Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48505 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47219 * 300.00041 * 3 2 1 6 6 H 1.48504 * 109.47181 * 60.00243 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.47372 * 125.57985 * 359.97438 * 9 7 2 11 11 C 1.54863 * 104.82403 * 155.33403 * 10 9 7 12 12 C 1.54914 * 101.76862 * 37.07020 * 11 10 9 13 13 N 1.46495 * 112.33186 * 86.21405 * 12 11 10 14 14 C 1.34780 * 119.99959 * 64.36249 * 13 12 11 15 15 O 1.21590 * 119.99661 * 359.97438 * 14 13 12 16 16 C 1.47588 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.36574 * 125.91540 * 179.71347 * 16 14 13 18 18 N 1.36203 * 107.09394 * 179.84492 * 17 16 14 19 19 C 1.36679 * 132.29323 * 180.11572 * 18 17 16 20 20 C 1.34848 * 120.63536 * 180.31133 * 19 18 17 21 21 C 1.40568 * 120.34289 * 0.02562 * 20 19 18 22 22 C 1.35894 * 119.73559 * 0.03349 * 21 20 19 23 23 C 1.37269 * 107.33745 * 0.41692 * 18 17 16 24 24 N 1.32236 * 108.37774 * 359.73779 * 23 18 17 25 25 C 1.53587 * 109.08998 * 211.89019 * 12 11 10 26 26 C 1.54659 * 106.72449 * 113.07167 * 25 12 11 27 27 C 1.54761 * 103.94775 * 335.09031 * 26 25 12 28 28 C 1.46980 * 125.58376 * 180.02562 * 9 7 2 29 29 H 1.08999 * 111.81349 * 58.07640 * 28 9 7 30 30 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36918 * 274.16694 * 10 9 7 32 32 H 1.08998 * 110.37202 * 36.49129 * 10 9 7 33 33 H 1.08999 * 110.97194 * 155.19015 * 11 10 9 34 34 H 1.09006 * 110.96628 * 278.91501 * 11 10 9 35 35 H 0.97000 * 120.00325 * 244.35312 * 13 12 11 36 36 H 1.07998 * 126.45820 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.68512 * 0.33642 * 19 18 17 38 38 H 1.08000 * 119.82792 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.13646 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.32900 * 179.97438 * 22 21 20 41 41 H 1.09001 * 110.01521 * 232.38489 * 25 12 11 42 42 H 1.08997 * 110.01679 * 353.72406 * 25 12 11 43 43 H 1.09000 * 110.67728 * 216.45173 * 26 25 12 44 44 H 1.08997 * 110.51086 * 93.65198 * 26 25 12 45 45 H 1.09002 * 110.67220 * 279.28301 * 27 26 25 46 46 H 1.09001 * 110.66738 * 156.31521 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1411 -2.5313 -0.0017 11 6 -0.4031 -3.9234 -0.6277 12 6 0.7721 -4.7539 -0.0544 13 7 0.4652 -5.3173 1.2626 14 6 -0.5201 -6.2276 1.3932 15 8 -1.1545 -6.5809 0.4179 16 6 -0.8289 -6.7956 2.7199 17 6 -1.8003 -7.7167 2.9906 18 7 -1.7485 -7.9720 4.3275 19 6 -2.4763 -8.8011 5.1345 20 6 -2.2246 -8.8670 6.4576 21 6 -1.2076 -8.0813 7.0270 22 6 -0.4758 -7.2511 6.2384 23 6 -0.7488 -7.1926 4.8544 24 7 -0.2062 -6.4913 3.8734 25 6 1.1758 -5.8259 -1.0775 26 6 2.5934 -5.4567 -1.5732 27 6 2.6839 -3.9293 -1.3405 28 6 1.9332 -3.7264 -0.0017 29 1 2.5872 -3.8743 0.8576 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5259 -2.4953 1.0175 32 1 -0.5986 -1.7501 -0.6087 33 1 -1.3616 -4.3249 -0.2987 34 1 -0.3546 -3.8771 -1.7157 35 1 0.9711 -5.0353 2.0407 36 1 -2.4795 -8.1614 2.2784 37 1 -3.2602 -9.4095 4.7083 38 1 -2.8080 -9.5263 7.0832 39 1 -1.0091 -8.1364 8.0873 40 1 0.3076 -6.6428 6.6658 41 1 1.1904 -6.8074 -0.6035 42 1 0.4762 -5.8261 -1.9134 43 1 2.7032 -5.6884 -2.6326 44 1 3.3507 -5.9775 -0.9872 45 1 2.1882 -3.3874 -2.1459 46 1 3.7237 -3.6149 -1.2500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992485314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 89.029251 kcal Electronic energy + Delta-G solvation = -29618.733044 eV Core-core repulsion = 25703.399959 eV Total energy + Delta-G solvation = -3915.333084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.04183 -40.02089 -38.20568 -37.20025 -34.19465 -34.01283 -33.24054 -31.39736 -30.69253 -29.59788 -29.04536 -26.63862 -26.20807 -24.50409 -23.76091 -22.98722 -22.84632 -20.90776 -19.90634 -19.44389 -18.70061 -18.14285 -17.18159 -16.88728 -16.88169 -16.23777 -15.70615 -15.32750 -14.90075 -14.85665 -14.47452 -14.38522 -14.07633 -13.85130 -13.43797 -13.04115 -12.74972 -12.73981 -12.13529 -12.11667 -12.02656 -11.71048 -11.58252 -11.37317 -11.09882 -10.93070 -10.79353 -10.61007 -10.48375 -10.44296 -10.10269 -10.01474 -9.89507 -9.72724 -9.56341 -9.40016 -9.12341 -8.59520 -8.43795 -8.17004 -6.78080 -5.58177 -3.00969 0.35489 0.95472 2.02737 2.22630 3.13072 3.43046 3.45346 3.49076 3.51306 3.68432 3.86270 4.18960 4.37378 4.52127 4.54331 4.72896 4.93143 5.07558 5.14783 5.24207 5.24566 5.40915 5.47596 5.58578 5.67290 5.73328 5.81236 5.89851 5.93722 6.07980 6.10966 6.17200 6.20779 6.23729 6.36194 6.44768 6.49758 6.61893 6.67413 6.70541 6.85474 6.87536 7.06733 7.20192 7.46933 7.63496 7.71775 7.92978 7.99033 8.43298 8.55517 9.28037 9.89084 10.53758 11.44477 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002987 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.111783 B = 9370.604248 C =10458.666458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.684 5.684 14 C 0.598 3.402 15 O -0.536 6.536 16 C 0.015 3.985 17 C -0.022 4.022 18 N -0.366 5.366 19 C 0.055 3.945 20 C -0.140 4.140 21 C -0.106 4.106 22 C -0.071 4.071 23 C 0.222 3.778 24 N -0.460 5.460 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.129 4.129 28 C 0.161 3.839 29 H 0.048 0.952 30 H 0.250 0.750 31 H 0.009 0.991 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.196 0.804 37 H 0.165 0.835 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -20.463 11.219 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.345 4.345 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.075 3.925 13 N -0.333 5.333 14 C 0.383 3.617 15 O -0.413 6.413 16 C -0.118 4.118 17 C -0.157 4.157 18 N -0.038 5.038 19 C -0.066 4.066 20 C -0.161 4.161 21 C -0.130 4.130 22 C -0.091 4.091 23 C -0.023 4.023 24 N -0.181 5.181 25 C -0.149 4.149 26 C -0.163 4.163 27 C -0.169 4.169 28 C 0.053 3.947 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.213 0.787 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.541 -19.877 10.506 22.760 hybrid contribution -0.074 0.379 0.509 0.639 sum -3.615 -19.498 11.016 22.684 Atomic orbital electron populations 1.69823 1.04850 1.24481 1.57735 1.24779 0.95675 0.97638 1.02633 0.86025 0.78639 0.83837 0.77155 1.20574 1.21854 1.21901 1.19084 0.90467 0.82306 1.42657 0.90463 1.44536 1.01824 0.99201 1.86393 1.21974 0.84374 0.92923 0.97975 1.23336 0.96641 0.98088 1.00013 1.21668 0.96915 0.92410 0.81555 1.45707 1.35235 1.41176 1.11169 1.16826 0.80324 0.79266 0.85315 1.90780 1.50957 1.61528 1.38082 1.20813 0.97368 0.99939 0.93708 1.22616 1.05412 1.04863 0.82787 1.42774 1.24737 1.28315 1.07958 1.21669 0.97881 0.95737 0.91313 1.20838 1.00072 1.01898 0.93263 1.21045 0.95329 0.95859 1.00785 1.20380 1.01103 0.99944 0.87700 1.21002 0.91104 0.94673 0.95557 1.70881 1.26796 1.23267 0.97192 1.22328 0.96675 0.97641 0.98208 1.22438 0.96357 0.97360 1.00111 1.22956 1.00365 0.93942 0.99663 1.21814 0.91630 0.85834 0.95433 0.93438 0.93887 0.97278 0.87444 0.91603 0.91286 0.75573 0.78723 0.81776 0.83109 0.83895 0.82868 0.92297 0.91058 0.92206 0.92357 0.90715 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.07 55.49 0.56 -26.62 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.22 -5.98 10.01 -15.06 -0.15 -6.14 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -15.15 3.03 -161.10 -0.49 -15.63 16 10 C 0.15 3.86 5.90 -2.58 -0.02 3.85 16 11 C -0.14 -3.02 5.75 -24.74 -0.14 -3.17 16 12 C 0.16 3.09 0.74 -129.38 -0.10 2.99 16 13 N -0.68 -12.49 5.24 -46.36 -0.24 -12.74 16 14 C 0.60 10.71 6.99 -12.44 -0.09 10.62 16 15 O -0.54 -10.41 14.75 5.29 0.08 -10.33 16 16 C 0.02 0.24 6.94 -83.45 -0.58 -0.34 16 17 C -0.02 -0.28 11.47 -16.21 -0.19 -0.46 16 18 N -0.37 -4.06 2.93 -62.37 -0.18 -4.25 16 19 C 0.06 0.39 10.93 -16.59 -0.18 0.21 16 20 C -0.14 -0.76 9.98 -39.91 -0.40 -1.16 16 21 C -0.11 -0.66 10.06 -39.54 -0.40 -1.06 16 22 C -0.07 -0.65 10.11 -39.30 -0.40 -1.05 16 23 C 0.22 2.85 7.79 -156.04 -1.22 1.63 16 24 N -0.46 -7.22 11.01 -9.35 -0.10 -7.32 16 25 C -0.11 -1.88 5.24 -25.55 -0.13 -2.01 16 26 C -0.12 -1.95 6.87 -24.93 -0.17 -2.12 16 27 C -0.13 -2.42 6.20 -24.84 -0.15 -2.57 16 28 C 0.16 3.38 3.65 -65.57 -0.24 3.14 16 29 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 3.05 5.83 -51.93 -0.30 2.75 16 33 H 0.07 1.42 6.82 -51.93 -0.35 1.07 16 34 H 0.07 1.45 7.62 -51.93 -0.40 1.05 16 35 H 0.41 7.35 8.22 -40.82 -0.34 7.02 16 36 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.06 1.00 7.43 -51.93 -0.39 0.61 16 42 H 0.07 1.23 7.37 -51.93 -0.38 0.85 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.54 8.09 -51.93 -0.42 1.11 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -33.80 370.42 -10.81 -44.61 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.34 Total: 7.51 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -4.64 Total: 1.92 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -0.46 Total: -66.56 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.80 -10.81 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992485314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.640 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds