Wall clock time and date at job start Sat Apr 11 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47004 * 240.00018 * 3 2 1 5 5 H 1.48504 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47490 * 119.99926 * 3 2 1 7 7 C 1.38811 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.48704 * 126.78660 * 1.01768 * 9 7 2 11 11 C 1.56239 * 106.37798 * 188.54141 * 10 9 7 12 12 C 1.52133 * 100.80819 * 23.00449 * 11 10 9 13 13 N 1.46505 * 111.48817 * 74.10481 * 12 11 10 14 14 C 1.34771 * 120.00113 * 71.47438 * 13 12 11 15 15 O 1.21596 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.47590 * 120.00370 * 180.02562 * 14 13 12 17 17 C 1.36574 * 125.92026 * 180.02562 * 16 14 13 18 18 N 1.36196 * 107.09239 * 180.02562 * 17 16 14 19 19 C 1.36681 * 132.29446 * 179.97438 * 18 17 16 20 20 C 1.34844 * 120.64009 * 180.02562 * 19 18 17 21 21 C 1.40581 * 120.34245 * 359.97131 * 20 19 18 22 22 C 1.35887 * 119.73002 * 0.02562 * 21 20 19 23 23 C 1.37275 * 107.33997 * 359.97438 * 18 17 16 24 24 N 1.32229 * 108.37684 * 359.73187 * 23 18 17 25 25 C 1.51219 * 122.12176 * 208.79512 * 12 11 10 26 26 C 1.55689 * 104.60435 * 141.27990 * 25 12 11 27 27 C 1.56286 * 105.93748 * 352.74872 * 26 25 12 28 28 C 1.42709 * 127.10401 * 179.97438 * 9 7 2 29 29 H 1.09002 * 108.17861 * 256.54900 * 28 9 7 30 30 H 0.96990 * 120.00244 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.48876 * 69.11728 * 10 9 7 32 32 H 1.09007 * 109.78827 * 307.58570 * 10 9 7 33 33 H 1.08996 * 111.14898 * 265.11714 * 11 10 9 34 34 H 1.09007 * 111.18475 * 140.90526 * 11 10 9 35 35 H 0.97002 * 119.99703 * 251.47571 * 13 12 11 36 36 H 1.07993 * 126.45579 * 359.95919 * 17 16 14 37 37 H 1.07993 * 119.67695 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.83102 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.13338 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.32605 * 180.02562 * 22 21 20 41 41 H 1.09004 * 110.40906 * 22.49844 * 25 12 11 42 42 H 1.09004 * 110.51130 * 260.11194 * 25 12 11 43 43 H 1.09002 * 110.16155 * 233.62991 * 26 25 12 44 44 H 1.08999 * 110.21855 * 111.89417 * 26 25 12 45 45 H 1.08995 * 110.96850 * 217.62109 * 27 26 25 46 46 H 1.08995 * 110.97250 * 93.85647 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1509 -2.5640 -0.0189 11 6 -0.4165 -4.0858 0.2144 12 6 0.8708 -4.4963 0.9135 13 7 0.9061 -4.0172 2.2975 14 6 0.1068 -4.5791 3.2258 15 8 -0.6434 -5.4841 2.9147 16 6 0.1420 -4.0961 4.6200 17 6 -0.6113 -4.5757 5.6533 18 7 -0.2741 -3.8587 6.7610 19 6 -0.7070 -3.9092 8.0565 20 6 -0.2024 -3.0695 8.9830 21 6 0.7794 -2.1279 8.6284 22 6 1.2204 -2.0650 7.3446 23 6 0.6835 -2.9500 6.3844 24 7 0.9263 -3.1108 5.0945 25 6 1.4314 -5.8968 0.8086 26 6 2.9722 -5.6965 0.7096 27 6 3.1969 -4.1557 0.5755 28 6 1.8808 -3.7027 0.0018 29 1 1.7905 -4.1102 -1.0052 30 1 -0.4850 0.8399 -0.0004 31 1 -0.5584 -2.2568 -0.9820 32 1 -0.6034 -1.9786 0.7817 33 1 -0.5358 -4.6137 -0.7317 34 1 -1.2812 -4.2404 0.8599 35 1 1.5049 -3.2955 2.5457 36 1 -1.3383 -5.3727 5.6016 37 1 -1.4606 -4.6287 8.3407 38 1 -0.5543 -3.1205 10.0028 39 1 1.1809 -1.4567 9.3731 40 1 1.9746 -1.3457 7.0617 41 1 1.0541 -6.3912 -0.0866 42 1 1.1797 -6.4764 1.6968 43 1 3.3623 -6.2108 -0.1687 44 1 3.4593 -6.0700 1.6103 45 1 4.0162 -3.9392 -0.1100 46 1 3.3751 -3.7011 1.5499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992485345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:44 Heat of formation + Delta-G solvation = 102.129490 kcal Electronic energy + Delta-G solvation = -30233.505083 eV Core-core repulsion = 26318.740068 eV Total energy + Delta-G solvation = -3914.765015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.88990 -40.32834 -38.18912 -37.05998 -34.38357 -33.87922 -32.84917 -31.64283 -30.55311 -29.65016 -28.90664 -26.86401 -25.89107 -24.53778 -23.93941 -22.89222 -22.70570 -20.51339 -20.26377 -19.48410 -18.63048 -18.02614 -17.04879 -16.80006 -16.40418 -16.08997 -15.63804 -15.33272 -14.82706 -14.66842 -14.50125 -14.25927 -14.03015 -13.85883 -13.63937 -13.35608 -12.61694 -12.52772 -12.26691 -11.98564 -11.87640 -11.79021 -11.32930 -11.27805 -11.22742 -10.94103 -10.84589 -10.72513 -10.44211 -10.28441 -10.24020 -9.95901 -9.88420 -9.64490 -9.60670 -9.11712 -8.97675 -8.58456 -8.33913 -8.02757 -6.79380 -5.66952 -3.01908 0.49195 1.09259 2.19763 2.37031 3.27553 3.43935 3.48193 3.49140 3.65880 3.88091 4.01881 4.32638 4.50105 4.52228 4.67039 4.71396 4.86197 5.18624 5.27326 5.29322 5.31605 5.43431 5.55181 5.60702 5.69253 5.79761 5.82300 5.90688 5.94328 6.03665 6.07262 6.22613 6.24776 6.32649 6.38087 6.41515 6.44926 6.51380 6.58471 6.73849 6.85680 6.90912 6.98973 7.27536 7.58393 7.64876 7.68749 7.86140 8.23166 8.28556 8.77159 9.21155 9.87487 10.55459 11.44671 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.004210 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.871951 B = 6649.044579 C = 8393.222548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.130 3.870 13 N -0.667 5.667 14 C 0.597 3.403 15 O -0.549 6.549 16 C 0.018 3.982 17 C -0.026 4.026 18 N -0.366 5.366 19 C 0.054 3.946 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.068 4.068 23 C 0.221 3.779 24 N -0.453 5.453 25 C -0.112 4.112 26 C -0.116 4.116 27 C -0.115 4.115 28 C 0.159 3.841 29 H 0.024 0.976 30 H 0.252 0.748 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.194 0.806 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -9.689 16.729 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.306 5.306 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.042 3.958 13 N -0.316 5.316 14 C 0.381 3.619 15 O -0.428 6.428 16 C -0.116 4.116 17 C -0.161 4.161 18 N -0.039 5.039 19 C -0.067 4.067 20 C -0.161 4.161 21 C -0.133 4.133 22 C -0.088 4.088 23 C -0.025 4.025 24 N -0.174 5.174 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.154 4.154 28 C 0.049 3.951 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.251 0.749 36 H 0.211 0.789 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.509 -9.650 15.928 18.631 hybrid contribution 0.008 0.900 0.630 1.098 sum 0.517 -8.750 16.558 18.735 Atomic orbital electron populations 1.69911 1.04903 1.25131 1.56581 1.24773 0.95584 0.97586 1.02007 0.86247 0.78496 0.83433 0.77860 1.21259 1.21728 1.21120 1.18964 0.90265 0.82312 1.44312 0.90388 1.43523 1.01779 0.99278 1.86016 1.21925 0.83284 0.88662 1.00684 1.22800 0.96391 0.99629 0.98994 1.21567 0.98818 0.93945 0.81446 1.45524 1.40822 1.37517 1.07763 1.16838 0.80586 0.82057 0.82418 1.90742 1.40643 1.30614 1.80773 1.20859 0.98137 0.97211 0.95348 1.22577 1.06661 1.02774 0.84051 1.42785 1.28090 1.25265 1.07712 1.21635 1.01346 1.02314 0.81437 1.20815 0.98986 0.96576 0.99755 1.21019 0.97258 0.99006 0.96054 1.20396 1.00351 0.97514 0.90570 1.21023 0.93849 0.95444 0.92154 1.70943 1.24024 1.17155 1.05289 1.21879 0.94871 0.96090 1.02222 1.22816 0.95758 0.95974 1.00902 1.21847 0.97788 0.94524 1.01209 1.20848 0.91689 0.87387 0.95196 0.95932 0.93733 0.94855 0.91527 0.91600 0.91406 0.74942 0.78864 0.81909 0.83223 0.83985 0.82874 0.91104 0.91235 0.91983 0.92305 0.91785 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.49 55.49 0.58 -26.55 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.32 10.29 -15.06 -0.15 -6.47 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.58 -14.67 3.08 -163.13 -0.50 -15.17 16 10 C 0.18 4.46 5.33 -1.09 -0.01 4.45 16 11 C -0.14 -2.90 6.21 -25.44 -0.16 -3.06 16 12 C 0.13 2.53 0.40 -130.69 -0.05 2.48 16 13 N -0.67 -13.30 4.39 -47.57 -0.21 -13.50 16 14 C 0.60 11.62 7.15 -12.45 -0.09 11.53 16 15 O -0.55 -11.26 15.03 5.28 0.08 -11.18 16 16 C 0.02 0.32 6.94 -83.45 -0.58 -0.26 16 17 C -0.03 -0.37 11.47 -16.21 -0.19 -0.55 16 18 N -0.37 -4.66 2.93 -62.38 -0.18 -4.84 16 19 C 0.05 0.45 10.93 -16.59 -0.18 0.27 16 20 C -0.14 -0.95 9.98 -39.90 -0.40 -1.35 16 21 C -0.11 -0.86 10.06 -39.54 -0.40 -1.25 16 22 C -0.07 -0.76 10.11 -39.30 -0.40 -1.16 16 23 C 0.22 3.26 7.80 -156.04 -1.22 2.04 16 24 N -0.45 -8.16 11.01 -9.35 -0.10 -8.27 16 25 C -0.11 -1.87 6.03 -26.20 -0.16 -2.03 16 26 C -0.12 -1.75 6.94 -23.53 -0.16 -1.91 16 27 C -0.12 -2.04 6.46 -26.20 -0.17 -2.21 16 28 C 0.16 3.32 2.64 -68.69 -0.18 3.14 16 29 H 0.02 0.50 7.98 -51.93 -0.41 0.08 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 32 H 0.07 1.88 6.97 -51.92 -0.36 1.51 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.45 7.19 -51.92 -0.37 1.08 16 35 H 0.41 8.80 7.47 -40.82 -0.30 8.50 16 36 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.20 6.85 -51.93 -0.36 0.85 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.24 7.35 -51.93 -0.38 0.86 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.66 370.98 -10.73 -44.39 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.38 Total: 8.83 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -4.58 Total: 3.49 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -0.41 Total: -68.33 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.66 -10.73 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992485345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.524 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds