Wall clock time and date at job start Sat Apr 11 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47385 * 273.08627 * 3 2 1 5 5 H 1.48501 * 109.47379 * 33.08358 * 3 2 1 6 6 H 1.48501 * 109.47501 * 153.08729 * 3 2 1 7 7 C 1.38817 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99526 * 189.03585 * 7 2 1 9 9 N 1.36928 * 120.00035 * 9.04299 * 7 2 1 10 10 C 1.47476 * 125.57101 * 10.98405 * 9 7 2 11 11 C 1.54859 * 104.77560 * 155.29377 * 10 9 7 12 12 C 1.54922 * 101.79772 * 37.07387 * 11 10 9 13 13 N 1.46501 * 112.33488 * 86.74808 * 12 11 10 14 14 C 1.34774 * 119.99661 * 61.01564 * 13 12 11 15 15 O 1.21601 * 120.00823 * 359.97438 * 14 13 12 16 16 C 1.47521 * 119.99826 * 180.02562 * 14 13 12 17 17 C 1.46505 * 120.16412 * 359.71902 * 16 14 13 18 18 C 1.35536 * 119.04649 * 179.70948 * 17 16 14 19 19 C 1.41234 * 119.42610 * 0.56729 * 18 17 16 20 20 C 1.37906 * 132.97340 * 179.70201 * 19 18 17 21 21 N 1.33449 * 107.66095 * 180.02562 * 20 19 18 22 22 C 1.30749 * 109.93589 * 359.97438 * 21 20 19 23 23 N 1.35916 * 109.20695 * 359.97438 * 22 21 20 24 24 C 1.36325 * 120.16947 * 180.02562 * 16 14 13 25 25 C 1.53590 * 109.08779 * 211.86350 * 12 11 10 26 26 C 1.54217 * 106.67288 * 113.07357 * 25 12 11 27 27 C 1.54753 * 104.16039 * 335.05990 * 26 25 12 28 28 C 1.46984 * 125.58153 * 190.95896 * 9 7 2 29 29 H 1.09000 * 112.53706 * 58.62324 * 28 9 7 30 30 H 0.97001 * 120.00165 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.40754 * 36.46478 * 10 9 7 32 32 H 1.09000 * 110.37181 * 274.10655 * 10 9 7 33 33 H 1.08998 * 110.97195 * 278.93585 * 11 10 9 34 34 H 1.09005 * 110.96826 * 155.20548 * 11 10 9 35 35 H 0.96997 * 119.99725 * 241.01342 * 13 12 11 36 36 H 1.07997 * 120.47584 * 0.02562 * 17 16 14 37 37 H 1.08001 * 120.29164 * 180.29300 * 18 17 16 38 38 H 1.08004 * 126.17008 * 359.97438 * 20 19 18 39 39 H 1.07996 * 125.39462 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.74558 * 0.02562 * 24 16 14 41 41 H 1.09001 * 110.01829 * 232.38289 * 25 12 11 42 42 H 1.08999 * 110.01296 * 353.77291 * 25 12 11 43 43 H 1.09008 * 110.49182 * 93.73130 * 26 25 12 44 44 H 1.09003 * 110.49279 * 216.25391 * 26 25 12 45 45 H 1.09001 * 110.67165 * 156.24310 * 27 26 25 46 46 H 1.09000 * 110.66716 * 279.37598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4324 2.0841 -1.3981 5 1 1.4818 2.6330 0.7642 6 1 3.5789 1.4222 0.6337 7 6 2.0101 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1474 9 7 1.3382 -2.3807 -0.1853 10 6 -0.0651 -2.5088 -0.6203 11 6 -0.1496 -3.9100 -1.2742 12 6 0.7888 -4.7414 -0.3641 13 7 0.0921 -5.2869 0.8035 14 6 -0.9399 -6.1375 0.6358 15 8 -1.2930 -6.4517 -0.4845 16 6 -1.6418 -6.6864 1.8115 17 6 -1.2162 -6.3142 3.1631 18 6 -1.8809 -6.8272 4.2270 19 6 -2.9574 -7.7154 4.0101 20 6 -3.8049 -8.3912 4.8626 21 7 -4.6499 -9.1024 4.1136 22 6 -4.3876 -8.9160 2.8464 23 7 -3.3403 -8.0578 2.7280 24 6 -2.6857 -7.5473 1.6460 25 6 1.4618 -5.8371 -1.2040 26 6 2.9638 -5.4921 -1.2597 27 6 3.0092 -3.9616 -1.0351 28 6 1.8976 -3.7250 0.0155 29 1 2.2601 -3.8791 1.0319 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3095 -1.7351 -1.3482 32 1 -0.7351 -2.4493 0.2374 33 1 0.2218 -3.8854 -2.2987 34 1 -1.1686 -4.2957 -1.2399 35 1 0.3736 -5.0360 1.6972 36 1 -0.3879 -5.6367 3.3095 37 1 -1.5872 -6.5627 5.2321 38 1 -3.7874 -8.3525 5.9418 39 1 -4.9195 -9.3712 2.0240 40 1 -2.9970 -7.8268 0.6504 41 1 1.3195 -6.8093 -0.7320 42 1 1.0433 -5.8456 -2.2104 43 1 3.5041 -6.0103 -0.4673 44 1 3.3786 -5.7493 -2.2343 45 1 3.9801 -3.6589 -0.6429 46 1 2.7841 -3.4302 -1.9598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991865607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:12 Heat of formation + Delta-G solvation = 84.710111 kcal Electronic energy + Delta-G solvation = -29712.801493 eV Core-core repulsion = 25797.281117 eV Total energy + Delta-G solvation = -3915.520376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.95273 -40.39107 -38.52939 -36.88407 -34.36423 -33.94252 -33.31165 -31.66200 -31.10916 -29.70007 -28.37458 -26.79962 -26.33590 -24.39393 -23.86463 -23.18964 -22.07741 -21.40109 -20.09973 -19.84611 -18.98788 -18.26216 -17.29056 -17.03848 -16.66615 -16.11074 -15.76322 -15.33744 -15.03218 -14.87384 -14.75377 -14.42917 -14.09084 -13.76545 -13.58473 -13.29173 -13.16543 -12.91458 -12.24177 -12.12122 -11.93874 -11.84627 -11.75795 -11.27060 -11.09810 -11.02899 -10.82551 -10.74595 -10.59877 -10.57833 -10.29375 -10.21544 -9.95064 -9.89301 -9.73390 -9.61901 -9.51427 -8.73048 -8.60790 -7.83132 -6.87407 -5.79521 -3.13955 0.40885 0.76907 2.20958 2.53635 2.89974 3.24729 3.35809 3.41498 3.43322 3.44176 4.13777 4.32605 4.36364 4.43606 4.53321 4.61798 4.68865 4.82324 5.07268 5.17627 5.23682 5.27057 5.45328 5.50439 5.57620 5.63995 5.73432 5.77555 5.86314 5.90642 6.01108 6.06481 6.14488 6.18414 6.27292 6.29347 6.33954 6.44514 6.51047 6.68287 6.70487 6.82372 6.89476 7.02100 7.47538 7.54951 7.56470 7.63577 7.74841 8.19762 8.26891 9.13301 9.75478 10.42238 11.32603 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002963 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.423019 B = 9446.434761 C =10447.839872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.144 4.144 12 C 0.161 3.839 13 N -0.692 5.692 14 C 0.570 3.430 15 O -0.535 6.535 16 C -0.147 4.147 17 C -0.099 4.099 18 C -0.079 4.079 19 C 0.006 3.994 20 C -0.021 4.021 21 N -0.454 5.454 22 C 0.151 3.849 23 N -0.377 5.377 24 C 0.124 3.876 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.163 3.837 29 H 0.047 0.953 30 H 0.253 0.747 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.182 0.818 39 H 0.215 0.785 40 H 0.181 0.819 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -16.245 5.078 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.183 4.183 12 C 0.075 3.925 13 N -0.341 5.341 14 C 0.355 3.645 15 O -0.414 6.414 16 C -0.154 4.154 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.102 4.102 20 C -0.174 4.174 21 N -0.167 5.167 22 C -0.125 4.125 23 N -0.049 5.049 24 C 0.001 3.999 25 C -0.150 4.150 26 C -0.163 4.163 27 C -0.170 4.170 28 C 0.055 3.945 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.199 0.801 39 H 0.231 0.769 40 H 0.198 0.802 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.142 -16.775 4.515 17.654 hybrid contribution 1.131 1.608 0.192 1.975 sum -2.011 -15.167 4.707 16.007 Atomic orbital electron populations 1.69961 1.04969 1.25219 1.56045 1.24835 0.95580 0.97817 1.01954 0.86152 0.78681 0.83603 0.77565 1.21604 1.21812 1.20612 1.18979 0.90966 0.82550 1.43230 0.90618 1.44510 1.09704 0.99227 1.78318 1.21438 0.85481 0.91367 0.96762 1.23347 0.98913 0.97984 0.98087 1.21682 0.92885 0.92674 0.85289 1.45738 1.32674 1.45510 1.10201 1.17557 0.80101 0.79212 0.87601 1.90791 1.65740 1.60262 1.24582 1.20559 0.98726 1.01451 0.94649 1.22152 1.00108 0.99613 0.90143 1.20426 0.93292 0.95705 1.00383 1.19788 1.01552 1.04329 0.84515 1.22577 0.95296 1.00065 0.99445 1.69958 1.24294 1.21298 1.01139 1.25209 0.92161 0.98310 0.96779 1.42990 1.23866 1.31527 1.06496 1.21702 0.92368 0.94264 0.91545 1.22285 0.95125 0.97448 1.00158 1.22360 0.95699 0.97364 1.00846 1.22943 0.99358 0.93876 1.00802 1.21755 0.90891 0.85851 0.96053 0.93580 0.93696 0.91286 0.95757 0.91262 0.91186 0.76419 0.83859 0.83041 0.80125 0.76902 0.80222 0.92311 0.91040 0.92303 0.92167 0.92230 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 10.69 55.49 0.59 -25.44 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.39 29.56 -169.99 -5.03 16.37 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.23 -5.99 9.97 -15.06 -0.15 -6.14 16 8 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 9 N -0.59 -13.97 3.03 -161.05 -0.49 -14.46 16 10 C 0.17 4.08 5.42 -2.53 -0.01 4.06 16 11 C -0.14 -2.77 5.71 -24.74 -0.14 -2.91 16 12 C 0.16 2.68 0.76 -129.37 -0.10 2.59 16 13 N -0.69 -10.10 5.19 -46.38 -0.24 -10.34 16 14 C 0.57 8.22 6.96 -12.48 -0.09 8.13 16 15 O -0.54 -8.99 14.11 5.28 0.07 -8.92 16 16 C -0.15 -1.75 5.98 -103.47 -0.62 -2.37 16 17 C -0.10 -1.00 9.73 -37.22 -0.36 -1.36 16 18 C -0.08 -0.73 10.09 -39.41 -0.40 -1.13 16 19 C 0.01 0.07 6.78 -84.02 -0.57 -0.50 16 20 C -0.02 -0.23 12.00 -16.97 -0.20 -0.43 16 21 N -0.45 -5.37 11.19 -13.78 -0.15 -5.52 16 22 C 0.15 1.52 12.76 -89.37 -1.14 0.38 16 23 N -0.38 -4.10 2.94 -61.93 -0.18 -4.28 16 24 C 0.12 1.36 10.51 -16.22 -0.17 1.19 16 25 C -0.11 -1.67 5.30 -25.79 -0.14 -1.80 16 26 C -0.12 -1.72 6.83 -25.17 -0.17 -1.89 16 27 C -0.13 -2.19 6.21 -24.87 -0.15 -2.34 16 28 C 0.16 3.05 3.68 -65.60 -0.24 2.81 16 29 H 0.05 0.85 8.00 -51.93 -0.42 0.44 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 32 H 0.02 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.07 1.32 7.62 -51.93 -0.40 0.92 16 34 H 0.07 1.37 6.54 -51.93 -0.34 1.03 16 35 H 0.40 5.15 6.62 -40.82 -0.27 4.88 16 36 H 0.14 1.20 6.58 -52.49 -0.35 0.86 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.18 1.72 7.56 -52.49 -0.40 1.32 16 41 H 0.06 0.86 7.61 -51.93 -0.39 0.46 16 42 H 0.07 1.11 7.37 -51.93 -0.38 0.72 16 43 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -32.05 367.86 -10.85 -42.91 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.22 Total: 6.09 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.75 Total: -1.94 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.47 Total: -60.05 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.05 -10.85 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991865607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.616 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds