Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47098 * 269.99927 * 3 2 1 5 5 H 1.48504 * 109.47328 * 29.99638 * 3 2 1 6 6 H 1.48505 * 109.47508 * 150.00140 * 3 2 1 7 7 C 1.38811 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99834 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.47368 * 125.57718 * 359.97209 * 9 7 2 11 11 C 1.54868 * 104.81898 * 204.73324 * 10 9 7 12 12 C 1.54921 * 101.76602 * 322.92505 * 11 10 9 13 13 N 1.46498 * 112.33031 * 273.23304 * 12 11 10 14 14 C 1.34782 * 120.00127 * 297.64275 * 13 12 11 15 15 O 1.21602 * 119.99685 * 359.97438 * 14 13 12 16 16 C 1.47519 * 119.99967 * 180.02562 * 14 13 12 17 17 C 1.46492 * 120.17107 * 0.02562 * 16 14 13 18 18 C 1.35536 * 119.05265 * 179.97438 * 17 16 14 19 19 C 1.41227 * 119.42089 * 359.97438 * 18 17 16 20 20 C 1.37910 * 132.96887 * 179.97438 * 19 18 17 21 21 N 1.33455 * 107.66140 * 179.97438 * 20 19 18 22 22 C 1.30750 * 109.93179 * 0.02562 * 21 20 19 23 23 N 1.35915 * 109.21367 * 359.97438 * 22 21 20 24 24 C 1.36328 * 120.16341 * 179.71842 * 16 14 13 25 25 C 1.53574 * 109.09705 * 148.11434 * 12 11 10 26 26 C 1.54220 * 106.67919 * 246.91408 * 25 12 11 27 27 C 1.54762 * 104.27132 * 24.87833 * 26 25 12 28 28 C 1.46975 * 125.57668 * 180.02562 * 9 7 2 29 29 H 1.08998 * 111.81513 * 300.89115 * 28 9 7 30 30 H 0.97006 * 119.99896 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.37268 * 85.89817 * 10 9 7 32 32 H 1.08996 * 110.37038 * 323.56760 * 10 9 7 33 33 H 1.08997 * 110.96887 * 204.81023 * 11 10 9 34 34 H 1.09000 * 110.97140 * 81.03951 * 11 10 9 35 35 H 0.97001 * 120.00380 * 117.64147 * 13 12 11 36 36 H 1.08008 * 120.47604 * 359.97438 * 17 16 14 37 37 H 1.07992 * 120.29093 * 179.97438 * 18 17 16 38 38 H 1.08006 * 126.17205 * 359.97438 * 20 19 18 39 39 H 1.08000 * 125.39054 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.74752 * 0.02562 * 24 16 14 41 41 H 1.09002 * 110.01783 * 127.60415 * 25 12 11 42 42 H 1.09005 * 110.05313 * 6.24182 * 25 12 11 43 43 H 1.09002 * 110.49687 * 143.61449 * 26 25 12 44 44 H 1.09006 * 110.49098 * 266.14556 * 26 25 12 45 45 H 1.08997 * 110.66900 * 80.68831 * 27 26 25 46 46 H 1.09005 * 110.66637 * 203.82665 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1411 -2.5313 0.0006 11 6 -0.4031 -3.9232 0.6270 12 6 0.7722 -4.7539 0.0537 13 7 0.4605 -5.3283 -1.2574 14 6 -0.5487 -6.2129 -1.3829 15 8 -1.2001 -6.5344 -0.4078 16 6 -0.8623 -6.7916 -2.7031 17 6 -0.0788 -6.4081 -3.8800 18 6 -0.3862 -6.9542 -5.0818 19 6 -1.4506 -7.8780 -5.1723 20 6 -1.9932 -8.5870 -6.2233 21 7 -2.9960 -9.3233 -5.7403 22 6 -3.1178 -9.1214 -4.4542 23 7 -2.1767 -8.2278 -4.0506 24 6 -1.8786 -7.6910 -2.8329 25 6 1.1760 -5.8257 1.0768 26 6 2.5898 -5.4566 1.5700 27 6 2.6878 -3.9295 1.3390 28 6 1.9334 -3.7263 0.0016 29 1 2.5746 -3.8806 -0.8662 30 1 -0.4850 0.8401 0.0004 31 1 -0.5259 -2.4954 -1.0186 32 1 -0.5986 -1.7500 0.6074 33 1 -1.3615 -4.3249 0.2980 34 1 -0.3538 -3.8770 1.7149 35 1 0.9803 -5.0721 -2.0352 36 1 0.7321 -5.7002 -3.7914 37 1 0.1780 -6.6854 -5.9626 38 1 -1.6656 -8.5527 -7.2520 39 1 -3.8499 -9.5912 -3.8140 40 1 -2.4541 -7.9781 -1.9652 41 1 1.1905 -6.8072 0.6029 42 1 0.4772 -5.8260 1.9134 43 1 2.6976 -5.6900 2.6292 44 1 3.3465 -5.9803 0.9858 45 1 2.1940 -3.3860 2.1445 46 1 3.7291 -3.6204 1.2467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991865595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 70.048496 kcal Electronic energy + Delta-G solvation = -29702.348490 eV Core-core repulsion = 25786.192339 eV Total energy + Delta-G solvation = -3916.156152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.74485 -41.68299 -39.80292 -37.80249 -36.05697 -35.03070 -34.28025 -33.33469 -32.22702 -31.21590 -29.15302 -28.40708 -27.70745 -25.73851 -25.34590 -23.97710 -22.90572 -22.67141 -21.61545 -21.14608 -20.28856 -19.19561 -18.87733 -18.29650 -17.62769 -17.00798 -16.94053 -16.82147 -16.37415 -16.10433 -15.66575 -15.60768 -15.39974 -15.06348 -14.73377 -14.49653 -14.48278 -14.01742 -13.88861 -13.52885 -13.21032 -12.92678 -12.86582 -12.81614 -12.66742 -12.63051 -12.30231 -12.02345 -11.89295 -11.78968 -11.69925 -11.60653 -11.47601 -11.39902 -11.23967 -10.95741 -10.71136 -10.40890 -9.97899 -8.85246 -8.60458 -7.72596 -5.17209 -0.45213 -0.00032 1.37833 1.49168 1.49888 1.58486 1.60652 2.07319 2.15289 2.50004 2.52631 3.32122 3.36970 3.38858 3.54731 3.63966 3.65491 3.75574 3.83851 3.90762 3.95948 3.97551 4.37301 4.38041 4.45363 4.49592 4.51449 4.60085 4.65893 4.76755 4.81413 4.87162 4.91063 4.96914 5.10534 5.12626 5.17890 5.23974 5.33828 5.42718 5.48883 5.53250 5.54781 5.66287 5.66702 5.85050 6.04479 6.32563 6.48732 6.77853 7.12799 7.13475 7.82000 8.45453 9.28572 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.002922 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.692053 B = 9578.709251 C =10505.327899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.975 3.025 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.222 4.222 8 H 0.086 0.914 9 N -0.611 5.611 10 C 0.162 3.838 11 C -0.129 4.129 12 C 0.171 3.829 13 N -0.691 5.691 14 C 0.571 3.429 15 O -0.563 6.563 16 C -0.160 4.160 17 C -0.111 4.111 18 C -0.070 4.070 19 C -0.014 4.014 20 C -0.026 4.026 21 N -0.483 5.483 22 C 0.153 3.847 23 N -0.384 5.384 24 C 0.129 3.871 25 C -0.104 4.104 26 C -0.110 4.110 27 C -0.124 4.124 28 C 0.154 3.846 29 H 0.060 0.940 30 H 0.243 0.757 31 H -0.017 1.017 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.409 0.591 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.204 0.796 39 H 0.245 0.755 40 H 0.190 0.810 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -17.993 -7.107 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.351 4.351 8 H 0.104 0.896 9 N -0.335 5.335 10 C 0.036 3.964 11 C -0.169 4.169 12 C 0.084 3.916 13 N -0.341 5.341 14 C 0.359 3.641 15 O -0.443 6.443 16 C -0.167 4.167 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.121 4.121 20 C -0.178 4.178 21 N -0.196 5.196 22 C -0.122 4.122 23 N -0.056 5.056 24 C 0.006 3.994 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.164 4.164 28 C 0.048 3.952 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.000 1.000 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.176 0.824 37 H 0.199 0.801 38 H 0.221 0.779 39 H 0.261 0.739 40 H 0.207 0.793 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.465 -18.583 -6.832 19.804 hybrid contribution 0.572 2.018 0.145 2.103 sum 1.037 -16.565 -6.687 17.894 Atomic orbital electron populations 1.70062 1.06270 1.24660 1.59159 1.25565 0.96428 1.00837 1.03304 0.85120 0.77687 0.79524 0.77259 1.21613 1.22722 1.19249 1.19396 0.91012 0.83265 1.41399 0.89619 1.44708 1.01857 1.00545 1.86409 1.21628 0.84676 0.94166 0.95896 1.23139 0.97806 0.96200 0.99718 1.21493 0.94774 0.92472 0.82882 1.45653 1.34100 1.43244 1.11073 1.17862 0.79805 0.78801 0.87639 1.90778 1.51150 1.62205 1.40161 1.20382 1.00023 1.01779 0.94515 1.22283 0.99850 1.00469 0.90518 1.20767 0.94583 0.94012 0.99577 1.20166 0.99435 1.04578 0.87964 1.23057 0.96362 0.98568 0.99784 1.69995 1.18618 1.22859 1.08148 1.25921 0.97063 0.96414 0.92823 1.43111 1.24732 1.30524 1.07260 1.21812 0.96634 0.93372 0.87584 1.22210 0.97499 0.97181 0.97441 1.22308 0.95908 0.94728 1.01882 1.22813 1.00063 0.96220 0.97341 1.22076 0.92399 0.83872 0.96882 0.92236 0.94685 0.99954 0.91170 0.91905 0.91545 0.75356 0.82415 0.80051 0.77915 0.73905 0.79339 0.91327 0.91768 0.90420 0.89955 0.93246 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.92 10.07 21.65 0.22 -55.70 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.97 44.49 29.55 68.60 2.03 46.51 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.22 -11.63 10.01 84.03 0.84 -10.78 16 8 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.61 -29.14 3.03 -663.49 -2.01 -31.15 16 10 C 0.16 7.92 5.91 86.85 0.51 8.44 16 11 C -0.13 -5.15 5.73 31.89 0.18 -4.97 16 12 C 0.17 5.59 0.76 5.19 0.00 5.59 16 13 N -0.69 -19.34 5.20 -418.90 -2.18 -21.52 16 14 C 0.57 15.96 6.94 86.69 0.60 16.56 16 15 O -0.56 -18.64 14.12 -4.04 -0.06 -18.70 16 16 C -0.16 -3.60 5.98 -19.12 -0.11 -3.71 16 17 C -0.11 -1.99 9.73 23.80 0.23 -1.76 16 18 C -0.07 -1.12 10.09 22.38 0.23 -0.89 16 19 C -0.01 -0.28 6.78 38.81 0.26 -0.01 16 20 C -0.03 -0.50 12.00 84.37 1.01 0.51 16 21 N -0.48 -10.62 11.19 -197.51 -2.21 -12.83 16 22 C 0.15 2.81 12.76 179.91 2.30 5.10 16 23 N -0.38 -7.70 2.94 -349.85 -1.03 -8.73 16 24 C 0.13 2.65 10.51 83.54 0.88 3.53 16 25 C -0.10 -2.96 5.25 31.20 0.16 -2.80 16 26 C -0.11 -2.75 6.83 31.61 0.22 -2.53 16 27 C -0.12 -4.05 6.23 31.84 0.20 -3.85 16 28 C 0.15 5.63 3.68 46.28 0.17 5.80 16 29 H 0.06 2.04 7.99 -2.39 -0.02 2.02 16 30 H 0.24 14.08 8.31 -92.70 -0.77 13.31 16 31 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.07 4.01 5.82 -2.39 -0.01 3.99 16 33 H 0.06 2.55 6.65 -2.39 -0.02 2.53 16 34 H 0.07 2.66 7.62 -2.39 -0.02 2.64 16 35 H 0.41 9.80 6.61 -92.71 -0.61 9.19 16 36 H 0.16 2.25 6.58 -2.91 -0.02 2.23 16 37 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.25 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.19 3.40 7.56 -2.91 -0.02 3.38 16 41 H 0.07 1.84 7.52 -2.39 -0.02 1.82 16 42 H 0.06 1.93 7.37 -2.38 -0.02 1.91 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 46 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -70.61 366.78 3.31 -67.30 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.40 Total: 23.93 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 8.15 Total: 10.89 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -7.21 Total: -129.93 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.06 Total: -18.70 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.61 3.31 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991865595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.349 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds