Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00578 * 2 1 4 4 H 1.48498 * 109.47267 * 89.99659 * 3 2 1 5 5 H 1.48502 * 109.47415 * 210.00277 * 3 2 1 6 6 H 1.48499 * 109.46803 * 330.00151 * 3 2 1 7 7 C 1.38816 * 119.99933 * 180.27390 * 2 1 3 8 8 H 1.08001 * 119.99537 * 25.02557 * 7 2 1 9 9 N 1.36928 * 120.00356 * 205.02608 * 7 2 1 10 10 C 1.47369 * 125.58141 * 8.54886 * 9 7 2 11 11 C 1.55089 * 104.71262 * 155.25737 * 10 9 7 12 12 C 1.54914 * 101.66863 * 37.35958 * 11 10 9 13 13 N 1.46500 * 112.33263 * 86.05156 * 12 11 10 14 14 C 1.34772 * 120.00017 * 64.35522 * 13 12 11 15 15 O 1.21649 * 120.00490 * 354.85486 * 14 13 12 16 16 C 1.47057 * 119.99769 * 174.85504 * 14 13 12 17 17 C 1.37599 * 119.93399 * 5.13719 * 16 14 13 18 18 C 1.39934 * 120.01766 * 179.97438 * 17 16 14 19 19 C 1.36214 * 119.91800 * 359.97438 * 18 17 16 20 20 C 1.40925 * 119.80010 * 0.02562 * 19 18 17 21 21 N 1.32574 * 132.18478 * 180.02562 * 20 19 18 22 22 C 1.33241 * 109.13133 * 179.34149 * 21 20 19 23 23 C 1.35445 * 108.58254 * 0.54470 * 22 21 20 24 24 N 1.36252 * 107.17462 * 359.52448 * 23 22 21 25 25 C 1.53584 * 109.57343 * 211.52499 * 12 11 10 26 26 C 1.54225 * 106.67437 * 113.29956 * 25 12 11 27 27 C 1.56746 * 104.50717 * 335.25043 * 26 25 12 28 28 C 1.46984 * 125.57951 * 188.85944 * 9 7 2 29 29 H 1.09002 * 111.81404 * 59.03010 * 28 9 7 30 30 H 0.96991 * 120.00128 * 174.97010 * 1 2 3 31 31 H 1.08999 * 110.36788 * 274.18663 * 10 9 7 32 32 H 1.09002 * 110.36543 * 36.50894 * 10 9 7 33 33 H 1.09001 * 111.15688 * 279.21305 * 11 10 9 34 34 H 1.08998 * 110.90311 * 155.39841 * 11 10 9 35 35 H 0.96998 * 119.99767 * 244.36117 * 13 12 11 36 36 H 1.07999 * 119.98965 * 359.95791 * 17 16 14 37 37 H 1.08000 * 120.04511 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.10072 * 180.02562 * 19 18 17 39 39 H 1.08007 * 125.71107 * 180.02562 * 22 21 20 40 40 H 1.08006 * 126.41753 * 179.48485 * 23 22 21 41 41 H 1.09002 * 110.02002 * 232.60492 * 25 12 11 42 42 H 1.09004 * 110.01695 * 353.95195 * 25 12 11 43 43 H 1.08996 * 110.49012 * 93.72878 * 26 25 12 44 44 H 1.09004 * 110.48982 * 216.25602 * 26 25 12 45 45 H 1.09002 * 111.10221 * 279.18802 * 27 26 25 46 46 H 1.09004 * 111.11374 * 155.43456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7001 6 1 1.4478 2.6526 -0.7000 7 6 2.0103 -1.2022 -0.0057 8 1 1.5462 -2.0916 -0.4057 9 7 3.2831 -1.2603 0.4956 10 6 3.9669 -0.1790 1.2271 11 6 5.0309 -0.9014 2.0939 12 6 5.4950 -2.0323 1.1423 13 7 6.5604 -1.5954 0.2365 14 6 7.7594 -1.2314 0.7325 15 8 7.9284 -1.1755 1.9359 16 6 8.8636 -0.9017 -0.1811 17 6 8.6430 -0.8623 -1.5387 18 6 9.6924 -0.5483 -2.4096 19 6 10.9318 -0.2813 -1.9116 20 6 11.1515 -0.3232 -0.5202 21 7 12.2325 -0.1106 0.2172 22 6 11.9198 -0.2600 1.5038 23 6 10.6088 -0.5881 1.5940 24 7 10.1155 -0.6271 0.3245 25 6 5.9007 -3.2635 1.9658 26 6 4.8756 -4.3695 1.6425 27 6 3.5938 -3.5942 1.1813 28 6 4.1935 -2.4092 0.3867 29 1 4.3886 -2.6743 -0.6524 30 1 -0.4850 -0.8367 -0.0736 31 1 4.4454 0.5077 0.5289 32 1 3.2601 0.3554 1.8619 33 1 4.5867 -1.3122 3.0006 34 1 5.8560 -0.2313 2.3351 35 1 6.4027 -1.5682 -0.7202 36 1 7.6598 -1.0741 -1.9322 37 1 9.5196 -0.5168 -3.4752 38 1 11.7436 -0.0382 -2.5810 39 1 12.6001 -0.1474 2.3351 40 1 10.0577 -0.7831 2.5022 41 1 6.9019 -3.5885 1.6828 42 1 5.8723 -3.0269 3.0295 43 1 5.2412 -5.0046 0.8357 44 1 4.6646 -4.9656 2.5305 45 1 3.0237 -3.2339 2.0377 46 1 2.9708 -4.2139 0.5363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991845090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 74.245134 kcal Electronic energy + Delta-G solvation = -30320.946498 eV Core-core repulsion = 26404.972327 eV Total energy + Delta-G solvation = -3915.974172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.89328 -41.82125 -39.85839 -38.14834 -36.25450 -35.03357 -34.57905 -33.92449 -32.06380 -31.04418 -29.87719 -28.76654 -27.76579 -25.81446 -25.18987 -23.77315 -23.49670 -22.86450 -22.05900 -21.09924 -20.44945 -19.48967 -18.94968 -18.49597 -17.68428 -17.43359 -17.21194 -16.84571 -16.51146 -16.26647 -15.89043 -15.70707 -15.44062 -15.03766 -14.93760 -14.88815 -14.54707 -14.39729 -13.71443 -13.51664 -13.34278 -13.33013 -13.18468 -12.89465 -12.79905 -12.63944 -12.39666 -12.09394 -12.02867 -11.87507 -11.74277 -11.56960 -11.48961 -11.33247 -11.18097 -11.06851 -10.62550 -10.24018 -9.92714 -9.12797 -8.94063 -8.58940 -5.37901 -0.79895 0.24632 1.23120 1.39563 1.40007 1.48556 1.65439 1.97612 1.97851 2.48966 2.52828 2.99466 3.15670 3.21817 3.32129 3.38697 3.51283 3.67410 3.77629 3.81619 4.03769 4.16356 4.18583 4.30411 4.36915 4.40825 4.44061 4.46335 4.51392 4.62640 4.71160 4.73957 4.80121 4.86887 4.93860 4.96893 4.98525 5.05456 5.11166 5.18375 5.23764 5.38092 5.46130 5.48024 5.58483 5.65654 5.88077 6.13351 6.29179 6.75140 6.84810 6.90202 7.51454 8.14912 8.91391 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003576 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.786211 B = 7828.148812 C = 8626.219815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.077 4.077 3 Si 1.099 2.901 4 H -0.288 1.288 5 H -0.260 1.260 6 H -0.310 1.310 7 C -0.301 4.301 8 H 0.054 0.946 9 N -0.616 5.616 10 C 0.097 3.903 11 C -0.120 4.120 12 C 0.174 3.826 13 N -0.687 5.687 14 C 0.565 3.435 15 O -0.550 6.550 16 C 0.001 3.999 17 C -0.065 4.065 18 C -0.103 4.103 19 C -0.052 4.052 20 C 0.184 3.816 21 N -0.516 5.516 22 C 0.019 3.981 23 C -0.088 4.088 24 N -0.343 5.343 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.124 4.124 28 C 0.156 3.844 29 H 0.065 0.935 30 H 0.249 0.751 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.182 0.818 37 H 0.196 0.804 38 H 0.180 0.820 39 H 0.207 0.793 40 H 0.188 0.812 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.347 -5.561 -3.622 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.271 4.271 3 Si 0.928 3.072 4 H -0.215 1.215 5 H -0.186 1.186 6 H -0.239 1.239 7 C -0.429 4.429 8 H 0.072 0.928 9 N -0.342 5.342 10 C -0.027 4.027 11 C -0.159 4.159 12 C 0.087 3.913 13 N -0.339 5.339 14 C 0.352 3.648 15 O -0.429 6.429 16 C -0.105 4.105 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.072 4.072 20 C -0.058 4.058 21 N -0.236 5.236 22 C -0.133 4.133 23 C -0.221 4.221 24 N -0.015 5.015 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.164 4.164 28 C 0.050 3.950 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.200 0.800 37 H 0.213 0.787 38 H 0.198 0.802 39 H 0.224 0.776 40 H 0.205 0.795 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.940 -3.730 -2.996 23.434 hybrid contribution -1.456 -1.656 0.188 2.214 sum 21.484 -5.386 -2.808 22.326 Atomic orbital electron populations 1.71006 1.07096 1.29194 1.53244 1.26789 0.96309 1.03923 1.00049 0.83426 0.74126 0.72987 0.76710 1.21493 1.18562 1.23881 1.19873 0.89127 0.95657 1.38269 0.92841 1.44857 1.12141 1.13009 1.64188 1.22173 0.94196 0.92336 0.94016 1.23037 0.97544 0.97790 0.97516 1.21486 0.85474 0.94410 0.89905 1.45592 1.10538 1.66428 1.11326 1.17619 0.82391 0.77353 0.87461 1.90786 1.83007 1.53268 1.15791 1.20186 0.84722 1.11010 0.94589 1.21920 1.02771 0.95124 0.88810 1.21481 0.90183 0.98071 1.02854 1.20950 1.00221 0.97342 0.88703 1.21664 0.83323 1.06573 0.94225 1.70635 1.25298 1.23914 1.03790 1.23047 0.93901 1.01611 0.94702 1.23212 0.96929 1.14476 0.87506 1.42655 1.07897 1.42310 1.08624 1.22186 0.99183 0.93232 0.99621 1.22628 0.93394 0.96751 1.01968 1.23092 0.97320 0.96603 0.99422 1.22048 0.87427 0.88314 0.97227 0.91783 0.94111 0.94820 0.94201 0.90155 0.90237 0.74749 0.80050 0.78738 0.80223 0.77583 0.79460 0.91256 0.91057 0.90020 0.90323 0.93114 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 13.70 21.65 0.30 -59.93 16 2 C -0.08 -4.40 5.43 84.86 0.46 -3.94 16 3 Si 1.10 52.60 24.69 68.60 1.69 54.29 16 4 H -0.29 -13.26 6.52 99.48 0.65 -12.61 16 5 H -0.26 -11.11 6.06 99.48 0.60 -10.50 16 6 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 7 C -0.30 -16.20 10.17 84.04 0.85 -15.34 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 N -0.62 -27.12 2.95 -663.26 -1.95 -29.08 16 10 C 0.10 3.99 4.68 86.93 0.41 4.39 16 11 C -0.12 -4.02 5.78 31.96 0.18 -3.83 16 12 C 0.17 4.96 0.73 5.19 0.00 4.97 16 13 N -0.69 -16.27 5.17 -419.34 -2.17 -18.44 16 14 C 0.56 14.40 6.90 86.56 0.60 15.00 16 15 O -0.55 -16.92 12.50 -4.19 -0.05 -16.97 16 16 C 0.00 0.02 6.78 40.37 0.27 0.29 16 17 C -0.06 -0.89 9.53 22.53 0.21 -0.68 16 18 C -0.10 -1.04 10.04 22.21 0.22 -0.82 16 19 C -0.05 -0.77 10.09 22.46 0.23 -0.55 16 20 C 0.18 4.35 7.80 134.10 1.05 5.40 16 21 N -0.52 -13.59 11.31 -194.27 -2.20 -15.79 16 22 C 0.02 0.45 11.83 83.83 0.99 1.44 16 23 C -0.09 -2.24 10.80 83.36 0.90 -1.34 16 24 N -0.34 -8.63 2.97 -339.77 -1.01 -9.63 16 25 C -0.10 -2.60 5.33 31.21 0.17 -2.43 16 26 C -0.11 -2.55 6.88 32.32 0.22 -2.32 16 27 C -0.12 -3.95 6.38 32.51 0.21 -3.74 16 28 C 0.16 5.27 3.59 46.24 0.17 5.43 16 29 H 0.06 2.03 7.98 -2.39 -0.02 2.01 16 30 H 0.25 15.65 8.73 -92.71 -0.81 14.84 16 31 H 0.03 1.38 5.75 -2.39 -0.01 1.36 16 32 H 0.04 1.82 5.72 -2.39 -0.01 1.81 16 33 H 0.08 2.69 7.65 -2.39 -0.02 2.67 16 34 H 0.08 2.66 6.65 -2.39 -0.02 2.64 16 35 H 0.41 7.70 6.49 -92.71 -0.60 7.10 16 36 H 0.18 1.45 6.33 -2.91 -0.02 1.43 16 37 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 38 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.21 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.19 4.80 6.67 -2.91 -0.02 4.78 16 41 H 0.07 1.67 7.50 -2.39 -0.02 1.66 16 42 H 0.07 1.87 7.41 -2.38 -0.02 1.85 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 46 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.85 357.33 1.98 -73.87 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.22 Total: 19.75 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 7.15 Total: 1.93 kcal Atomic # 7 Polarization: -125.84 SS G_CDS: -7.03 Total: -132.87 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.05 Total: -16.97 kcal Atomic # 14 Polarization: 52.60 SS G_CDS: 1.69 Total: 54.29 kcal Total: -75.85 1.98 -73.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991845090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.119 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds