Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48498 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46974 * 300.00035 * 3 2 1 6 6 H 1.48500 * 109.46975 * 59.99716 * 3 2 1 7 7 C 1.38811 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.48704 * 126.78660 * 1.01768 * 9 7 2 11 11 C 1.56239 * 106.37798 * 188.54141 * 10 9 7 12 12 C 1.52133 * 100.80819 * 23.00449 * 11 10 9 13 13 N 1.46505 * 111.48817 * 74.10481 * 12 11 10 14 14 C 1.34771 * 120.00113 * 71.47438 * 13 12 11 15 15 O 1.21773 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.46295 * 120.00338 * 179.97438 * 14 13 12 17 17 N 1.32502 * 125.56214 * 0.03130 * 16 14 13 18 18 C 1.32021 * 109.87020 * 179.97438 * 17 16 14 19 19 C 1.39369 * 107.93168 * 359.97438 * 18 17 16 20 20 C 1.40414 * 133.41753 * 180.02562 * 19 18 17 21 21 C 1.36329 * 119.18903 * 179.97438 * 20 19 18 22 22 C 1.40328 * 119.58650 * 359.97438 * 21 20 19 23 23 C 1.35168 * 120.39797 * 0.02730 * 22 21 20 24 24 N 1.36177 * 120.59663 * 359.66147 * 23 22 21 25 25 C 1.51219 * 122.12176 * 208.79512 * 12 11 10 26 26 C 1.55689 * 104.60435 * 141.27990 * 25 12 11 27 27 C 1.56286 * 105.93748 * 352.74872 * 26 25 12 28 28 C 1.42709 * 127.10401 * 179.97438 * 9 7 2 29 29 H 1.09002 * 108.17861 * 256.54900 * 28 9 7 30 30 H 0.96990 * 120.00244 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.48876 * 69.11728 * 10 9 7 32 32 H 1.09007 * 109.78827 * 307.58570 * 10 9 7 33 33 H 1.08996 * 111.14898 * 265.11714 * 11 10 9 34 34 H 1.09007 * 111.18475 * 140.90526 * 11 10 9 35 35 H 0.97002 * 119.99703 * 251.47571 * 13 12 11 36 36 H 1.08005 * 126.03631 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.40569 * 359.94630 * 20 19 18 38 38 H 1.08001 * 120.20561 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.79626 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.69931 * 179.97438 * 23 22 21 41 41 H 1.09004 * 110.40906 * 22.49844 * 25 12 11 42 42 H 1.09004 * 110.51130 * 260.11194 * 25 12 11 43 43 H 1.09002 * 110.16155 * 233.62991 * 26 25 12 44 44 H 1.08999 * 110.21855 * 111.89417 * 26 25 12 45 45 H 1.08995 * 110.96850 * 217.62109 * 27 26 25 46 46 H 1.08995 * 110.97250 * 93.85647 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1509 -2.5640 -0.0189 11 6 -0.4165 -4.0858 0.2144 12 6 0.8708 -4.4963 0.9135 13 7 0.9061 -4.0172 2.2975 14 6 0.1068 -4.5791 3.2258 15 8 -0.6445 -5.4854 2.9142 16 6 0.1425 -4.1011 4.6080 17 7 0.9142 -3.1266 5.0667 18 6 0.6954 -2.9503 6.3566 19 6 -0.2768 -3.8656 6.7559 20 6 -0.8978 -4.1392 7.9852 21 6 -1.8372 -5.1251 8.0506 22 6 -2.1665 -5.8463 6.8928 23 6 -1.5581 -5.5689 5.7180 24 7 -0.6228 -4.5825 5.6378 25 6 1.4314 -5.8968 0.8086 26 6 2.9722 -5.6965 0.7096 27 6 3.1969 -4.1557 0.5755 28 6 1.8808 -3.7027 0.0018 29 1 1.7905 -4.1102 -1.0052 30 1 -0.4850 0.8399 -0.0004 31 1 -0.5584 -2.2568 -0.9820 32 1 -0.6034 -1.9786 0.7817 33 1 -0.5358 -4.6137 -0.7317 34 1 -1.2812 -4.2404 0.8599 35 1 1.5049 -3.2955 2.5457 36 1 1.1835 -2.2249 6.9906 37 1 -0.6342 -3.5759 8.8681 38 1 -2.3249 -5.3496 8.9877 39 1 -2.9099 -6.6283 6.9408 40 1 -1.8199 -6.1313 4.8340 41 1 1.0541 -6.3912 -0.0866 42 1 1.1797 -6.4764 1.6968 43 1 3.3623 -6.2108 -0.1687 44 1 3.4593 -6.0700 1.6103 45 1 4.0162 -3.9392 -0.1100 46 1 3.3751 -3.7011 1.5499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991823446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 98.799268 kcal Electronic energy + Delta-G solvation = -30520.273482 eV Core-core repulsion = 26605.364057 eV Total energy + Delta-G solvation = -3914.909425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.88509 -40.39578 -38.06052 -37.47534 -34.44660 -33.56749 -32.96220 -31.74386 -31.00014 -29.91914 -28.33268 -26.91825 -25.81954 -24.23520 -23.98590 -23.59722 -22.24774 -20.90357 -20.43896 -19.60394 -18.68939 -18.05801 -16.92600 -16.48509 -16.39420 -16.14861 -15.71287 -15.62395 -14.94358 -14.69480 -14.51955 -14.22042 -14.12670 -13.86996 -13.56237 -13.39653 -12.59876 -12.50555 -12.32663 -12.08166 -11.94848 -11.87354 -11.38777 -11.35138 -10.97397 -10.90733 -10.90217 -10.77979 -10.50882 -10.36396 -10.25000 -9.98594 -9.95182 -9.76702 -9.67077 -9.46044 -9.21237 -8.62685 -8.52737 -7.57157 -6.83645 -5.70474 -3.05742 0.62719 0.81164 2.30139 2.43837 3.25148 3.41899 3.47595 3.49868 3.62508 3.72482 4.32275 4.43400 4.48658 4.62543 4.65516 4.71667 4.75509 4.87754 5.24608 5.25220 5.36666 5.48856 5.51723 5.62987 5.65501 5.75078 5.79981 5.83759 5.95822 5.97435 6.01721 6.16540 6.26227 6.32462 6.36672 6.38803 6.43225 6.46703 6.52752 6.66530 6.84229 6.92220 6.93003 7.14539 7.53455 7.64884 7.64964 7.82279 8.08861 8.24268 8.58920 9.17559 9.83881 10.50939 11.41271 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.004015 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.934709 B = 6972.974284 C = 8234.472111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.583 5.583 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.131 3.869 13 N -0.659 5.659 14 C 0.607 3.393 15 O -0.559 6.559 16 C 0.097 3.903 17 N -0.397 5.397 18 C -0.012 4.012 19 C 0.013 3.987 20 C -0.080 4.080 21 C -0.116 4.116 22 C -0.141 4.141 23 C 0.069 3.931 24 N -0.323 5.323 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.116 4.116 28 C 0.161 3.839 29 H 0.025 0.975 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.415 0.585 36 H 0.187 0.813 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.178 0.822 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -12.878 14.056 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.306 5.306 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.043 3.957 13 N -0.308 5.308 14 C 0.392 3.608 15 O -0.439 6.439 16 C -0.153 4.153 17 N -0.112 5.112 18 C -0.174 4.174 19 C -0.098 4.098 20 C -0.100 4.100 21 C -0.138 4.138 22 C -0.162 4.162 23 C -0.054 4.054 24 N 0.008 4.992 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.050 3.950 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.253 0.747 36 H 0.204 0.796 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.195 0.805 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.529 -12.856 13.040 18.375 hybrid contribution -0.009 0.938 0.688 1.163 sum -1.538 -11.917 13.727 18.244 Atomic orbital electron populations 1.69928 1.04934 1.24974 1.56643 1.24784 0.95600 0.97658 1.01920 0.86083 0.78801 0.83939 0.77160 1.20460 1.21880 1.21764 1.19060 0.90348 0.82226 1.44220 0.90205 1.43550 1.01752 0.99314 1.86012 1.21936 0.83345 0.88568 1.00788 1.22809 0.96238 0.99739 0.99027 1.21612 0.99071 0.94092 0.80907 1.45356 1.40464 1.37410 1.07612 1.16070 0.81036 0.82215 0.81519 1.90768 1.41127 1.31037 1.80935 1.22632 0.99714 1.01253 0.91671 1.70009 1.19123 1.11217 1.10888 1.22737 1.00544 1.02257 0.91862 1.20013 1.02724 0.99066 0.88042 1.20535 0.96141 0.98365 0.94977 1.21132 0.97845 0.95885 0.98904 1.20936 1.01668 1.02189 0.91415 1.22096 0.90702 0.91249 1.01331 1.42444 1.24860 1.22581 1.09267 1.21885 0.94986 0.95953 1.02241 1.22822 0.95642 0.96027 1.01002 1.21857 0.97814 0.94469 1.01299 1.20853 0.91593 0.87371 0.95166 0.95791 0.93795 0.94751 0.91499 0.91461 0.91483 0.74665 0.79572 0.83321 0.84369 0.83194 0.80457 0.90981 0.91317 0.91891 0.92258 0.91649 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.49 55.49 0.58 -26.30 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.24 10.29 -15.06 -0.15 -6.39 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.58 -14.41 3.08 -163.13 -0.50 -14.92 16 10 C 0.18 4.36 5.33 -1.09 -0.01 4.35 16 11 C -0.14 -2.83 6.21 -25.44 -0.16 -2.98 16 12 C 0.13 2.47 0.40 -130.69 -0.05 2.42 16 13 N -0.66 -12.80 4.39 -47.96 -0.21 -13.01 16 14 C 0.61 11.59 7.10 -13.02 -0.09 11.50 16 15 O -0.56 -10.95 13.49 5.12 0.07 -10.88 16 16 C 0.10 1.74 7.82 -153.91 -1.20 0.54 16 17 N -0.40 -7.04 10.79 -10.62 -0.11 -7.16 16 18 C -0.01 -0.17 12.00 -17.05 -0.20 -0.38 16 19 C 0.01 0.17 6.80 -84.20 -0.57 -0.40 16 20 C -0.08 -0.75 10.11 -39.45 -0.40 -1.15 16 21 C -0.12 -0.93 10.08 -39.48 -0.40 -1.33 16 22 C -0.14 -1.27 9.98 -39.89 -0.40 -1.67 16 23 C 0.07 0.86 10.52 -16.72 -0.18 0.68 16 24 N -0.32 -4.89 2.95 -58.89 -0.17 -5.07 16 25 C -0.11 -1.80 6.03 -26.20 -0.16 -1.96 16 26 C -0.12 -1.70 6.94 -23.53 -0.16 -1.86 16 27 C -0.12 -2.00 6.46 -26.20 -0.17 -2.17 16 28 C 0.16 3.27 2.64 -68.69 -0.18 3.09 16 29 H 0.02 0.51 7.98 -51.93 -0.41 0.10 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.03 0.91 8.00 -51.93 -0.42 0.50 16 32 H 0.07 1.86 6.97 -51.92 -0.36 1.50 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.40 7.19 -51.92 -0.37 1.02 16 35 H 0.42 8.61 7.41 -40.82 -0.30 8.31 16 36 H 0.19 1.97 8.06 -52.48 -0.42 1.54 16 37 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.18 2.23 6.77 -52.49 -0.36 1.88 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.15 6.85 -51.93 -0.36 0.79 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.22 7.35 -51.93 -0.38 0.83 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -32.47 367.85 -10.72 -43.19 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.31 Total: 9.40 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -4.58 Total: 2.12 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.42 Total: -66.44 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.47 -10.72 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991823446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.987 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds