 25 C 1.51224 * 122.10219 * 151.84228 * 12 11 10 26 26 C 1.56580 * 104.18032 * 218.94978 * 25 12 11 27 27 C 1.56286 * 106.06839 * 6.57602 * 26 25 12 28 28 C 1.42703 * 127.09720 * 188.14411 * 9 7 2 29 29 H 1.08994 * 108.16206 * 103.44640 * 28 9 7 30 30 H 0.96997 * 120.00133 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.04962 * 52.11448 * 10 9 7 32 32 H 1.08997 * 110.04995 * 290.63768 * 10 9 7 33 33 H 1.09006 * 111.14724 * 218.66613 * 11 10 9 34 34 H 1.09003 * 111.15055 * 94.44309 * 11 10 9 35 35 H 0.96996 * 120.00599 * 118.98101 * 13 12 11 36 36 H 1.07998 * 126.03156 * 179.97438 * 18 17 16 37 37 H 1.08004 * 120.41008 * 0.02562 * 20 19 18 38 38 H 1.07994 * 120.20437 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.80354 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.70165 * 180.02562 * 23 22 21 41 41 H 1.08993 * 110.41373 * 336.86912 * 25 12 11 42 42 H 1.08999 * 110.40568 * 99.30335 * 25 12 11 43 43 H 1.09004 * 109.74025 * 247.60949 * 26 25 12 44 44 H 1.08996 * 110.51198 * 125.95912 * 26 25 12 45 45 H 1.08999 * 110.97471 * 266.56233 * 27 26 25 46 46 H 1.09000 * 110.96741 * 142.79735 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3965 2.1048 -1.3951 5 1 1.5017 2.6214 0.7987 6 1 3.5946 1.4131 0.5966 7 6 2.0103 -1.2021 0.0005 8 1 3.0825 -1.2066 0.1301 9 7 1.3355 -2.3824 -0.1633 10 6 -0.1041 -2.5549 -0.5191 11 6 -0.3130 -4.0778 -0.7980 12 6 1.1045 -4.4999 -1.1542 13 7 1.4755 -4.0272 -2.4903 14 6 0.7769 -4.4364 -3.5678 15 8 -0.1622 -5.1992 -3.4308 16 6 1.1469 -3.9640 -4.9020 17 7 2.1441 -3.1359 -5.1774 18 6 2.2001 -2.9178 -6.4783 19 6 1.1772 -3.6484 -7.0803 20 6 0.7570 -3.8045 -8.4109 21 6 -0.3072 -4.6126 -8.6816 22 6 -0.9621 -5.2714 -7.6298 23 6 -0.5440 -5.1083 -6.3548 24 7 0.5177 -4.3040 -6.0710 25 6 1.6085 -5.9055 -0.9153 26 6 3.0827 -5.7066 -0.4264 27 6 3.2769 -4.1654 -0.2540 28 6 1.8630 -3.7014 -0.0282 29 1 1.5299 -4.1043 0.9281 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3404 -1.9756 -1.4117 32 1 -0.7349 -2.2371 0.3111 33 1 -0.9923 -4.2346 -1.6361 34 1 -0.6655 -4.5963 0.0937 35 1 2.2238 -3.4198 -2.5995 36 1 2.9122 -2.2844 -6.9862 37 1 1.2709 -3.2914 -9.2103 38 1 -0.6446 -4.7441 -9.6990 39 1 -1.8052 -5.9127 -7.8403 40 1 -1.0560 -5.6211 -5.5540 41 1 1.0222 -6.3923 -0.1361 42 1 1.5712 -6.4846 -1.8380 43 1 3.7743 -6.0907 -1.1763 44 1 3.2412 -6.2139 0.5252 45 1 3.6937 -3.7212 -1.1579 46 1 3.9025 -3.9455 0.6112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991823441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = 98.447251 kcal Electronic energy + Delta-G solvation = -30512.647346 eV Core-core repulsion = 26597.722656 eV Total energy + Delta-G solvation = -3914.924689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.90146 -40.39223 -38.05792 -37.48821 -34.39864 -33.58201 -32.95979 -31.75429 -31.01274 -29.92921 -28.33932 -26.92095 -25.82824 -24.25689 -23.97295 -23.59759 -22.26622 -20.94275 -20.44604 -19.61228 -18.72375 -18.08187 -16.94067 -16.48532 -16.39383 -16.16420 -15.71628 -15.64024 -14.94527 -14.66251 -14.50264 -14.26693 -14.19204 -13.88113 -13.58748 -13.38387 -12.54474 -12.51530 -12.30553 -12.09662 -11.97582 -11.95411 -11.39302 -11.34170 -10.99689 -10.91982 -10.84314 -10.81651 -10.51553 -10.39781 -10.22401 -10.04525 -9.98270 -9.79650 -9.66024 -9.47605 -9.18782 -8.62110 -8.52971 -7.58673 -6.80193 -5.72024 -3.05533 0.61575 0.79804 2.28601 2.41837 3.23836 3.42633 3.48021 3.49530 3.59937 3.70565 4.31099 4.41378 4.49371 4.60947 4.64669 4.70610 4.74267 4.86354 5.21408 5.23513 5.33965 5.47656 5.50416 5.63197 5.64445 5.73080 5.78984 5.83884 5.93058 5.95951 5.99994 6.14282 6.25284 6.30664 6.35059 6.36398 6.41567 6.44975 6.52492 6.68008 6.85684 6.90702 6.91471 7.13137 7.52217 7.61592 7.64065 7.79381 8.04967 8.22915 8.56171 9.16304 9.84054 10.53083 11.41828 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.004067 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.835750 B = 6883.138808 C = 8105.572352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.581 5.581 10 C 0.180 3.820 11 C -0.141 4.141 12 C 0.130 3.870 13 N -0.660 5.660 14 C 0.608 3.392 15 O -0.557 6.557 16 C 0.097 3.903 17 N -0.399 5.399 18 C -0.013 4.013 19 C 0.014 3.986 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.141 4.141 23 C 0.069 3.931 24 N -0.322 5.322 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.117 4.117 28 C 0.161 3.839 29 H 0.024 0.976 30 H 0.252 0.748 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.187 0.813 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.179 0.821 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -12.487 -14.948 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.304 5.304 10 C 0.056 3.944 11 C -0.180 4.180 12 C 0.042 3.958 13 N -0.310 5.310 14 C 0.392 3.608 15 O -0.436 6.436 16 C -0.153 4.153 17 N -0.114 5.114 18 C -0.174 4.174 19 C -0.098 4.098 20 C -0.101 4.101 21 C -0.137 4.137 22 C -0.162 4.162 23 C -0.054 4.054 24 N 0.009 4.991 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.156 4.156 28 C 0.051 3.949 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.204 0.796 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.196 0.804 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.047 -12.480 -13.921 18.725 hybrid contribution 0.158 1.028 -0.824 1.327 sum 1.205 -11.452 -14.745 18.708 Atomic orbital electron populations 1.69938 1.05002 1.25152 1.56163 1.24789 0.95533 0.97709 1.01894 0.86167 0.78739 0.83771 0.77494 1.21636 1.21863 1.20551 1.18994 0.90837 0.82541 1.43536 0.90319 1.43613 1.06631 0.99207 1.80964 1.21925 0.84578 0.88541 0.99329 1.22832 0.94917 0.99317 1.00949 1.21673 0.97606 0.93938 0.82591 1.45339 1.33544 1.47454 1.04627 1.16066 0.82503 0.80750 0.81437 1.90761 1.29455 1.37491 1.85913 1.22626 0.97745 1.06956 0.87953 1.69990 1.14972 1.10176 1.16282 1.22724 1.00637 1.04902 0.89186 1.20008 0.98701 1.01582 0.89495 1.20537 0.97391 0.99220 0.92921 1.21137 0.95769 0.96953 0.99842 1.20942 1.01996 1.02340 0.90893 1.22106 0.89122 0.94689 0.99447 1.42437 1.20151 1.28552 1.07980 1.22049 0.96039 0.95839 1.01088 1.22966 0.96051 0.95999 1.00464 1.21871 0.97580 0.94418 1.01724 1.20800 0.92474 0.87467 0.94164 0.95870 0.93765 0.93936 0.93129 0.90592 0.91362 0.74989 0.79575 0.83312 0.84348 0.83163 0.80425 0.90934 0.91610 0.92245 0.91767 0.91536 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 10.80 55.49 0.60 -26.54 16 2 C 0.00 -0.06 5.45 -17.43 -0.10 -0.16 16 3 Si 0.91 22.26 29.56 -169.99 -5.03 17.24 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.31 10.26 -15.06 -0.15 -6.47 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.58 -14.49 3.16 -162.69 -0.51 -15.00 16 10 C 0.18 4.46 5.28 -0.76 0.00 4.45 16 11 C -0.14 -2.88 6.10 -25.44 -0.16 -3.04 16 12 C 0.13 2.42 0.42 -130.70 -0.06 2.37 16 13 N -0.66 -12.61 4.48 -47.97 -0.21 -12.83 16 14 C 0.61 11.54 7.16 -13.02 -0.09 11.45 16 15 O -0.56 -10.91 13.44 5.13 0.07 -10.84 16 16 C 0.10 1.72 7.82 -153.90 -1.20 0.52 16 17 N -0.40 -6.94 10.79 -10.62 -0.11 -7.05 16 18 C -0.01 -0.18 12.00 -17.05 -0.20 -0.38 16 19 C 0.01 0.18 6.80 -84.21 -0.57 -0.39 16 20 C -0.08 -0.75 10.11 -39.45 -0.40 -1.14 16 21 C -0.12 -0.92 10.08 -39.48 -0.40 -1.32 16 22 C -0.14 -1.27 9.98 -39.89 -0.40 -1.66 16 23 C 0.07 0.86 10.52 -16.71 -0.18 0.69 16 24 N -0.32 -4.87 2.95 -58.88 -0.17 -5.04 16 25 C -0.11 -1.75 6.24 -25.70 -0.16 -1.91 16 26 C -0.12 -1.66 6.95 -23.04 -0.16 -1.82 16 27 C -0.12 -2.00 6.46 -26.21 -0.17 -2.17 16 28 C 0.16 3.30 2.65 -68.72 -0.18 3.12 16 29 H 0.02 0.50 7.98 -51.93 -0.41 0.09 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 1.18 7.76 -51.93 -0.40 0.78 16 32 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 33 H 0.08 1.59 6.27 -51.93 -0.33 1.27 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.41 8.22 7.20 -40.82 -0.29 7.92 16 36 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.18 2.24 6.77 -52.48 -0.36 1.89 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.06 7.73 -51.93 -0.40 0.65 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.16 7.17 -51.93 -0.37 0.79 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -32.98 368.26 -10.71 -43.69 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.31 Total: 8.71 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -4.58 Total: 2.12 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.42 Total: -66.46 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.98 -10.71 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991823441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.136 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds