Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47385 * 273.08627 * 3 2 1 5 5 H 1.48501 * 109.47379 * 33.08358 * 3 2 1 6 6 H 1.48501 * 109.47501 * 153.08729 * 3 2 1 7 7 C 1.38817 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99526 * 189.03585 * 7 2 1 9 9 N 1.36928 * 120.00035 * 9.04299 * 7 2 1 10 10 C 1.47476 * 125.57101 * 10.98405 * 9 7 2 11 11 C 1.54859 * 104.77560 * 155.29377 * 10 9 7 12 12 C 1.54922 * 101.79772 * 37.07387 * 11 10 9 13 13 N 1.46501 * 112.33488 * 86.74808 * 12 11 10 14 14 C 1.34774 * 119.99661 * 61.01564 * 13 12 11 15 15 O 1.21601 * 120.00823 * 359.97438 * 14 13 12 16 16 C 1.47521 * 119.99826 * 180.02562 * 14 13 12 17 17 C 1.46505 * 120.16412 * 359.71902 * 16 14 13 18 18 C 1.35536 * 119.04649 * 179.70948 * 17 16 14 19 19 C 1.41234 * 119.42610 * 0.56729 * 18 17 16 20 20 C 1.37906 * 132.97340 * 179.70201 * 19 18 17 21 21 N 1.33449 * 107.66095 * 180.02562 * 20 19 18 22 22 C 1.30749 * 109.93589 * 359.97438 * 21 20 19 23 23 N 1.35916 * 109.20695 * 359.97438 * 22 21 20 24 24 C 1.36325 * 120.16947 * 180.02562 * 16 14 13 25 25 C 1.53590 * 109.08779 * 211.86350 * 12 11 10 26 26 C 1.54217 * 106.67288 * 113.07357 * 25 12 11 27 27 C 1.54753 * 104.16039 * 335.05990 * 26 25 12 28 28 C 1.46984 * 125.58153 * 190.95896 * 9 7 2 29 29 H 1.09000 * 112.53706 * 58.62324 * 28 9 7 30 30 H 0.97001 * 120.00165 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.40754 * 36.46478 * 10 9 7 32 32 H 1.09000 * 110.37181 * 274.10655 * 10 9 7 33 33 H 1.08998 * 110.97195 * 278.93585 * 11 10 9 34 34 H 1.09005 * 110.96826 * 155.20548 * 11 10 9 35 35 H 0.96997 * 119.99725 * 241.01342 * 13 12 11 36 36 H 1.07997 * 120.47584 * 0.02562 * 17 16 14 37 37 H 1.08001 * 120.29164 * 180.29300 * 18 17 16 38 38 H 1.08004 * 126.17008 * 359.97438 * 20 19 18 39 39 H 1.07996 * 125.39462 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.74558 * 0.02562 * 24 16 14 41 41 H 1.09001 * 110.01829 * 232.38289 * 25 12 11 42 42 H 1.08999 * 110.01296 * 353.77291 * 25 12 11 43 43 H 1.09008 * 110.49182 * 93.73130 * 26 25 12 44 44 H 1.09003 * 110.49279 * 216.25391 * 26 25 12 45 45 H 1.09001 * 110.67165 * 156.24310 * 27 26 25 46 46 H 1.09000 * 110.66716 * 279.37598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4324 2.0841 -1.3981 5 1 1.4818 2.6330 0.7642 6 1 3.5789 1.4222 0.6337 7 6 2.0101 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1474 9 7 1.3382 -2.3807 -0.1853 10 6 -0.0651 -2.5088 -0.6203 11 6 -0.1496 -3.9100 -1.2742 12 6 0.7888 -4.7414 -0.3641 13 7 0.0921 -5.2869 0.8035 14 6 -0.9399 -6.1375 0.6358 15 8 -1.2930 -6.4517 -0.4845 16 6 -1.6418 -6.6864 1.8115 17 6 -1.2162 -6.3142 3.1631 18 6 -1.8809 -6.8272 4.2270 19 6 -2.9574 -7.7154 4.0101 20 6 -3.8049 -8.3912 4.8626 21 7 -4.6499 -9.1024 4.1136 22 6 -4.3876 -8.9160 2.8464 23 7 -3.3403 -8.0578 2.7280 24 6 -2.6857 -7.5473 1.6460 25 6 1.4618 -5.8371 -1.2040 26 6 2.9638 -5.4921 -1.2597 27 6 3.0092 -3.9616 -1.0351 28 6 1.8976 -3.7250 0.0155 29 1 2.2601 -3.8791 1.0319 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3095 -1.7351 -1.3482 32 1 -0.7351 -2.4493 0.2374 33 1 0.2218 -3.8854 -2.2987 34 1 -1.1686 -4.2957 -1.2399 35 1 0.3736 -5.0360 1.6972 36 1 -0.3879 -5.6367 3.3095 37 1 -1.5872 -6.5627 5.2321 38 1 -3.7874 -8.3525 5.9418 39 1 -4.9195 -9.3712 2.0240 40 1 -2.9970 -7.8268 0.6504 41 1 1.3195 -6.8093 -0.7320 42 1 1.0433 -5.8456 -2.2104 43 1 3.5041 -6.0103 -0.4673 44 1 3.3786 -5.7493 -2.2343 45 1 3.9801 -3.6589 -0.6429 46 1 2.7841 -3.4302 -1.9598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991865607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = 67.348316 kcal Electronic energy + Delta-G solvation = -29713.554357 eV Core-core repulsion = 25797.281117 eV Total energy + Delta-G solvation = -3916.273240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.74234 -41.68765 -39.80431 -37.79851 -36.03541 -35.02490 -34.27743 -33.37949 -32.22448 -31.20793 -29.15092 -28.41376 -27.71839 -25.73085 -25.34219 -23.97507 -22.90826 -22.68708 -21.63908 -21.13785 -20.28928 -19.19026 -18.83736 -18.29064 -17.62299 -16.98519 -16.93733 -16.84274 -16.37132 -16.14052 -15.67076 -15.61177 -15.40290 -15.06849 -14.73794 -14.48723 -14.48075 -14.01726 -13.87220 -13.55897 -13.26131 -12.95411 -12.88017 -12.80983 -12.66526 -12.60976 -12.29817 -12.01636 -11.88455 -11.78816 -11.73369 -11.66513 -11.48544 -11.39735 -11.23908 -10.96525 -10.65813 -10.40586 -9.98226 -8.82457 -8.60247 -7.84376 -5.19361 -0.44831 0.00195 1.38232 1.47754 1.49228 1.57453 1.60919 2.07529 2.15816 2.50068 2.52243 3.31534 3.34975 3.38990 3.54743 3.63364 3.65536 3.75951 3.84063 3.91053 3.94462 3.97103 4.37180 4.38018 4.44677 4.48912 4.51644 4.61257 4.64927 4.76988 4.81917 4.87324 4.91137 4.95868 5.11189 5.13026 5.17212 5.24214 5.34495 5.42816 5.47675 5.53696 5.55661 5.62389 5.67373 5.73780 6.04860 6.21867 6.48863 6.78059 7.09828 7.12918 7.79281 8.45820 9.27037 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002963 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.423019 B = 9446.434761 C =10447.839872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.972 3.028 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.228 4.228 8 H 0.084 0.916 9 N -0.609 5.609 10 C 0.187 3.813 11 C -0.131 4.131 12 C 0.171 3.829 13 N -0.691 5.691 14 C 0.572 3.428 15 O -0.562 6.562 16 C -0.161 4.161 17 C -0.111 4.111 18 C -0.071 4.071 19 C -0.014 4.014 20 C -0.026 4.026 21 N -0.483 5.483 22 C 0.153 3.847 23 N -0.384 5.384 24 C 0.129 3.871 25 C -0.105 4.105 26 C -0.110 4.110 27 C -0.125 4.125 28 C 0.154 3.846 29 H 0.057 0.943 30 H 0.245 0.755 31 H 0.029 0.971 32 H -0.006 1.006 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.409 0.591 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.204 0.796 39 H 0.245 0.755 40 H 0.190 0.810 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -18.070 5.948 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.357 4.357 8 H 0.102 0.898 9 N -0.333 5.333 10 C 0.062 3.938 11 C -0.170 4.170 12 C 0.084 3.916 13 N -0.341 5.341 14 C 0.359 3.641 15 O -0.442 6.442 16 C -0.167 4.167 17 C -0.131 4.131 18 C -0.090 4.090 19 C -0.121 4.121 20 C -0.178 4.178 21 N -0.196 5.196 22 C -0.122 4.122 23 N -0.056 5.056 24 C 0.006 3.994 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.165 4.165 28 C 0.047 3.953 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.012 0.988 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.175 0.825 37 H 0.199 0.801 38 H 0.221 0.779 39 H 0.261 0.739 40 H 0.207 0.793 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.682 -18.635 5.415 19.479 hybrid contribution 0.614 2.102 -0.048 2.190 sum -1.067 -16.533 5.368 17.415 Atomic orbital electron populations 1.70161 1.06410 1.25169 1.58061 1.25601 0.96314 1.00957 1.02903 0.85162 0.78003 0.79667 0.77089 1.21903 1.22660 1.18932 1.19346 0.91488 0.83609 1.41286 0.89835 1.44695 1.09633 1.00638 1.78378 1.21089 0.85362 0.92612 0.94764 1.23158 0.99555 0.95881 0.98442 1.21494 0.91630 0.92790 0.85659 1.45662 1.32906 1.45528 1.10019 1.17847 0.79619 0.78570 0.88017 1.90772 1.66392 1.61224 1.25859 1.20391 0.99387 1.02451 0.94502 1.22282 1.00988 1.00412 0.89443 1.20766 0.92182 0.94466 1.01577 1.20159 1.02315 1.05044 0.84616 1.23051 0.94732 0.99400 1.00590 1.69990 1.25232 1.22344 1.02054 1.25925 0.91583 0.97406 0.97283 1.43113 1.24158 1.31817 1.06546 1.21815 0.91881 0.93637 0.92043 1.22224 0.95776 0.96952 0.99418 1.22301 0.94946 0.94714 1.02828 1.22808 0.98604 0.96231 0.98886 1.22026 0.92165 0.83837 0.97243 0.92495 0.94613 0.95296 0.98808 0.91129 0.91610 0.75387 0.82498 0.80103 0.77932 0.73871 0.79279 0.91319 0.91562 0.90060 0.90260 0.91522 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.16 10.69 21.65 0.23 -55.93 16 2 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 3 Si 0.97 44.62 29.56 68.60 2.03 46.65 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.23 -12.02 9.97 84.04 0.84 -11.18 16 8 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 9 N -0.61 -29.07 3.03 -663.44 -2.01 -31.08 16 10 C 0.19 9.14 5.42 86.83 0.47 9.61 16 11 C -0.13 -5.13 5.71 31.89 0.18 -4.95 16 12 C 0.17 5.55 0.76 5.19 0.00 5.56 16 13 N -0.69 -19.48 5.19 -418.89 -2.17 -21.66 16 14 C 0.57 16.03 6.96 86.69 0.60 16.63 16 15 O -0.56 -18.53 14.11 -4.03 -0.06 -18.59 16 16 C -0.16 -3.66 5.98 -19.12 -0.11 -3.77 16 17 C -0.11 -2.05 9.73 23.80 0.23 -1.82 16 18 C -0.07 -1.16 10.09 22.38 0.23 -0.94 16 19 C -0.01 -0.28 6.78 38.81 0.26 -0.02 16 20 C -0.03 -0.51 12.00 84.37 1.01 0.50 16 21 N -0.48 -10.72 11.19 -197.52 -2.21 -12.93 16 22 C 0.15 2.84 12.76 179.91 2.30 5.13 16 23 N -0.38 -7.79 2.94 -349.86 -1.03 -8.82 16 24 C 0.13 2.68 10.51 83.54 0.88 3.56 16 25 C -0.10 -2.90 5.30 31.20 0.17 -2.73 16 26 C -0.11 -2.67 6.83 31.60 0.22 -2.45 16 27 C -0.13 -3.99 6.21 31.80 0.20 -3.79 16 28 C 0.15 5.61 3.68 46.24 0.17 5.78 16 29 H 0.06 1.99 8.00 -2.39 -0.02 1.97 16 30 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.03 1.62 6.94 -2.38 -0.02 1.60 16 32 H -0.01 -0.33 8.07 -2.39 -0.02 -0.35 16 33 H 0.07 2.72 7.62 -2.39 -0.02 2.70 16 34 H 0.07 2.63 6.54 -2.38 -0.02 2.61 16 35 H 0.41 10.01 6.62 -92.71 -0.61 9.40 16 36 H 0.16 2.35 6.58 -2.91 -0.02 2.33 16 37 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 38 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.25 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.19 3.42 7.56 -2.91 -0.02 3.40 16 41 H 0.07 1.80 7.61 -2.39 -0.02 1.78 16 42 H 0.07 1.92 7.37 -2.39 -0.02 1.91 16 43 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.05 1.90 8.09 -2.39 -0.02 1.88 16 Total: -1.00 -71.12 367.86 3.28 -67.84 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.40 Total: 22.48 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 8.10 Total: 12.03 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -7.19 Total: -130.42 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.06 Total: -18.59 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.12 3.28 -67.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991865607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.189 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds