Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00202 * 2 1 4 4 H 1.48504 * 109.46983 * 240.00521 * 3 2 1 5 5 H 1.48503 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00212 * 3 2 1 7 7 C 1.38812 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.49307 * 127.09851 * 0.04094 * 9 7 2 11 11 C 1.56227 * 106.50561 * 171.30926 * 10 9 7 12 12 C 1.52135 * 100.81812 * 336.55610 * 11 10 9 13 13 N 1.46498 * 111.09307 * 286.02468 * 12 11 10 14 14 C 1.34780 * 119.99809 * 288.30455 * 13 12 11 15 15 O 1.21722 * 120.00194 * 0.02562 * 14 13 12 16 16 C 1.46570 * 120.00114 * 179.97438 * 14 13 12 17 17 C 1.40556 * 126.57970 * 359.69490 * 16 14 13 18 18 N 1.30745 * 108.74095 * 179.81327 * 17 16 14 19 19 N 1.40012 * 109.60546 * 0.44849 * 18 17 16 20 20 C 1.36237 * 132.01096 * 179.71467 * 19 18 17 21 21 C 1.35195 * 120.70899 * 180.02562 * 20 19 18 22 22 C 1.40161 * 120.31409 * 0.02562 * 21 20 19 23 23 C 1.36449 * 119.41326 * 359.95487 * 22 21 20 24 24 C 1.36572 * 107.90680 * 359.71626 * 19 18 17 25 25 C 1.51229 * 122.10007 * 151.18698 * 12 11 10 26 26 C 1.55794 * 104.61902 * 218.75222 * 25 12 11 27 27 C 1.56289 * 105.88759 * 7.24345 * 26 25 12 28 28 C 1.42700 * 127.10974 * 180.02562 * 9 7 2 29 29 H 1.08996 * 108.15810 * 104.18394 * 28 9 7 30 30 H 0.96995 * 119.99964 * 359.97438 * 1 2 3 31 31 H 1.08991 * 110.04996 * 290.57269 * 10 9 7 32 32 H 1.08999 * 110.04295 * 51.99612 * 10 9 7 33 33 H 1.09004 * 111.15113 * 94.44921 * 11 10 9 34 34 H 1.09005 * 111.14992 * 218.62429 * 11 10 9 35 35 H 0.96993 * 120.00768 * 108.30912 * 13 12 11 36 36 H 1.07996 * 125.62750 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.64966 * 0.02562 * 20 19 18 38 38 H 1.07991 * 119.84285 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.29516 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.37487 * 180.02562 * 23 22 21 41 41 H 1.09001 * 110.40332 * 337.53163 * 25 12 11 42 42 H 1.08992 * 110.40869 * 99.85190 * 25 12 11 43 43 H 1.08997 * 110.19423 * 248.13905 * 26 25 12 44 44 H 1.09002 * 110.17104 * 126.33618 * 26 25 12 45 45 H 1.09002 * 110.97072 * 266.12667 * 27 26 25 46 46 H 1.09003 * 110.97182 * 142.40076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1560 -2.5727 -0.0009 11 6 -0.4133 -4.0969 -0.2270 12 6 0.8806 -4.5060 -0.9146 13 7 0.9160 -4.0281 -2.2990 14 6 0.1245 -4.5982 -3.2291 15 8 -0.6200 -5.5098 -2.9188 16 6 0.1595 -4.1198 -4.6141 17 6 0.9560 -3.0783 -5.1207 18 7 0.7130 -2.9472 -6.3986 19 7 -0.2542 -3.8804 -6.7911 20 6 -0.8383 -4.1367 -7.9949 21 6 -1.7665 -5.1120 -8.1183 22 6 -2.1426 -5.8756 -7.0047 23 6 -1.5629 -5.6267 -5.7948 24 6 -0.6030 -4.6114 -5.6915 25 6 1.4462 -5.9036 -0.7968 26 6 2.9864 -5.6966 -0.6873 27 6 3.2029 -4.1539 -0.5611 28 6 1.8807 -3.7027 -0.0005 29 1 1.7791 -4.1143 1.0036 30 1 -0.4850 0.8400 0.0004 31 1 -0.5715 -2.2617 0.9576 32 1 -0.6044 -1.9933 -0.8079 33 1 -0.5372 -4.6198 0.7213 34 1 -1.2731 -4.2583 -0.8774 35 1 1.5090 -3.3015 -2.5463 36 1 1.6553 -2.4861 -4.5492 37 1 -0.5570 -3.5547 -8.8600 38 1 -2.2209 -5.3030 -9.0791 39 1 -2.8843 -6.6543 -7.1035 40 1 -1.8408 -6.2059 -4.9267 41 1 1.0640 -6.3940 0.0985 42 1 1.2017 -6.4885 -1.6834 43 1 3.4813 -6.0734 -1.5823 44 1 3.3718 -6.2035 0.1974 45 1 3.3868 -3.7047 -1.5371 46 1 4.0161 -3.9292 0.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992329266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = 94.055656 kcal Electronic energy + Delta-G solvation = -30425.696210 eV Core-core repulsion = 26510.581087 eV Total energy + Delta-G solvation = -3915.115123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.17765 -41.78512 -39.27453 -38.17164 -36.11782 -34.36553 -33.95704 -33.48482 -31.83150 -31.61735 -29.69246 -28.50651 -27.25619 -25.92677 -24.85873 -24.58040 -23.32888 -22.19943 -21.60157 -21.16235 -20.06861 -18.93210 -18.31573 -17.84058 -17.30163 -17.21704 -16.87743 -16.69542 -16.33613 -16.02808 -15.74817 -15.67470 -15.59453 -15.05530 -14.79403 -14.27918 -14.11870 -14.01758 -13.48392 -13.16315 -13.04040 -12.99082 -12.95806 -12.85854 -12.82390 -12.58229 -12.17317 -12.09379 -12.03127 -11.91729 -11.77545 -11.55000 -11.48738 -11.32337 -11.00370 -10.70055 -10.55268 -10.48244 -9.83810 -8.84428 -8.71117 -7.81171 -5.16766 -0.34058 0.00053 1.08888 1.15229 1.48578 1.50577 1.56597 2.22918 2.41570 2.52623 2.66964 3.13167 3.19074 3.39008 3.55149 3.77804 3.85805 3.87014 3.93709 4.11368 4.13469 4.15132 4.29092 4.38464 4.45563 4.50420 4.51645 4.62578 4.65967 4.73820 4.84945 4.97719 5.01691 5.09217 5.11080 5.14928 5.22428 5.24872 5.27354 5.31545 5.44446 5.52368 5.59409 5.63550 5.72210 5.78786 5.89418 6.20637 6.34377 6.80826 7.06777 7.47502 7.79813 8.52743 9.30402 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.003969 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.599804 B = 7052.144613 C = 8333.465361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.061 4.061 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.302 1.302 6 H -0.279 1.279 7 C -0.231 4.231 8 H 0.089 0.911 9 N -0.596 5.596 10 C 0.192 3.808 11 C -0.128 4.128 12 C 0.142 3.858 13 N -0.688 5.688 14 C 0.598 3.402 15 O -0.585 6.585 16 C -0.345 4.345 17 C 0.121 3.879 18 N -0.345 5.345 19 N -0.271 5.271 20 C 0.090 3.910 21 C -0.139 4.139 22 C -0.050 4.050 23 C -0.139 4.139 24 C 0.148 3.852 25 C -0.106 4.106 26 C -0.102 4.102 27 C -0.109 4.109 28 C 0.146 3.854 29 H 0.019 0.981 30 H 0.244 0.756 31 H 0.000 1.000 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.398 0.602 36 H 0.205 0.795 37 H 0.200 0.800 38 H 0.209 0.791 39 H 0.184 0.816 40 H 0.146 0.854 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -14.582 -16.268 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.200 1.200 5 H -0.229 1.229 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.319 5.319 10 C 0.068 3.932 11 C -0.167 4.167 12 C 0.055 3.945 13 N -0.337 5.337 14 C 0.388 3.612 15 O -0.468 6.468 16 C -0.360 4.360 17 C -0.059 4.059 18 N -0.167 5.167 19 N -0.035 5.035 20 C -0.036 4.036 21 C -0.160 4.160 22 C -0.073 4.073 23 C -0.159 4.159 24 C 0.026 3.974 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.148 4.148 28 C 0.037 3.963 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.222 0.778 37 H 0.217 0.783 38 H 0.225 0.775 39 H 0.202 0.798 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.687 -14.188 -17.026 22.173 hybrid contribution 0.163 1.563 1.213 1.985 sum -0.524 -12.625 -15.813 20.241 Atomic orbital electron populations 1.70144 1.06409 1.25086 1.58334 1.25550 0.96278 1.00752 1.02844 0.85252 0.77106 0.79298 0.78270 1.19984 1.22881 1.20549 1.19364 0.90881 0.83135 1.42623 0.89303 1.43765 1.01781 1.00400 1.85946 1.21653 0.83441 0.90810 0.97332 1.22639 0.97438 0.96678 0.99928 1.21459 0.96400 0.95290 0.81396 1.45407 1.42776 1.37605 1.07887 1.16987 0.79156 0.81347 0.83690 1.90657 1.41928 1.31953 1.82304 1.19824 1.12253 1.09106 0.94814 1.24262 0.96143 0.94101 0.91399 1.77480 1.10682 1.13595 1.14935 1.46343 1.26407 1.22667 1.08085 1.22483 0.94934 0.99894 0.86291 1.21587 0.97277 0.94606 1.02503 1.21889 0.96966 0.98162 0.90269 1.20978 0.96359 0.97128 1.01411 1.19594 0.96450 0.94147 0.87175 1.21869 0.96042 0.94189 1.02404 1.22764 0.94357 0.94048 1.02832 1.21844 0.95950 0.96156 1.00807 1.21062 0.94332 0.85290 0.95602 0.96414 0.94708 0.98159 0.95454 0.90187 0.92478 0.76624 0.77834 0.78319 0.77460 0.79841 0.83579 0.90091 0.91839 0.90707 0.89654 0.91879 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 10.55 21.65 0.23 -57.11 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 3 Si 0.97 45.30 29.55 68.60 2.03 47.33 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.23 -12.38 10.29 84.03 0.86 -11.52 16 8 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 9 N -0.60 -29.57 3.12 -668.53 -2.09 -31.65 16 10 C 0.19 9.83 5.33 86.96 0.46 10.30 16 11 C -0.13 -5.38 6.19 31.43 0.19 -5.18 16 12 C 0.14 5.33 0.40 4.33 0.00 5.34 16 13 N -0.69 -25.94 4.38 -423.60 -1.86 -27.80 16 14 C 0.60 22.99 7.11 86.42 0.61 23.61 16 15 O -0.59 -24.29 13.86 -4.42 -0.06 -24.35 16 16 C -0.35 -12.10 6.17 -19.90 -0.12 -12.23 16 17 C 0.12 3.93 11.44 85.42 0.98 4.91 16 18 N -0.35 -10.88 12.57 -56.62 -0.71 -11.59 16 19 N -0.27 -7.31 3.86 -187.27 -0.72 -8.04 16 20 C 0.09 1.42 11.17 83.31 0.93 2.35 16 21 C -0.14 -1.32 9.98 22.04 0.22 -1.10 16 22 C -0.05 -0.66 10.09 22.32 0.23 -0.43 16 23 C -0.14 -3.34 9.73 22.30 0.22 -3.12 16 24 C 0.15 4.50 6.76 39.50 0.27 4.77 16 25 C -0.11 -3.29 6.04 30.98 0.19 -3.11 16 26 C -0.10 -2.66 6.94 32.70 0.23 -2.44 16 27 C -0.11 -3.47 6.46 30.94 0.20 -3.27 16 28 C 0.15 5.83 2.64 46.48 0.12 5.95 16 29 H 0.02 0.76 7.94 -2.39 -0.02 0.74 16 30 H 0.24 14.54 8.31 -92.71 -0.77 13.76 16 31 H 0.00 0.01 7.98 -2.39 -0.02 -0.01 16 32 H 0.03 1.59 7.04 -2.39 -0.02 1.57 16 33 H 0.08 3.06 8.14 -2.38 -0.02 3.05 16 34 H 0.06 2.52 7.18 -2.38 -0.02 2.51 16 35 H 0.40 15.13 6.73 -92.71 -0.62 14.51 16 36 H 0.21 5.96 7.46 -2.91 -0.02 5.94 16 37 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.21 -0.11 8.06 -2.92 -0.02 -0.13 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.15 3.89 7.12 -2.91 -0.02 3.87 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.09 6.86 -2.39 -0.02 2.08 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 45 H 0.06 2.03 7.38 -2.39 -0.02 2.02 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -76.64 368.16 3.26 -73.38 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.39 Total: 27.95 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.06 Total: 11.87 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -5.15 Total: -136.18 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.64 3.26 -73.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992329266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.434 kcal (2) G-P(sol) polarization free energy of solvation -76.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds