Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48493 * 109.47294 * 264.99892 * 3 2 1 5 5 H 1.48503 * 109.46984 * 24.99907 * 3 2 1 6 6 H 1.48503 * 109.46836 * 144.99630 * 3 2 1 7 7 C 1.38808 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00107 * 186.05033 * 7 2 1 9 9 N 1.36939 * 120.00014 * 6.05191 * 7 2 1 10 10 C 1.49294 * 127.10234 * 5.83656 * 9 7 2 11 11 C 1.56319 * 106.46172 * 171.24652 * 10 9 7 12 12 C 1.52132 * 100.90662 * 336.89413 * 11 10 9 13 13 N 1.46506 * 111.49966 * 285.68285 * 12 11 10 14 14 C 1.34774 * 120.00180 * 288.53586 * 13 12 11 15 15 O 1.21654 * 119.99770 * 355.22175 * 14 13 12 16 16 C 1.47046 * 119.99956 * 175.23123 * 14 13 12 17 17 C 1.37600 * 119.93528 * 5.70719 * 16 14 13 18 18 C 1.39937 * 120.01555 * 179.81495 * 17 16 14 19 19 C 1.36211 * 119.91885 * 0.44128 * 18 17 16 20 20 C 1.40919 * 119.80420 * 359.78908 * 19 18 17 21 21 N 1.32568 * 132.19276 * 179.97438 * 20 19 18 22 22 C 1.33243 * 109.14162 * 180.02562 * 21 20 19 23 23 C 1.35450 * 108.57415 * 359.97438 * 22 21 20 24 24 N 1.36252 * 107.18201 * 0.02562 * 23 22 21 25 25 C 1.51371 * 121.50073 * 150.70421 * 12 11 10 26 26 C 1.55691 * 104.23398 * 218.08599 * 25 12 11 27 27 C 1.56289 * 105.93021 * 7.82648 * 26 25 12 28 28 C 1.42703 * 127.10083 * 186.15936 * 9 7 2 29 29 H 1.08996 * 108.16524 * 103.45104 * 28 9 7 30 30 H 0.97000 * 120.00141 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.05241 * 290.62535 * 10 9 7 32 32 H 1.08995 * 110.04754 * 52.10993 * 10 9 7 33 33 H 1.08999 * 111.28113 * 218.90153 * 11 10 9 34 34 H 1.08998 * 110.97324 * 94.75903 * 11 10 9 35 35 H 0.96996 * 119.99592 * 108.52516 * 13 12 11 36 36 H 1.07997 * 119.99061 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.04107 * 180.23609 * 18 17 16 38 38 H 1.08000 * 120.10080 * 179.77086 * 19 18 17 39 39 H 1.07996 * 125.71226 * 179.97438 * 22 21 20 40 40 H 1.08004 * 126.40874 * 180.02562 * 23 22 21 41 41 H 1.09004 * 110.10026 * 99.66541 * 25 12 11 42 42 H 1.09006 * 111.17976 * 337.04240 * 25 12 11 43 43 H 1.08999 * 110.15811 * 248.71035 * 26 25 12 44 44 H 1.08994 * 110.22187 * 126.97538 * 26 25 12 45 45 H 1.09004 * 110.96737 * 266.13957 * 27 26 25 46 46 H 1.08999 * 110.96656 * 142.38407 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6034 1.9855 -1.3947 5 1 1.3987 2.6809 0.5917 6 1 3.4909 1.4730 0.8032 7 6 2.0103 -1.2021 -0.0005 8 1 3.0858 -1.2048 0.0980 9 7 1.3313 -2.3847 -0.1261 10 6 -0.1271 -2.5621 -0.3913 11 6 -0.3454 -4.0854 -0.6657 12 6 1.0504 -4.5017 -1.1049 13 7 1.3488 -4.0332 -2.4605 14 6 0.7391 -4.6017 -3.5195 15 8 0.0077 -5.5603 -3.3578 16 6 0.9580 -4.0633 -4.8703 17 6 1.8745 -3.0562 -5.0679 18 6 2.0870 -2.5453 -6.3532 19 6 1.3791 -3.0401 -7.4065 20 6 0.4383 -4.0681 -7.1971 21 7 -0.3691 -4.7180 -8.0236 22 6 -1.0749 -5.6119 -7.3321 23 6 -0.7113 -5.5345 -6.0296 24 7 0.2411 -4.5647 -5.9346 25 6 1.5671 -5.9053 -0.8722 26 6 3.0656 -5.7050 -0.5005 27 6 3.2668 -4.1628 -0.3462 28 6 1.8707 -3.7019 -0.0242 29 1 1.5957 -4.1073 0.9495 30 1 -0.4850 0.8400 0.0004 31 1 -0.7057 -2.2502 0.4782 32 1 -0.4215 -1.9806 -1.2649 33 1 -1.0719 -4.2437 -1.4627 34 1 -0.6434 -4.6069 0.2439 35 1 1.9852 -3.3137 -2.5959 36 1 2.4325 -2.6623 -4.2313 37 1 2.8090 -1.7575 -6.5093 38 1 1.5380 -2.6454 -8.3991 39 1 -1.8132 -6.2854 -7.7415 40 1 -1.1030 -6.1299 -5.2182 41 1 1.4773 -6.4937 -1.7854 42 1 1.0342 -6.3906 -0.0544 43 1 3.7045 -6.0895 -1.2954 44 1 3.2914 -6.2090 0.4392 45 1 3.6185 -3.7202 -1.2782 46 1 3.9504 -3.9386 0.4726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991845091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = 104.987458 kcal Electronic energy + Delta-G solvation = -30723.709748 eV Core-core repulsion = 26809.068664 eV Total energy + Delta-G solvation = -3914.641085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.83905 -40.68908 -38.51967 -37.08761 -34.57235 -33.58429 -33.42363 -31.94275 -30.54498 -29.75795 -28.74766 -27.06315 -26.01216 -24.76464 -24.14594 -22.70706 -22.32897 -21.00325 -20.58221 -19.73332 -19.02055 -17.81865 -17.45372 -16.65318 -16.59172 -16.07909 -15.86946 -15.54500 -14.95357 -14.77775 -14.45448 -14.22061 -14.02226 -13.96635 -13.64267 -13.54828 -12.81640 -12.49490 -12.42844 -12.38336 -12.05733 -11.81897 -11.55026 -11.50434 -11.12337 -11.10117 -11.00171 -10.93057 -10.64306 -10.41451 -10.22939 -10.17198 -10.12298 -9.89770 -9.80329 -9.36006 -8.92086 -8.77454 -8.76434 -7.88643 -6.99174 -5.88155 -3.22794 0.23502 1.22820 2.34642 2.56105 3.12561 3.29009 3.29710 3.35192 3.37768 3.54615 4.16547 4.33235 4.41987 4.48885 4.53203 4.69833 4.95245 5.10293 5.11755 5.32508 5.35570 5.42874 5.47407 5.50272 5.58414 5.68145 5.69587 5.77403 5.84623 5.87065 5.97019 6.02131 6.09275 6.16168 6.24655 6.29458 6.33336 6.36214 6.48770 6.59503 6.66107 6.75196 6.90188 6.96310 7.37226 7.45869 7.63309 7.66964 7.81039 8.05691 8.25761 8.99914 9.67058 10.35575 11.25370 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.004286 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.506103 B = 6531.436978 C = 7813.226254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.584 5.584 10 C 0.180 3.820 11 C -0.139 4.139 12 C 0.131 3.869 13 N -0.671 5.671 14 C 0.561 3.439 15 O -0.535 6.535 16 C 0.040 3.960 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.053 4.053 20 C 0.201 3.799 21 N -0.488 5.488 22 C 0.018 3.982 23 C -0.064 4.064 24 N -0.334 5.334 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.115 4.115 28 C 0.160 3.840 29 H 0.026 0.974 30 H 0.255 0.745 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -9.219 -8.609 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.178 4.178 12 C 0.044 3.956 13 N -0.322 5.322 14 C 0.346 3.654 15 O -0.414 6.414 16 C -0.067 4.067 17 C -0.108 4.108 18 C -0.138 4.138 19 C -0.074 4.074 20 C -0.041 4.041 21 N -0.208 5.208 22 C -0.134 4.134 23 C -0.198 4.198 24 N -0.006 5.006 25 C -0.152 4.152 26 C -0.156 4.156 27 C -0.154 4.154 28 C 0.050 3.950 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.199 0.801 40 H 0.210 0.790 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.866 -9.513 -9.214 13.796 hybrid contribution 0.630 1.198 0.857 1.602 sum 4.496 -8.314 -8.357 12.617 Atomic orbital electron populations 1.69921 1.05003 1.25466 1.55707 1.24809 0.95560 0.97750 1.01650 0.86204 0.78696 0.83529 0.77699 1.21469 1.21673 1.20660 1.18980 0.90611 0.82321 1.44721 0.90227 1.43666 1.04396 0.99219 1.83445 1.21966 0.83947 0.88348 1.00128 1.22817 0.94933 0.99649 1.00418 1.21623 0.97901 0.94483 0.81641 1.45505 1.43948 1.37785 1.04984 1.17408 0.81242 0.83591 0.83206 1.90760 1.38192 1.26802 1.85644 1.20284 0.98257 0.99664 0.88466 1.21440 0.96270 0.93744 0.99303 1.20982 1.00663 1.00898 0.91244 1.20414 0.92794 0.93102 1.01049 1.20996 1.02123 1.00901 0.80034 1.70621 1.09364 1.10061 1.30774 1.22575 1.01368 0.99629 0.89852 1.23127 0.97448 0.98214 1.00973 1.42545 1.25622 1.24878 1.07534 1.21923 0.95519 0.95820 1.01934 1.22836 0.96029 0.95885 1.00862 1.21858 0.97551 0.94524 1.01451 1.20836 0.92224 0.87423 0.94549 0.95636 0.93516 0.93353 0.93283 0.91636 0.91123 0.75734 0.82585 0.83201 0.82896 0.80131 0.79033 0.91058 0.90764 0.92232 0.91771 0.91798 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.27 10.70 55.49 0.59 -24.68 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 20.53 29.56 -169.99 -5.02 15.51 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.24 -5.92 10.28 -15.06 -0.15 -6.08 16 8 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 9 N -0.58 -13.14 3.13 -162.64 -0.51 -13.65 16 10 C 0.18 4.06 5.30 -0.71 0.00 4.06 16 11 C -0.14 -2.58 6.21 -25.39 -0.16 -2.74 16 12 C 0.13 2.19 0.38 -130.63 -0.05 2.14 16 13 N -0.67 -10.69 4.36 -47.69 -0.21 -10.89 16 14 C 0.56 9.13 7.10 -12.69 -0.09 9.04 16 15 O -0.54 -9.66 12.80 5.23 0.07 -9.59 16 16 C 0.04 0.59 6.78 -81.86 -0.56 0.04 16 17 C -0.09 -1.04 9.52 -39.18 -0.37 -1.42 16 18 C -0.11 -1.18 10.04 -39.67 -0.40 -1.58 16 19 C -0.05 -0.61 10.09 -39.30 -0.40 -1.01 16 20 C 0.20 2.99 7.80 -156.02 -1.22 1.77 16 21 N -0.49 -7.54 11.31 -12.76 -0.14 -7.69 16 22 C 0.02 0.24 11.83 -17.93 -0.21 0.03 16 23 C -0.06 -0.94 10.80 -16.58 -0.18 -1.12 16 24 N -0.33 -5.18 2.97 -58.75 -0.17 -5.35 16 25 C -0.11 -1.65 6.05 -26.12 -0.16 -1.80 16 26 C -0.12 -1.52 6.93 -23.53 -0.16 -1.68 16 27 C -0.12 -1.73 6.45 -26.21 -0.17 -1.90 16 28 C 0.16 2.93 2.64 -68.73 -0.18 2.75 16 29 H 0.03 0.51 7.96 -51.93 -0.41 0.09 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.05 1.22 7.64 -51.93 -0.40 0.82 16 32 H 0.05 1.23 7.58 -51.93 -0.39 0.84 16 33 H 0.06 1.25 7.35 -51.93 -0.38 0.87 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 6.24 5.74 -40.82 -0.23 6.00 16 36 H 0.16 1.67 6.34 -52.49 -0.33 1.33 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.19 2.76 6.68 -52.48 -0.35 2.41 16 41 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.93 7.28 -51.93 -0.38 0.55 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -30.81 364.11 -10.63 -41.43 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.16 Total: 9.01 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -4.55 Total: 0.41 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.44 Total: -62.26 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.81 -10.63 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991845091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.421 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds