Wall clock time and date at job start Sat Apr 11 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48504 * 109.46983 * 240.00521 * 3 2 1 5 5 H 1.48503 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00212 * 3 2 1 7 7 C 1.38812 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.49307 * 127.09851 * 0.04094 * 9 7 2 11 11 C 1.56227 * 106.50561 * 171.30926 * 10 9 7 12 12 C 1.52135 * 100.81812 * 336.55610 * 11 10 9 13 13 N 1.46498 * 111.09307 * 286.02468 * 12 11 10 14 14 C 1.34780 * 119.99809 * 288.30455 * 13 12 11 15 15 O 1.21722 * 120.00194 * 0.02562 * 14 13 12 16 16 C 1.46570 * 120.00114 * 179.97438 * 14 13 12 17 17 C 1.40556 * 126.57970 * 359.69490 * 16 14 13 18 18 N 1.30745 * 108.74095 * 179.81327 * 17 16 14 19 19 N 1.40012 * 109.60546 * 0.44849 * 18 17 16 20 20 C 1.36237 * 132.01096 * 179.71467 * 19 18 17 21 21 C 1.35195 * 120.70899 * 180.02562 * 20 19 18 22 22 C 1.40161 * 120.31409 * 0.02562 * 21 20 19 23 23 C 1.36449 * 119.41326 * 359.95487 * 22 21 20 24 24 C 1.36572 * 107.90680 * 359.71626 * 19 18 17 25 25 C 1.51229 * 122.10007 * 151.18698 * 12 11 10 26 26 C 1.55794 * 104.61902 * 218.75222 * 25 12 11 27 27 C 1.56289 * 105.88759 * 7.24345 * 26 25 12 28 28 C 1.42700 * 127.10974 * 180.02562 * 9 7 2 29 29 H 1.08996 * 108.15810 * 104.18394 * 28 9 7 30 30 H 0.96995 * 119.99964 * 359.97438 * 1 2 3 31 31 H 1.08991 * 110.04996 * 290.57269 * 10 9 7 32 32 H 1.08999 * 110.04295 * 51.99612 * 10 9 7 33 33 H 1.09004 * 111.15113 * 94.44921 * 11 10 9 34 34 H 1.09005 * 111.14992 * 218.62429 * 11 10 9 35 35 H 0.96993 * 120.00768 * 108.30912 * 13 12 11 36 36 H 1.07996 * 125.62750 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.64966 * 0.02562 * 20 19 18 38 38 H 1.07991 * 119.84285 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.29516 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.37487 * 180.02562 * 23 22 21 41 41 H 1.09001 * 110.40332 * 337.53163 * 25 12 11 42 42 H 1.08992 * 110.40869 * 99.85190 * 25 12 11 43 43 H 1.08997 * 110.19423 * 248.13905 * 26 25 12 44 44 H 1.09002 * 110.17104 * 126.33618 * 26 25 12 45 45 H 1.09002 * 110.97072 * 266.12667 * 27 26 25 46 46 H 1.09003 * 110.97182 * 142.40076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1560 -2.5727 -0.0009 11 6 -0.4133 -4.0969 -0.2270 12 6 0.8806 -4.5060 -0.9146 13 7 0.9160 -4.0281 -2.2990 14 6 0.1245 -4.5982 -3.2291 15 8 -0.6200 -5.5098 -2.9188 16 6 0.1595 -4.1198 -4.6141 17 6 0.9560 -3.0783 -5.1207 18 7 0.7130 -2.9472 -6.3986 19 7 -0.2542 -3.8804 -6.7911 20 6 -0.8383 -4.1367 -7.9949 21 6 -1.7665 -5.1120 -8.1183 22 6 -2.1426 -5.8756 -7.0047 23 6 -1.5629 -5.6267 -5.7948 24 6 -0.6030 -4.6114 -5.6915 25 6 1.4462 -5.9036 -0.7968 26 6 2.9864 -5.6966 -0.6873 27 6 3.2029 -4.1539 -0.5611 28 6 1.8807 -3.7027 -0.0005 29 1 1.7791 -4.1143 1.0036 30 1 -0.4850 0.8400 0.0004 31 1 -0.5715 -2.2617 0.9576 32 1 -0.6044 -1.9933 -0.8079 33 1 -0.5372 -4.6198 0.7213 34 1 -1.2731 -4.2583 -0.8774 35 1 1.5090 -3.3015 -2.5463 36 1 1.6553 -2.4861 -4.5492 37 1 -0.5570 -3.5547 -8.8600 38 1 -2.2209 -5.3030 -9.0791 39 1 -2.8843 -6.6543 -7.1035 40 1 -1.8408 -6.2059 -4.9267 41 1 1.0640 -6.3940 0.0985 42 1 1.2017 -6.4885 -1.6834 43 1 3.4813 -6.0734 -1.5823 44 1 3.3718 -6.2035 0.1974 45 1 3.3868 -3.7047 -1.5371 46 1 4.0161 -3.9292 0.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992329266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:20 Heat of formation + Delta-G solvation = 114.128124 kcal Electronic energy + Delta-G solvation = -30424.825802 eV Core-core repulsion = 26510.581087 eV Total energy + Delta-G solvation = -3914.244716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17067 -40.27656 -37.90986 -37.18156 -34.37623 -33.04750 -32.85934 -31.66814 -30.86976 -29.96399 -28.58446 -26.88835 -25.73404 -24.06106 -23.99439 -23.41320 -22.27607 -20.55931 -20.31831 -19.54191 -18.64138 -17.76544 -16.87594 -16.45342 -16.29458 -15.82461 -15.81767 -15.60135 -14.80276 -14.64827 -14.52790 -14.13719 -13.88983 -13.70421 -13.37945 -13.22904 -12.54399 -12.37437 -12.27725 -12.16298 -11.97833 -11.82913 -11.36167 -11.32030 -10.98480 -10.91486 -10.86595 -10.74606 -10.53592 -10.42461 -10.27116 -9.99092 -9.90361 -9.65618 -9.55340 -9.47675 -9.06451 -8.64594 -8.37502 -7.68290 -6.84405 -5.73157 -3.07883 0.52815 0.88934 2.06674 2.28051 3.11806 3.38937 3.44056 3.45366 3.74001 3.93799 4.17519 4.46693 4.47312 4.53847 4.67966 4.69356 4.94486 5.18795 5.26896 5.29195 5.29996 5.44773 5.49840 5.59051 5.65931 5.78835 5.87813 5.90347 6.01139 6.02473 6.06423 6.20665 6.22755 6.31635 6.37796 6.38690 6.43122 6.50206 6.56628 6.69628 6.73110 6.88171 6.96888 7.32139 7.39994 7.55198 7.63337 7.80486 8.21787 8.23229 8.87963 9.14613 9.81339 10.50980 11.38738 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.003969 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.599804 B = 7052.144613 C = 8333.465361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.584 5.584 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.136 3.864 13 N -0.686 5.686 14 C 0.598 3.402 15 O -0.562 6.562 16 C -0.299 4.299 17 C 0.123 3.877 18 N -0.321 5.321 19 N -0.269 5.269 20 C 0.108 3.892 21 C -0.163 4.163 22 C -0.085 4.085 23 C -0.099 4.099 24 C 0.156 3.844 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.114 4.114 28 C 0.157 3.843 29 H 0.022 0.978 30 H 0.253 0.747 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.200 0.800 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -12.601 -13.605 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.055 3.945 11 C -0.178 4.178 12 C 0.048 3.952 13 N -0.335 5.335 14 C 0.386 3.614 15 O -0.442 6.442 16 C -0.314 4.314 17 C -0.057 4.057 18 N -0.142 5.142 19 N -0.033 5.033 20 C -0.019 4.019 21 C -0.184 4.184 22 C -0.108 4.108 23 C -0.119 4.119 24 C 0.036 3.964 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.152 4.152 28 C 0.047 3.953 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.217 0.783 37 H 0.187 0.813 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.179 0.821 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.299 -12.182 -14.352 18.870 hybrid contribution 0.512 1.060 0.589 1.316 sum -0.787 -11.122 -13.763 17.713 Atomic orbital electron populations 1.69913 1.04889 1.25223 1.56350 1.24781 0.95579 0.97567 1.02041 0.86268 0.78507 0.83475 0.77888 1.21149 1.21703 1.21230 1.18960 0.90227 0.82290 1.44558 0.90373 1.43656 1.01737 0.99194 1.86100 1.22005 0.83123 0.88716 1.00660 1.22785 0.96576 0.99385 0.99032 1.21475 0.98424 0.93872 0.81473 1.45413 1.42539 1.37541 1.08021 1.16754 0.79833 0.81823 0.83001 1.90699 1.40992 1.30832 1.81723 1.19920 1.09431 1.06935 0.95065 1.24189 0.96149 0.94283 0.91120 1.77600 1.09267 1.12258 1.15112 1.46101 1.26780 1.23365 1.07095 1.21535 0.94731 0.98760 0.86849 1.20890 0.99439 0.97132 1.00957 1.21299 0.98814 0.98898 0.91787 1.20929 0.94776 0.96353 0.99804 1.19335 0.96305 0.93634 0.87173 1.21878 0.94708 0.96249 1.02164 1.22832 0.95887 0.95880 1.00862 1.21829 0.97803 0.94564 1.01027 1.20847 0.91720 0.87409 0.95321 0.96112 0.93661 0.94814 0.91693 0.91811 0.91341 0.76397 0.78331 0.81346 0.82728 0.83898 0.82137 0.91280 0.91148 0.92314 0.92049 0.91674 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.55 55.49 0.59 -25.69 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.09 10.29 -15.06 -0.15 -6.25 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.56 16 9 N -0.58 -14.02 3.12 -162.66 -0.51 -14.53 16 10 C 0.18 4.30 5.33 -0.75 0.00 4.30 16 11 C -0.14 -2.80 6.19 -25.44 -0.16 -2.96 16 12 C 0.14 2.50 0.40 -130.69 -0.05 2.45 16 13 N -0.69 -12.40 4.38 -47.88 -0.21 -12.61 16 14 C 0.60 10.91 7.11 -12.90 -0.09 10.82 16 15 O -0.56 -11.14 13.86 5.17 0.07 -11.07 16 16 C -0.30 -4.97 6.17 -104.68 -0.65 -5.61 16 17 C 0.12 1.89 11.44 -17.14 -0.20 1.69 16 18 N -0.32 -4.96 12.57 30.75 0.39 -4.58 16 19 N -0.27 -3.72 3.86 -10.54 -0.04 -3.76 16 20 C 0.11 1.03 11.17 -16.68 -0.19 0.84 16 21 C -0.16 -1.19 9.98 -39.94 -0.40 -1.59 16 22 C -0.08 -0.73 10.09 -39.51 -0.40 -1.13 16 23 C -0.10 -1.23 9.73 -39.53 -0.38 -1.61 16 24 C 0.16 2.34 6.76 -84.07 -0.57 1.78 16 25 C -0.11 -1.78 6.04 -26.13 -0.16 -1.94 16 26 C -0.12 -1.66 6.94 -23.47 -0.16 -1.83 16 27 C -0.11 -1.89 6.46 -26.20 -0.17 -2.05 16 28 C 0.16 3.13 2.64 -68.70 -0.18 2.95 16 29 H 0.02 0.45 7.94 -51.93 -0.41 0.03 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.89 7.98 -51.93 -0.41 0.47 16 32 H 0.06 1.75 7.04 -51.93 -0.37 1.38 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.43 7.18 -51.93 -0.37 1.06 16 35 H 0.40 7.22 6.73 -40.82 -0.27 6.94 16 36 H 0.20 2.67 7.46 -52.49 -0.39 2.28 16 37 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.16 2.07 7.12 -52.49 -0.37 1.70 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.19 6.86 -51.93 -0.36 0.83 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.08 7.38 -51.93 -0.38 0.69 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.58 368.16 -9.47 -42.05 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.27 Total: 8.45 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.01 Total: -0.32 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.21 Total: -61.16 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.58 -9.47 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992329266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.173 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds