Wall clock time and date at job start Sat Apr 11 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48505 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47219 * 300.00041 * 3 2 1 6 6 H 1.48504 * 109.47181 * 60.00243 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00016 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.47372 * 125.57985 * 359.97438 * 9 7 2 11 11 C 1.54863 * 104.82403 * 155.33403 * 10 9 7 12 12 C 1.54914 * 101.76862 * 37.07020 * 11 10 9 13 13 N 1.46495 * 112.33186 * 86.21405 * 12 11 10 14 14 C 1.34780 * 119.99959 * 64.36249 * 13 12 11 15 15 O 1.21590 * 119.99661 * 359.97438 * 14 13 12 16 16 C 1.47588 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.36574 * 125.91540 * 179.71347 * 16 14 13 18 18 N 1.36203 * 107.09394 * 179.84492 * 17 16 14 19 19 C 1.36679 * 132.29323 * 180.11572 * 18 17 16 20 20 C 1.34848 * 120.63536 * 180.31133 * 19 18 17 21 21 C 1.40568 * 120.34289 * 0.02562 * 20 19 18 22 22 C 1.35894 * 119.73559 * 0.03349 * 21 20 19 23 23 C 1.37269 * 107.33745 * 0.41692 * 18 17 16 24 24 N 1.32236 * 108.37774 * 359.73779 * 23 18 17 25 25 C 1.53587 * 109.08998 * 211.89019 * 12 11 10 26 26 C 1.54659 * 106.72449 * 113.07167 * 25 12 11 27 27 C 1.54761 * 103.94775 * 335.09031 * 26 25 12 28 28 C 1.46980 * 125.58376 * 180.02562 * 9 7 2 29 29 H 1.08999 * 111.81349 * 58.07640 * 28 9 7 30 30 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36918 * 274.16694 * 10 9 7 32 32 H 1.08998 * 110.37202 * 36.49129 * 10 9 7 33 33 H 1.08999 * 110.97194 * 155.19015 * 11 10 9 34 34 H 1.09006 * 110.96628 * 278.91501 * 11 10 9 35 35 H 0.97000 * 120.00325 * 244.35312 * 13 12 11 36 36 H 1.07998 * 126.45820 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.68512 * 0.33642 * 19 18 17 38 38 H 1.08000 * 119.82792 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.13646 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.32900 * 179.97438 * 22 21 20 41 41 H 1.09001 * 110.01521 * 232.38489 * 25 12 11 42 42 H 1.08997 * 110.01679 * 353.72406 * 25 12 11 43 43 H 1.09000 * 110.67728 * 216.45173 * 26 25 12 44 44 H 1.08997 * 110.51086 * 93.65198 * 26 25 12 45 45 H 1.09002 * 110.67220 * 279.28301 * 27 26 25 46 46 H 1.09001 * 110.66738 * 156.31521 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1411 -2.5313 -0.0017 11 6 -0.4031 -3.9234 -0.6277 12 6 0.7721 -4.7539 -0.0544 13 7 0.4652 -5.3173 1.2626 14 6 -0.5201 -6.2276 1.3932 15 8 -1.1545 -6.5809 0.4179 16 6 -0.8289 -6.7956 2.7199 17 6 -1.8003 -7.7167 2.9906 18 7 -1.7485 -7.9720 4.3275 19 6 -2.4763 -8.8011 5.1345 20 6 -2.2246 -8.8670 6.4576 21 6 -1.2076 -8.0813 7.0270 22 6 -0.4758 -7.2511 6.2384 23 6 -0.7488 -7.1926 4.8544 24 7 -0.2062 -6.4913 3.8734 25 6 1.1758 -5.8259 -1.0775 26 6 2.5934 -5.4567 -1.5732 27 6 2.6839 -3.9293 -1.3405 28 6 1.9332 -3.7264 -0.0017 29 1 2.5872 -3.8743 0.8576 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5259 -2.4953 1.0175 32 1 -0.5986 -1.7501 -0.6087 33 1 -1.3616 -4.3249 -0.2987 34 1 -0.3546 -3.8771 -1.7157 35 1 0.9711 -5.0353 2.0407 36 1 -2.4795 -8.1614 2.2784 37 1 -3.2602 -9.4095 4.7083 38 1 -2.8080 -9.5263 7.0832 39 1 -1.0091 -8.1364 8.0873 40 1 0.3076 -6.6428 6.6658 41 1 1.1904 -6.8074 -0.6035 42 1 0.4762 -5.8261 -1.9134 43 1 2.7032 -5.6884 -2.6326 44 1 3.3507 -5.9775 -0.9872 45 1 2.1882 -3.3874 -2.1459 46 1 3.7237 -3.6149 -1.2500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992485314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:31 Heat of formation + Delta-G solvation = 68.190852 kcal Electronic energy + Delta-G solvation = -29619.636664 eV Core-core repulsion = 25703.399959 eV Total energy + Delta-G solvation = -3916.236705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.88864 -41.54898 -39.57558 -38.07791 -36.04091 -34.95740 -34.52524 -33.32129 -31.83013 -31.08027 -29.87165 -28.41761 -27.73833 -25.75668 -25.45877 -23.87074 -23.62633 -22.47531 -21.56293 -20.86532 -20.21611 -19.08721 -18.89628 -18.12336 -17.68230 -17.15113 -17.09860 -16.85500 -16.23600 -16.03347 -15.69288 -15.55152 -15.36477 -15.05558 -15.03339 -14.68367 -14.48136 -13.91325 -13.52742 -13.27927 -13.19244 -12.94289 -12.84090 -12.75338 -12.67856 -12.66957 -12.31777 -12.09268 -11.98771 -11.89560 -11.71229 -11.63195 -11.51387 -11.44557 -11.25927 -10.97746 -10.73700 -10.09758 -9.84402 -8.94725 -8.87113 -7.73561 -5.18869 -0.32107 0.20536 1.00652 1.44165 1.47340 1.48349 1.58644 2.15379 2.31870 2.51037 2.58457 3.01134 3.33244 3.35624 3.50163 3.64070 3.75414 3.93662 3.94880 3.95851 4.16103 4.20299 4.28042 4.35307 4.41097 4.46706 4.57917 4.63313 4.65725 4.80349 4.80829 4.87992 4.94816 5.08704 5.11774 5.16694 5.22403 5.24831 5.30789 5.32472 5.46784 5.51517 5.54014 5.64139 5.65520 5.81802 5.96869 6.30265 6.41884 6.67994 7.11604 7.15780 7.79609 8.44525 9.28289 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002987 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.111783 B = 9370.604248 C =10458.666458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.223 4.223 8 H 0.085 0.915 9 N -0.611 5.611 10 C 0.163 3.837 11 C -0.128 4.128 12 C 0.168 3.832 13 N -0.688 5.688 14 C 0.599 3.401 15 O -0.558 6.558 16 C -0.024 4.024 17 C -0.016 4.016 18 N -0.366 5.366 19 C 0.039 3.961 20 C -0.128 4.128 21 C -0.076 4.076 22 C -0.110 4.110 23 C 0.212 3.788 24 N -0.507 5.507 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.122 4.122 28 C 0.152 3.848 29 H 0.050 0.950 30 H 0.244 0.756 31 H -0.026 1.026 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.407 0.593 36 H 0.215 0.785 37 H 0.200 0.800 38 H 0.197 0.803 39 H 0.181 0.819 40 H 0.158 0.842 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -23.393 12.965 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.352 4.352 8 H 0.103 0.897 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.167 4.167 12 C 0.082 3.918 13 N -0.337 5.337 14 C 0.385 3.615 15 O -0.437 6.437 16 C -0.156 4.156 17 C -0.152 4.152 18 N -0.038 5.038 19 C -0.081 4.081 20 C -0.147 4.147 21 C -0.099 4.099 22 C -0.131 4.131 23 C -0.035 4.035 24 N -0.229 5.229 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.162 4.162 28 C 0.045 3.955 29 H 0.067 0.933 30 H 0.054 0.946 31 H -0.008 1.008 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.232 0.768 37 H 0.216 0.784 38 H 0.214 0.786 39 H 0.199 0.801 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.182 -22.853 12.260 26.129 hybrid contribution -0.275 1.161 0.228 1.214 sum -3.457 -21.693 12.488 25.268 Atomic orbital electron populations 1.70080 1.06358 1.24671 1.59167 1.25634 0.96529 1.01017 1.03183 0.84973 0.78225 0.79466 0.76463 1.18798 1.22012 1.22401 1.19461 0.91020 0.83281 1.41472 0.89677 1.44735 1.01871 1.00550 1.86340 1.21622 0.84694 0.94307 0.95574 1.23143 0.97531 0.96085 0.99964 1.21565 0.94889 0.92712 0.82664 1.45703 1.35807 1.41508 1.10668 1.17132 0.79493 0.78614 0.86224 1.90739 1.51518 1.62311 1.39110 1.20561 0.99765 1.02280 0.92986 1.22799 1.04590 1.03872 0.83966 1.42931 1.24726 1.28551 1.07544 1.22526 0.98259 0.95362 0.91928 1.21486 0.99216 1.01102 0.92930 1.21618 0.93216 0.92887 1.02217 1.20648 1.03303 1.02551 0.86552 1.21520 0.91201 0.94318 0.96426 1.70750 1.28738 1.25556 0.97895 1.22270 0.97735 0.96860 0.97320 1.22384 0.95617 0.94656 1.02023 1.22798 1.00008 0.96296 0.97120 1.22065 0.92464 0.84130 0.96855 0.93270 0.94604 1.00774 0.90676 0.92176 0.90807 0.75719 0.76792 0.78359 0.78609 0.80139 0.82452 0.91794 0.91138 0.89712 0.90369 0.92742 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 10.07 21.65 0.22 -58.75 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 7 C -0.22 -12.64 10.01 84.03 0.84 -11.80 16 8 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.61 -32.27 3.03 -663.60 -2.01 -34.28 16 10 C 0.16 8.82 5.90 86.85 0.51 9.34 16 11 C -0.13 -5.72 5.75 31.88 0.18 -5.54 16 12 C 0.17 6.62 0.74 5.19 0.00 6.62 16 13 N -0.69 -26.32 5.24 -418.85 -2.20 -28.51 16 14 C 0.60 22.40 6.99 86.71 0.61 23.01 16 15 O -0.56 -22.27 14.75 -4.00 -0.06 -22.33 16 16 C -0.02 -0.79 6.94 40.80 0.28 -0.51 16 17 C -0.02 -0.41 11.47 83.63 0.96 0.55 16 18 N -0.37 -7.72 2.93 -351.25 -1.03 -8.75 16 19 C 0.04 0.41 10.93 83.16 0.91 1.32 16 20 C -0.13 -0.76 9.98 22.06 0.22 -0.54 16 21 C -0.08 -0.64 10.06 22.29 0.22 -0.42 16 22 C -0.11 -1.90 10.11 22.45 0.23 -1.67 16 23 C 0.21 5.44 7.79 134.20 1.05 6.49 16 24 N -0.51 -16.77 11.01 -183.50 -2.02 -18.79 16 25 C -0.10 -3.44 5.24 31.36 0.16 -3.27 16 26 C -0.11 -3.16 6.87 31.76 0.22 -2.94 16 27 C -0.12 -4.49 6.20 31.82 0.20 -4.29 16 28 C 0.15 6.47 3.65 46.26 0.17 6.63 16 29 H 0.05 2.10 8.02 -2.39 -0.02 2.08 16 30 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 31 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 32 H 0.08 4.57 5.83 -2.39 -0.01 4.55 16 33 H 0.06 2.74 6.82 -2.39 -0.02 2.72 16 34 H 0.07 3.20 7.62 -2.38 -0.02 3.18 16 35 H 0.41 15.62 8.22 -92.71 -0.76 14.86 16 36 H 0.22 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.20 0.63 8.06 -2.91 -0.02 0.60 16 38 H 0.20 -0.53 8.06 -2.91 -0.02 -0.55 16 39 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.06 2.10 7.43 -2.39 -0.02 2.08 16 42 H 0.07 2.37 7.37 -2.39 -0.02 2.36 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.05 2.22 8.09 -2.39 -0.02 2.20 16 46 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -79.39 370.42 2.41 -76.98 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.25 Total: 26.25 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.23 Total: 19.28 kcal Atomic # 7 Polarization: -142.04 SS G_CDS: -7.04 Total: -149.08 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.33 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -79.39 2.41 -76.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992485314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.168 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds