Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47098 * 269.99927 * 3 2 1 5 5 H 1.48504 * 109.47328 * 29.99638 * 3 2 1 6 6 H 1.48505 * 109.47508 * 150.00140 * 3 2 1 7 7 C 1.38811 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99834 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.47368 * 125.57718 * 359.97209 * 9 7 2 11 11 C 1.54868 * 104.81898 * 204.73324 * 10 9 7 12 12 C 1.54921 * 101.76602 * 322.92505 * 11 10 9 13 13 N 1.46498 * 112.33031 * 273.23304 * 12 11 10 14 14 C 1.34782 * 120.00127 * 297.64275 * 13 12 11 15 15 O 1.21602 * 119.99685 * 359.97438 * 14 13 12 16 16 C 1.47519 * 119.99967 * 180.02562 * 14 13 12 17 17 C 1.46492 * 120.17107 * 0.02562 * 16 14 13 18 18 C 1.35536 * 119.05265 * 179.97438 * 17 16 14 19 19 C 1.41227 * 119.42089 * 359.97438 * 18 17 16 20 20 C 1.37910 * 132.96887 * 179.97438 * 19 18 17 21 21 N 1.33455 * 107.66140 * 179.97438 * 20 19 18 22 22 C 1.30750 * 109.93179 * 0.02562 * 21 20 19 23 23 N 1.35915 * 109.21367 * 359.97438 * 22 21 20 24 24 C 1.36328 * 120.16341 * 179.71842 * 16 14 13 25 25 C 1.53574 * 109.09705 * 148.11434 * 12 11 10 26 26 C 1.54220 * 106.67919 * 246.91408 * 25 12 11 27 27 C 1.54762 * 104.27132 * 24.87833 * 26 25 12 28 28 C 1.46975 * 125.57668 * 180.02562 * 9 7 2 29 29 H 1.08998 * 111.81513 * 300.89115 * 28 9 7 30 30 H 0.97006 * 119.99896 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.37268 * 85.89817 * 10 9 7 32 32 H 1.08996 * 110.37038 * 323.56760 * 10 9 7 33 33 H 1.08997 * 110.96887 * 204.81023 * 11 10 9 34 34 H 1.09000 * 110.97140 * 81.03951 * 11 10 9 35 35 H 0.97001 * 120.00380 * 117.64147 * 13 12 11 36 36 H 1.08008 * 120.47604 * 359.97438 * 17 16 14 37 37 H 1.07992 * 120.29093 * 179.97438 * 18 17 16 38 38 H 1.08006 * 126.17205 * 359.97438 * 20 19 18 39 39 H 1.08000 * 125.39054 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.74752 * 0.02562 * 24 16 14 41 41 H 1.09002 * 110.01783 * 127.60415 * 25 12 11 42 42 H 1.09005 * 110.05313 * 6.24182 * 25 12 11 43 43 H 1.09002 * 110.49687 * 143.61449 * 26 25 12 44 44 H 1.09006 * 110.49098 * 266.14556 * 26 25 12 45 45 H 1.08997 * 110.66900 * 80.68831 * 27 26 25 46 46 H 1.09005 * 110.66637 * 203.82665 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1411 -2.5313 0.0006 11 6 -0.4031 -3.9232 0.6270 12 6 0.7722 -4.7539 0.0537 13 7 0.4605 -5.3283 -1.2574 14 6 -0.5487 -6.2129 -1.3829 15 8 -1.2001 -6.5344 -0.4078 16 6 -0.8623 -6.7916 -2.7031 17 6 -0.0788 -6.4081 -3.8800 18 6 -0.3862 -6.9542 -5.0818 19 6 -1.4506 -7.8780 -5.1723 20 6 -1.9932 -8.5870 -6.2233 21 7 -2.9960 -9.3233 -5.7403 22 6 -3.1178 -9.1214 -4.4542 23 7 -2.1767 -8.2278 -4.0506 24 6 -1.8786 -7.6910 -2.8329 25 6 1.1760 -5.8257 1.0768 26 6 2.5898 -5.4566 1.5700 27 6 2.6878 -3.9295 1.3390 28 6 1.9334 -3.7263 0.0016 29 1 2.5746 -3.8806 -0.8662 30 1 -0.4850 0.8401 0.0004 31 1 -0.5259 -2.4954 -1.0186 32 1 -0.5986 -1.7500 0.6074 33 1 -1.3615 -4.3249 0.2980 34 1 -0.3538 -3.8770 1.7149 35 1 0.9803 -5.0721 -2.0352 36 1 0.7321 -5.7002 -3.7914 37 1 0.1780 -6.6854 -5.9626 38 1 -1.6656 -8.5527 -7.2520 39 1 -3.8499 -9.5912 -3.8140 40 1 -2.4541 -7.9781 -1.9652 41 1 1.1905 -6.8072 0.6029 42 1 0.4772 -5.8260 1.9134 43 1 2.6976 -5.6900 2.6292 44 1 3.3465 -5.9803 0.9858 45 1 2.1940 -3.3860 2.1445 46 1 3.7291 -3.6204 1.2467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991865595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 87.163086 kcal Electronic energy + Delta-G solvation = -29701.606346 eV Core-core repulsion = 25786.192339 eV Total energy + Delta-G solvation = -3915.414007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.96485 -40.38411 -38.52379 -36.89396 -34.38370 -33.95191 -33.31667 -31.63348 -31.10802 -29.70429 -28.38722 -26.78392 -26.32128 -24.39407 -23.88012 -23.20252 -22.08915 -21.39526 -20.05128 -19.84644 -18.98310 -18.27088 -17.29855 -17.07244 -16.68526 -16.12271 -15.77332 -15.35260 -15.03113 -14.88722 -14.72958 -14.44049 -14.05397 -13.77675 -13.57969 -13.29435 -13.17245 -12.89872 -12.26270 -12.12211 -11.93501 -11.82935 -11.73814 -11.22678 -11.04581 -11.04133 -10.87953 -10.73645 -10.60410 -10.58316 -10.25313 -10.15927 -10.02450 -9.88168 -9.71015 -9.55359 -9.51400 -8.71677 -8.66496 -7.84414 -6.91167 -5.69409 -3.12998 0.39675 0.75449 2.19802 2.52650 2.88794 3.24155 3.35793 3.41136 3.43178 3.43215 4.12474 4.31467 4.35300 4.42903 4.51974 4.60878 4.67561 4.83223 5.09121 5.16396 5.24893 5.26111 5.46834 5.49087 5.58523 5.62777 5.75820 5.79076 5.84761 5.92970 6.01050 6.08148 6.14765 6.17624 6.27507 6.29737 6.35769 6.47189 6.53631 6.70608 6.72277 6.81205 6.90807 7.03554 7.48391 7.55198 7.59285 7.62692 7.82643 8.26341 8.31767 9.16384 9.77391 10.40910 11.33047 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.002922 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.692053 B = 9578.709251 C =10505.327899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.141 4.141 12 C 0.159 3.841 13 N -0.692 5.692 14 C 0.569 3.431 15 O -0.535 6.535 16 C -0.148 4.148 17 C -0.100 4.100 18 C -0.078 4.078 19 C 0.006 3.994 20 C -0.021 4.021 21 N -0.454 5.454 22 C 0.151 3.849 23 N -0.377 5.377 24 C 0.124 3.876 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.128 4.128 28 C 0.163 3.837 29 H 0.046 0.954 30 H 0.252 0.748 31 H 0.009 0.991 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.182 0.818 39 H 0.215 0.785 40 H 0.181 0.819 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -16.235 -6.346 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.181 4.181 12 C 0.074 3.926 13 N -0.342 5.342 14 C 0.355 3.645 15 O -0.413 6.413 16 C -0.154 4.154 17 C -0.121 4.121 18 C -0.098 4.098 19 C -0.102 4.102 20 C -0.174 4.174 21 N -0.167 5.167 22 C -0.124 4.124 23 N -0.049 5.049 24 C 0.001 3.999 25 C -0.149 4.149 26 C -0.163 4.163 27 C -0.168 4.168 28 C 0.054 3.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.199 0.801 39 H 0.231 0.769 40 H 0.198 0.802 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.285 -16.789 -6.045 17.890 hybrid contribution 1.167 1.546 -0.035 1.937 sum -0.118 -15.243 -6.080 16.411 Atomic orbital electron populations 1.69799 1.04883 1.24771 1.57336 1.24783 0.95674 0.97698 1.02353 0.86101 0.78552 0.83460 0.77526 1.21698 1.21693 1.20698 1.19023 0.90438 0.82256 1.43258 0.90489 1.44526 1.01774 0.99156 1.86510 1.21983 0.84382 0.92990 0.97935 1.23344 0.96614 0.97989 1.00138 1.21709 0.97146 0.92418 0.81375 1.45748 1.33596 1.43253 1.11556 1.17560 0.80609 0.79422 0.86937 1.90796 1.50352 1.61248 1.38911 1.20559 0.98758 1.00867 0.95218 1.22147 0.99333 0.99660 0.90916 1.20422 0.95279 0.95267 0.98831 1.19787 0.98710 1.03863 0.87859 1.22581 0.96870 0.99210 0.98706 1.69964 1.17676 1.21824 1.07218 1.25214 0.97220 0.97224 0.92772 1.42990 1.24374 1.30239 1.07275 1.21707 0.97028 0.93935 0.87195 1.22273 0.96831 0.97534 0.98300 1.22368 0.96291 0.97361 1.00286 1.22949 1.00399 0.93929 0.99558 1.21803 0.91489 0.85830 0.95448 0.93640 0.93719 0.97316 0.87387 0.91468 0.91236 0.76497 0.83882 0.83047 0.80122 0.76892 0.80211 0.92336 0.91032 0.92182 0.92345 0.90631 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.07 55.49 0.56 -25.44 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.22 -5.78 10.01 -15.06 -0.15 -5.93 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -14.04 3.03 -161.07 -0.49 -14.53 16 10 C 0.15 3.57 5.91 -2.58 -0.02 3.56 16 11 C -0.14 -2.77 5.73 -24.73 -0.14 -2.91 16 12 C 0.16 2.69 0.76 -129.37 -0.10 2.59 16 13 N -0.69 -10.09 5.20 -46.38 -0.24 -10.33 16 14 C 0.57 8.20 6.94 -12.47 -0.09 8.12 16 15 O -0.53 -9.02 14.12 5.28 0.07 -8.94 16 16 C -0.15 -1.74 5.98 -103.48 -0.62 -2.36 16 17 C -0.10 -0.99 9.73 -37.22 -0.36 -1.35 16 18 C -0.08 -0.71 10.09 -39.41 -0.40 -1.11 16 19 C 0.01 0.06 6.78 -84.01 -0.57 -0.51 16 20 C -0.02 -0.22 12.00 -16.97 -0.20 -0.42 16 21 N -0.45 -5.33 11.19 -13.78 -0.15 -5.48 16 22 C 0.15 1.51 12.76 -89.37 -1.14 0.37 16 23 N -0.38 -4.06 2.94 -61.93 -0.18 -4.25 16 24 C 0.12 1.35 10.51 -16.22 -0.17 1.18 16 25 C -0.11 -1.68 5.25 -25.80 -0.14 -1.82 16 26 C -0.12 -1.76 6.83 -25.17 -0.17 -1.93 16 27 C -0.13 -2.20 6.23 -24.81 -0.15 -2.35 16 28 C 0.16 3.06 3.68 -65.54 -0.24 2.82 16 29 H 0.05 0.83 7.99 -51.93 -0.42 0.42 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.11 2.91 5.82 -51.93 -0.30 2.61 16 33 H 0.07 1.33 6.65 -51.93 -0.35 0.98 16 34 H 0.07 1.36 7.62 -51.93 -0.40 0.97 16 35 H 0.40 5.09 6.61 -40.82 -0.27 4.82 16 36 H 0.14 1.17 6.58 -52.48 -0.35 0.83 16 37 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.21 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.18 1.71 7.56 -52.48 -0.40 1.31 16 41 H 0.06 0.87 7.52 -51.93 -0.39 0.48 16 42 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -31.84 366.78 -10.85 -42.69 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.17 Total: 6.82 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.75 Total: -2.42 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.51 Total: -60.03 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.84 -10.85 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991865595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.857 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds