Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48498 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46974 * 300.00035 * 3 2 1 6 6 H 1.48500 * 109.46975 * 59.99716 * 3 2 1 7 7 C 1.38811 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.48704 * 126.78660 * 1.01768 * 9 7 2 11 11 C 1.56239 * 106.37798 * 188.54141 * 10 9 7 12 12 C 1.52133 * 100.80819 * 23.00449 * 11 10 9 13 13 N 1.46505 * 111.48817 * 74.10481 * 12 11 10 14 14 C 1.34771 * 120.00113 * 71.47438 * 13 12 11 15 15 O 1.21773 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.46295 * 120.00338 * 179.97438 * 14 13 12 17 17 N 1.32502 * 125.56214 * 0.03130 * 16 14 13 18 18 C 1.32021 * 109.87020 * 179.97438 * 17 16 14 19 19 C 1.39369 * 107.93168 * 359.97438 * 18 17 16 20 20 C 1.40414 * 133.41753 * 180.02562 * 19 18 17 21 21 C 1.36329 * 119.18903 * 179.97438 * 20 19 18 22 22 C 1.40328 * 119.58650 * 359.97438 * 21 20 19 23 23 C 1.35168 * 120.39797 * 0.02730 * 22 21 20 24 24 N 1.36177 * 120.59663 * 359.66147 * 23 22 21 25 25 C 1.51219 * 122.12176 * 208.79512 * 12 11 10 26 26 C 1.55689 * 104.60435 * 141.27990 * 25 12 11 27 27 C 1.56286 * 105.93748 * 352.74872 * 26 25 12 28 28 C 1.42709 * 127.10401 * 179.97438 * 9 7 2 29 29 H 1.09002 * 108.17861 * 256.54900 * 28 9 7 30 30 H 0.96990 * 120.00244 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.48876 * 69.11728 * 10 9 7 32 32 H 1.09007 * 109.78827 * 307.58570 * 10 9 7 33 33 H 1.08996 * 111.14898 * 265.11714 * 11 10 9 34 34 H 1.09007 * 111.18475 * 140.90526 * 11 10 9 35 35 H 0.97002 * 119.99703 * 251.47571 * 13 12 11 36 36 H 1.08005 * 126.03631 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.40569 * 359.94630 * 20 19 18 38 38 H 1.08001 * 120.20561 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.79626 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.69931 * 179.97438 * 23 22 21 41 41 H 1.09004 * 110.40906 * 22.49844 * 25 12 11 42 42 H 1.09004 * 110.51130 * 260.11194 * 25 12 11 43 43 H 1.09002 * 110.16155 * 233.62991 * 26 25 12 44 44 H 1.08999 * 110.21855 * 111.89417 * 26 25 12 45 45 H 1.08995 * 110.96850 * 217.62109 * 27 26 25 46 46 H 1.08995 * 110.97250 * 93.85647 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1509 -2.5640 -0.0189 11 6 -0.4165 -4.0858 0.2144 12 6 0.8708 -4.4963 0.9135 13 7 0.9061 -4.0172 2.2975 14 6 0.1068 -4.5791 3.2258 15 8 -0.6445 -5.4854 2.9142 16 6 0.1425 -4.1011 4.6080 17 7 0.9142 -3.1266 5.0667 18 6 0.6954 -2.9503 6.3566 19 6 -0.2768 -3.8656 6.7559 20 6 -0.8978 -4.1392 7.9852 21 6 -1.8372 -5.1251 8.0506 22 6 -2.1665 -5.8463 6.8928 23 6 -1.5581 -5.5689 5.7180 24 7 -0.6228 -4.5825 5.6378 25 6 1.4314 -5.8968 0.8086 26 6 2.9722 -5.6965 0.7096 27 6 3.1969 -4.1557 0.5755 28 6 1.8808 -3.7027 0.0018 29 1 1.7905 -4.1102 -1.0052 30 1 -0.4850 0.8399 -0.0004 31 1 -0.5584 -2.2568 -0.9820 32 1 -0.6034 -1.9786 0.7817 33 1 -0.5358 -4.6137 -0.7317 34 1 -1.2812 -4.2404 0.8599 35 1 1.5049 -3.2955 2.5457 36 1 1.1835 -2.2249 6.9906 37 1 -0.6342 -3.5759 8.8681 38 1 -2.3249 -5.3496 8.9877 39 1 -2.9099 -6.6283 6.9408 40 1 -1.8199 -6.1313 4.8340 41 1 1.0541 -6.3912 -0.0866 42 1 1.1797 -6.4764 1.6968 43 1 3.3623 -6.2108 -0.1687 44 1 3.4593 -6.0700 1.6103 45 1 4.0162 -3.9392 -0.1100 46 1 3.3751 -3.7011 1.5499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991823446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = 79.270783 kcal Electronic energy + Delta-G solvation = -30521.120300 eV Core-core repulsion = 26605.364057 eV Total energy + Delta-G solvation = -3915.756243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.92046 -41.93332 -39.47303 -38.47619 -36.22228 -34.65677 -34.24463 -33.62117 -32.10260 -31.54880 -29.42452 -28.57179 -27.35188 -25.99485 -25.14403 -24.70491 -23.25359 -22.36293 -21.92912 -21.26382 -20.16416 -19.28328 -18.38699 -17.86828 -17.49117 -17.36070 -17.26963 -16.47987 -16.41752 -16.10934 -15.91483 -15.70361 -15.50101 -15.43149 -14.94655 -14.65970 -14.21439 -14.10820 -13.55374 -13.22374 -13.12876 -13.06667 -12.97708 -12.87419 -12.71508 -12.66582 -12.21019 -12.13175 -12.02317 -11.82816 -11.78353 -11.60596 -11.50354 -11.39088 -11.25509 -10.83998 -10.71219 -10.43394 -10.02787 -8.88296 -8.56818 -7.83862 -5.20109 -0.21485 -0.17565 1.23853 1.28418 1.45927 1.47017 1.56924 2.31040 2.39109 2.46095 2.50380 3.05017 3.31162 3.37097 3.45054 3.69681 3.75816 3.78722 3.86170 3.95515 4.07650 4.16037 4.23709 4.33224 4.39576 4.41292 4.55189 4.59444 4.72044 4.76096 4.85062 4.90770 4.94338 5.02748 5.07662 5.08151 5.19209 5.20326 5.25517 5.42808 5.47640 5.53423 5.58158 5.59976 5.63943 5.74363 5.92496 6.18392 6.40675 6.71690 7.04821 7.13548 7.77150 8.47648 9.27597 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.004015 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.934709 B = 6972.974284 C = 8234.472111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.088 0.912 9 N -0.597 5.597 10 C 0.190 3.810 11 C -0.127 4.127 12 C 0.137 3.863 13 N -0.667 5.667 14 C 0.606 3.394 15 O -0.575 6.575 16 C 0.033 3.967 17 N -0.429 5.429 18 C -0.030 4.030 19 C 0.017 3.983 20 C -0.082 4.082 21 C -0.099 4.099 22 C -0.110 4.110 23 C 0.021 3.979 24 N -0.321 5.321 25 C -0.106 4.106 26 C -0.102 4.102 27 C -0.112 4.112 28 C 0.147 3.853 29 H 0.028 0.972 30 H 0.244 0.756 31 H 0.004 0.996 32 H 0.024 0.976 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.406 0.594 36 H 0.216 0.784 37 H 0.189 0.811 38 H 0.187 0.813 39 H 0.189 0.811 40 H 0.165 0.835 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -14.884 17.025 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.166 4.166 12 C 0.050 3.950 13 N -0.315 5.315 14 C 0.393 3.607 15 O -0.457 6.457 16 C -0.213 4.213 17 N -0.145 5.145 18 C -0.193 4.193 19 C -0.096 4.096 20 C -0.101 4.101 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.102 4.102 24 N 0.011 4.989 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.150 4.150 28 C 0.038 3.962 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.232 0.768 37 H 0.206 0.794 38 H 0.205 0.795 39 H 0.207 0.793 40 H 0.182 0.818 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.112 -14.920 15.968 21.882 hybrid contribution -0.293 1.478 0.032 1.507 sum -1.405 -13.442 16.000 20.944 Atomic orbital electron populations 1.70159 1.06438 1.24969 1.58496 1.25588 0.96377 1.00923 1.02709 0.85067 0.78480 0.79813 0.76353 1.18613 1.22203 1.22446 1.19439 0.90899 0.83246 1.42424 0.89439 1.43669 1.01906 1.00536 1.85904 1.21577 0.83521 0.90885 0.97432 1.22659 0.96959 0.96794 1.00161 1.21633 0.97167 0.95646 0.80553 1.45370 1.40817 1.37441 1.07887 1.16252 0.80393 0.81827 0.82246 1.90719 1.41659 1.31755 1.81553 1.22144 1.03225 1.04030 0.91860 1.69884 1.20035 1.11805 1.12795 1.23342 1.01419 1.03404 0.91163 1.20651 1.02083 0.97994 0.88897 1.21133 0.95670 0.98979 0.94324 1.21771 0.96264 0.93833 1.00146 1.21558 0.99858 1.01451 0.90100 1.22350 0.92501 0.92418 1.02901 1.42537 1.24516 1.22748 1.09083 1.21885 0.96086 0.93727 1.02777 1.22758 0.94342 0.93889 1.03011 1.21867 0.96256 0.96336 1.00548 1.21105 0.94084 0.85232 0.95755 0.95433 0.94688 0.97794 0.95766 0.89281 0.92511 0.75809 0.76764 0.79414 0.79528 0.79347 0.81794 0.89227 0.91928 0.89057 0.90957 0.90551 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 10.49 21.65 0.23 -58.76 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.23 -12.92 10.29 84.03 0.86 -12.06 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 9 N -0.60 -30.79 3.08 -670.01 -2.06 -32.85 16 10 C 0.19 10.01 5.33 87.08 0.46 10.47 16 11 C -0.13 -5.39 6.21 31.43 0.20 -5.19 16 12 C 0.14 5.33 0.40 4.33 0.00 5.33 16 13 N -0.67 -27.48 4.39 -423.84 -1.86 -29.34 16 14 C 0.61 24.73 7.10 86.34 0.61 25.35 16 15 O -0.58 -23.85 13.49 -4.58 -0.06 -23.92 16 16 C 0.03 1.26 7.82 135.57 1.06 2.32 16 17 N -0.43 -16.12 10.79 -187.52 -2.02 -18.14 16 18 C -0.03 -0.86 12.00 84.94 1.02 0.16 16 19 C 0.02 0.43 6.80 39.10 0.27 0.70 16 20 C -0.08 -1.18 10.11 22.35 0.23 -0.95 16 21 C -0.10 -1.04 10.08 22.33 0.23 -0.81 16 22 C -0.11 -1.55 9.98 22.07 0.22 -1.33 16 23 C 0.02 0.51 10.52 83.31 0.88 1.39 16 24 N -0.32 -9.88 2.95 -340.22 -1.00 -10.89 16 25 C -0.11 -3.32 6.03 30.94 0.19 -3.13 16 26 C -0.10 -2.76 6.94 32.67 0.23 -2.53 16 27 C -0.11 -3.77 6.46 30.94 0.20 -3.57 16 28 C 0.15 6.07 2.64 46.49 0.12 6.20 16 29 H 0.03 1.16 7.98 -2.39 -0.02 1.14 16 30 H 0.24 14.81 8.31 -92.72 -0.77 14.04 16 31 H 0.00 0.22 8.00 -2.39 -0.02 0.20 16 32 H 0.02 1.46 6.97 -2.38 -0.02 1.44 16 33 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.06 2.51 7.19 -2.38 -0.02 2.50 16 35 H 0.41 18.09 7.41 -92.71 -0.69 17.40 16 36 H 0.22 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.19 0.32 8.06 -2.91 -0.02 0.29 16 39 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.16 4.33 6.77 -2.91 -0.02 4.31 16 41 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.06 2.07 6.85 -2.39 -0.02 2.05 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.06 2.01 7.35 -2.39 -0.02 2.00 16 Total: -1.00 -78.31 367.85 2.80 -75.51 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.32 Total: 30.34 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.23 Total: 19.15 kcal Atomic # 7 Polarization: -143.26 SS G_CDS: -6.73 Total: -149.99 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -78.31 2.80 -75.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991823446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.780 kcal (2) G-P(sol) polarization free energy of solvation -78.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds