Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00578 * 2 1 4 4 H 1.48498 * 109.47267 * 89.99659 * 3 2 1 5 5 H 1.48502 * 109.47415 * 210.00277 * 3 2 1 6 6 H 1.48499 * 109.46803 * 330.00151 * 3 2 1 7 7 C 1.38816 * 119.99933 * 180.27390 * 2 1 3 8 8 H 1.08001 * 119.99537 * 25.02557 * 7 2 1 9 9 N 1.36928 * 120.00356 * 205.02608 * 7 2 1 10 10 C 1.47369 * 125.58141 * 8.54886 * 9 7 2 11 11 C 1.55089 * 104.71262 * 155.25737 * 10 9 7 12 12 C 1.54914 * 101.66863 * 37.35958 * 11 10 9 13 13 N 1.46500 * 112.33263 * 86.05156 * 12 11 10 14 14 C 1.34772 * 120.00017 * 64.35522 * 13 12 11 15 15 O 1.21649 * 120.00490 * 354.85486 * 14 13 12 16 16 C 1.47057 * 119.99769 * 174.85504 * 14 13 12 17 17 C 1.37599 * 119.93399 * 5.13719 * 16 14 13 18 18 C 1.39934 * 120.01766 * 179.97438 * 17 16 14 19 19 C 1.36214 * 119.91800 * 359.97438 * 18 17 16 20 20 C 1.40925 * 119.80010 * 0.02562 * 19 18 17 21 21 N 1.32574 * 132.18478 * 180.02562 * 20 19 18 22 22 C 1.33241 * 109.13133 * 179.34149 * 21 20 19 23 23 C 1.35445 * 108.58254 * 0.54470 * 22 21 20 24 24 N 1.36252 * 107.17462 * 359.52448 * 23 22 21 25 25 C 1.53584 * 109.57343 * 211.52499 * 12 11 10 26 26 C 1.54225 * 106.67437 * 113.29956 * 25 12 11 27 27 C 1.56746 * 104.50717 * 335.25043 * 26 25 12 28 28 C 1.46984 * 125.57951 * 188.85944 * 9 7 2 29 29 H 1.09002 * 111.81404 * 59.03010 * 28 9 7 30 30 H 0.96991 * 120.00128 * 174.97010 * 1 2 3 31 31 H 1.08999 * 110.36788 * 274.18663 * 10 9 7 32 32 H 1.09002 * 110.36543 * 36.50894 * 10 9 7 33 33 H 1.09001 * 111.15688 * 279.21305 * 11 10 9 34 34 H 1.08998 * 110.90311 * 155.39841 * 11 10 9 35 35 H 0.96998 * 119.99767 * 244.36117 * 13 12 11 36 36 H 1.07999 * 119.98965 * 359.95791 * 17 16 14 37 37 H 1.08000 * 120.04511 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.10072 * 180.02562 * 19 18 17 39 39 H 1.08007 * 125.71107 * 180.02562 * 22 21 20 40 40 H 1.08006 * 126.41753 * 179.48485 * 23 22 21 41 41 H 1.09002 * 110.02002 * 232.60492 * 25 12 11 42 42 H 1.09004 * 110.01695 * 353.95195 * 25 12 11 43 43 H 1.08996 * 110.49012 * 93.72878 * 26 25 12 44 44 H 1.09004 * 110.48982 * 216.25602 * 26 25 12 45 45 H 1.09002 * 111.10221 * 279.18802 * 27 26 25 46 46 H 1.09004 * 111.11374 * 155.43456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7001 6 1 1.4478 2.6526 -0.7000 7 6 2.0103 -1.2022 -0.0057 8 1 1.5462 -2.0916 -0.4057 9 7 3.2831 -1.2603 0.4956 10 6 3.9669 -0.1790 1.2271 11 6 5.0309 -0.9014 2.0939 12 6 5.4950 -2.0323 1.1423 13 7 6.5604 -1.5954 0.2365 14 6 7.7594 -1.2314 0.7325 15 8 7.9284 -1.1755 1.9359 16 6 8.8636 -0.9017 -0.1811 17 6 8.6430 -0.8623 -1.5387 18 6 9.6924 -0.5483 -2.4096 19 6 10.9318 -0.2813 -1.9116 20 6 11.1515 -0.3232 -0.5202 21 7 12.2325 -0.1106 0.2172 22 6 11.9198 -0.2600 1.5038 23 6 10.6088 -0.5881 1.5940 24 7 10.1155 -0.6271 0.3245 25 6 5.9007 -3.2635 1.9658 26 6 4.8756 -4.3695 1.6425 27 6 3.5938 -3.5942 1.1813 28 6 4.1935 -2.4092 0.3867 29 1 4.3886 -2.6743 -0.6524 30 1 -0.4850 -0.8367 -0.0736 31 1 4.4454 0.5077 0.5289 32 1 3.2601 0.3554 1.8619 33 1 4.5867 -1.3122 3.0006 34 1 5.8560 -0.2313 2.3351 35 1 6.4027 -1.5682 -0.7202 36 1 7.6598 -1.0741 -1.9322 37 1 9.5196 -0.5168 -3.4752 38 1 11.7436 -0.0382 -2.5810 39 1 12.6001 -0.1474 2.3351 40 1 10.0577 -0.7831 2.5022 41 1 6.9019 -3.5885 1.6828 42 1 5.8723 -3.0269 3.0295 43 1 5.2412 -5.0046 0.8357 44 1 4.6646 -4.9656 2.5305 45 1 3.0237 -3.2339 2.0377 46 1 2.9708 -4.2139 0.5363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991845090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 95.696509 kcal Electronic energy + Delta-G solvation = -30320.016297 eV Core-core repulsion = 26404.972327 eV Total energy + Delta-G solvation = -3915.043970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.05046 -40.60642 -38.64297 -37.32613 -34.64910 -33.88973 -33.75490 -32.04113 -30.82146 -29.89725 -28.98612 -27.25655 -26.46549 -24.91362 -23.40242 -22.91894 -22.56003 -21.54278 -20.79049 -19.80635 -19.23974 -17.95539 -17.60363 -17.51923 -16.88784 -16.30105 -16.08659 -15.79496 -15.31365 -14.90280 -14.79394 -14.27648 -14.18175 -13.88105 -13.75439 -13.54140 -13.21600 -12.90178 -12.68607 -12.60556 -12.25850 -11.96589 -11.93564 -11.75145 -11.33453 -11.30612 -10.98977 -10.91591 -10.79648 -10.43216 -10.41003 -10.27935 -10.14667 -9.89295 -9.65590 -9.36988 -9.12477 -8.98391 -8.56250 -8.10298 -7.17394 -6.39058 -3.25692 -0.01306 1.00687 2.10797 2.30954 2.89700 2.95778 3.29851 3.36911 3.43900 3.60101 3.95993 4.13523 4.26537 4.43212 4.52931 4.54082 4.74440 4.76636 5.00670 5.08356 5.11293 5.21276 5.30773 5.40333 5.44171 5.46778 5.54271 5.59378 5.65498 5.73503 5.77402 5.84594 5.89933 5.93979 6.10246 6.12772 6.15811 6.22288 6.34608 6.40721 6.46924 6.53810 6.62418 6.69651 6.74218 6.87154 7.29384 7.61389 7.61918 7.91414 8.26893 8.96876 9.51973 10.17336 11.10111 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003576 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.786211 B = 7828.148812 C = 8626.219815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.019 4.019 3 Si 1.064 2.936 4 H -0.295 1.295 5 H -0.288 1.288 6 H -0.300 1.300 7 C -0.327 4.327 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.100 3.900 11 C -0.128 4.128 12 C 0.161 3.839 13 N -0.691 5.691 14 C 0.562 3.438 15 O -0.522 6.522 16 C 0.037 3.963 17 C -0.087 4.087 18 C -0.118 4.118 19 C -0.048 4.048 20 C 0.200 3.800 21 N -0.485 5.485 22 C 0.021 3.979 23 C -0.063 4.063 24 N -0.335 5.335 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.124 4.124 28 C 0.163 3.837 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.402 0.598 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.678 -4.927 -1.905 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.896 3.104 4 H -0.223 1.223 5 H -0.215 1.215 6 H -0.228 1.228 7 C -0.454 4.454 8 H 0.096 0.904 9 N -0.327 5.327 10 C -0.024 4.024 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.342 5.342 14 C 0.347 3.653 15 O -0.399 6.399 16 C -0.069 4.069 17 C -0.109 4.109 18 C -0.142 4.142 19 C -0.068 4.068 20 C -0.041 4.041 21 N -0.205 5.205 22 C -0.131 4.131 23 C -0.197 4.197 24 N -0.007 5.007 25 C -0.149 4.149 26 C -0.163 4.163 27 C -0.164 4.164 28 C 0.055 3.945 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.173 0.827 39 H 0.200 0.800 40 H 0.211 0.789 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.221 -3.057 -1.268 20.490 hybrid contribution -0.646 -1.764 -0.272 1.898 sum 19.575 -4.820 -1.540 20.219 Atomic orbital electron populations 1.70900 1.05809 1.29987 1.49321 1.25759 0.96326 1.00737 0.99115 0.83881 0.74110 0.76239 0.76131 1.22326 1.21521 1.22795 1.19996 0.87452 0.96999 1.40966 0.90439 1.44858 1.12515 1.11064 1.64237 1.22149 0.93963 0.92388 0.93948 1.23124 0.98652 0.97304 0.97624 1.21743 0.85789 0.94598 0.90362 1.45757 1.11147 1.66305 1.11040 1.17420 0.82178 0.78163 0.87539 1.90798 1.82557 1.52092 1.14469 1.20206 0.85349 1.07635 0.93728 1.21405 1.01146 0.98345 0.89997 1.20971 0.91652 1.00511 1.01022 1.20458 0.98522 0.97859 0.89962 1.21017 0.83571 1.06672 0.92877 1.70647 1.24385 1.22388 1.03071 1.22618 0.93711 1.02460 0.94335 1.23165 0.96435 1.12824 0.87251 1.42554 1.07426 1.42200 1.08556 1.22240 0.98623 0.93906 1.00108 1.22701 0.95915 0.97121 1.00610 1.23202 0.95924 0.96630 1.00652 1.21802 0.87051 0.89661 0.96003 0.93161 0.92643 0.95167 0.91879 0.90121 0.90554 0.76100 0.82714 0.83108 0.82741 0.79973 0.78908 0.92124 0.90734 0.92137 0.91878 0.90496 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.88 13.70 55.49 0.76 -27.12 16 2 C -0.02 -0.53 5.43 -17.43 -0.09 -0.62 16 3 Si 1.06 25.95 24.69 -169.99 -4.20 21.75 16 4 H -0.30 -6.96 6.52 56.52 0.37 -6.59 16 5 H -0.29 -6.57 6.06 56.52 0.34 -6.23 16 6 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.33 -8.71 10.17 -15.06 -0.15 -8.87 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 N -0.60 -13.44 2.95 -160.99 -0.47 -13.92 16 10 C 0.10 2.11 4.68 -2.46 -0.01 2.10 16 11 C -0.13 -2.23 5.78 -24.62 -0.14 -2.37 16 12 C 0.16 2.48 0.73 -129.37 -0.09 2.38 16 13 N -0.69 -9.19 5.17 -46.52 -0.24 -9.43 16 14 C 0.56 7.75 6.90 -12.69 -0.09 7.66 16 15 O -0.52 -8.32 12.50 5.23 0.07 -8.25 16 16 C 0.04 0.45 6.78 -81.85 -0.56 -0.10 16 17 C -0.09 -0.79 9.53 -39.18 -0.37 -1.16 16 18 C -0.12 -0.89 10.04 -39.67 -0.40 -1.29 16 19 C -0.05 -0.44 10.09 -39.29 -0.40 -0.83 16 20 C 0.20 2.54 7.80 -156.03 -1.22 1.33 16 21 N -0.48 -6.60 11.31 -12.76 -0.14 -6.75 16 22 C 0.02 0.25 11.83 -17.94 -0.21 0.04 16 23 C -0.06 -0.81 10.80 -16.58 -0.18 -0.99 16 24 N -0.34 -4.43 2.97 -58.74 -0.17 -4.60 16 25 C -0.11 -1.53 5.33 -25.79 -0.14 -1.66 16 26 C -0.13 -1.64 6.88 -24.07 -0.17 -1.81 16 27 C -0.12 -2.05 6.38 -23.78 -0.15 -2.20 16 28 C 0.16 2.89 3.59 -65.60 -0.24 2.66 16 29 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16 30 H 0.26 7.88 8.73 -40.82 -0.36 7.53 16 31 H 0.03 0.65 5.75 -51.93 -0.30 0.35 16 32 H 0.06 1.44 5.72 -51.93 -0.30 1.15 16 33 H 0.08 1.38 7.65 -51.93 -0.40 0.98 16 34 H 0.08 1.32 6.65 -51.93 -0.35 0.98 16 35 H 0.40 4.51 6.49 -40.82 -0.26 4.24 16 36 H 0.16 1.03 6.33 -52.49 -0.33 0.70 16 37 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.19 2.40 6.67 -52.48 -0.35 2.05 16 41 H 0.06 0.83 7.50 -51.93 -0.39 0.44 16 42 H 0.07 1.06 7.41 -51.93 -0.38 0.67 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -33.37 357.33 -9.72 -43.10 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.10 Total: 5.58 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.61 Total: -5.75 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.27 Total: -61.82 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.25 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -4.20 Total: 21.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.37 -9.72 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991845090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.793 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds