Wall clock time and date at job start Sat Apr 11 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47004 * 240.00018 * 3 2 1 5 5 H 1.48504 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47490 * 119.99926 * 3 2 1 7 7 C 1.38811 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.48704 * 126.78660 * 1.01768 * 9 7 2 11 11 C 1.56239 * 106.37798 * 188.54141 * 10 9 7 12 12 C 1.52133 * 100.80819 * 23.00449 * 11 10 9 13 13 N 1.46505 * 111.48817 * 74.10481 * 12 11 10 14 14 C 1.34771 * 120.00113 * 71.47438 * 13 12 11 15 15 O 1.21596 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.47590 * 120.00370 * 180.02562 * 14 13 12 17 17 C 1.36574 * 125.92026 * 180.02562 * 16 14 13 18 18 N 1.36196 * 107.09239 * 180.02562 * 17 16 14 19 19 C 1.36681 * 132.29446 * 179.97438 * 18 17 16 20 20 C 1.34844 * 120.64009 * 180.02562 * 19 18 17 21 21 C 1.40581 * 120.34245 * 359.97131 * 20 19 18 22 22 C 1.35887 * 119.73002 * 0.02562 * 21 20 19 23 23 C 1.37275 * 107.33997 * 359.97438 * 18 17 16 24 24 N 1.32229 * 108.37684 * 359.73187 * 23 18 17 25 25 C 1.51219 * 122.12176 * 208.79512 * 12 11 10 26 26 C 1.55689 * 104.60435 * 141.27990 * 25 12 11 27 27 C 1.56286 * 105.93748 * 352.74872 * 26 25 12 28 28 C 1.42709 * 127.10401 * 179.97438 * 9 7 2 29 29 H 1.09002 * 108.17861 * 256.54900 * 28 9 7 30 30 H 0.96990 * 120.00244 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.48876 * 69.11728 * 10 9 7 32 32 H 1.09007 * 109.78827 * 307.58570 * 10 9 7 33 33 H 1.08996 * 111.14898 * 265.11714 * 11 10 9 34 34 H 1.09007 * 111.18475 * 140.90526 * 11 10 9 35 35 H 0.97002 * 119.99703 * 251.47571 * 13 12 11 36 36 H 1.07993 * 126.45579 * 359.95919 * 17 16 14 37 37 H 1.07993 * 119.67695 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.83102 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.13338 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.32605 * 180.02562 * 22 21 20 41 41 H 1.09004 * 110.40906 * 22.49844 * 25 12 11 42 42 H 1.09004 * 110.51130 * 260.11194 * 25 12 11 43 43 H 1.09002 * 110.16155 * 233.62991 * 26 25 12 44 44 H 1.08999 * 110.21855 * 111.89417 * 26 25 12 45 45 H 1.08995 * 110.96850 * 217.62109 * 27 26 25 46 46 H 1.08995 * 110.97250 * 93.85647 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1509 -2.5640 -0.0189 11 6 -0.4165 -4.0858 0.2144 12 6 0.8708 -4.4963 0.9135 13 7 0.9061 -4.0172 2.2975 14 6 0.1068 -4.5791 3.2258 15 8 -0.6434 -5.4841 2.9147 16 6 0.1420 -4.0961 4.6200 17 6 -0.6113 -4.5757 5.6533 18 7 -0.2741 -3.8587 6.7610 19 6 -0.7070 -3.9092 8.0565 20 6 -0.2024 -3.0695 8.9830 21 6 0.7794 -2.1279 8.6284 22 6 1.2204 -2.0650 7.3446 23 6 0.6835 -2.9500 6.3844 24 7 0.9263 -3.1108 5.0945 25 6 1.4314 -5.8968 0.8086 26 6 2.9722 -5.6965 0.7096 27 6 3.1969 -4.1557 0.5755 28 6 1.8808 -3.7027 0.0018 29 1 1.7905 -4.1102 -1.0052 30 1 -0.4850 0.8399 -0.0004 31 1 -0.5584 -2.2568 -0.9820 32 1 -0.6034 -1.9786 0.7817 33 1 -0.5358 -4.6137 -0.7317 34 1 -1.2812 -4.2404 0.8599 35 1 1.5049 -3.2955 2.5457 36 1 -1.3383 -5.3727 5.6016 37 1 -1.4606 -4.6287 8.3407 38 1 -0.5543 -3.1205 10.0028 39 1 1.1809 -1.4567 9.3731 40 1 1.9746 -1.3457 7.0617 41 1 1.0541 -6.3912 -0.0866 42 1 1.1797 -6.4764 1.6968 43 1 3.3623 -6.2108 -0.1687 44 1 3.4593 -6.0700 1.6103 45 1 4.0162 -3.9392 -0.1100 46 1 3.3751 -3.7011 1.5499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992485345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:43 Heat of formation + Delta-G solvation = 81.422175 kcal Electronic energy + Delta-G solvation = -30234.403020 eV Core-core repulsion = 26318.740068 eV Total energy + Delta-G solvation = -3915.662952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.87224 -41.91141 -39.58469 -38.05541 -36.19568 -34.84098 -34.31682 -33.55908 -31.83994 -31.08421 -29.86290 -28.55897 -27.45928 -26.01473 -25.53271 -23.87610 -23.61808 -22.23122 -21.61657 -21.18575 -20.12358 -19.10430 -18.37221 -18.07724 -17.71123 -17.30845 -17.12928 -16.42646 -16.25521 -16.11548 -15.80722 -15.70437 -15.44252 -15.17535 -14.98835 -14.91447 -14.17974 -14.08597 -13.52016 -13.26137 -13.05799 -13.00072 -12.86929 -12.76091 -12.67386 -12.59633 -12.21004 -12.13423 -12.09442 -12.06661 -11.81251 -11.58317 -11.43834 -11.35332 -11.16228 -10.77988 -10.67243 -10.06203 -9.79368 -8.94411 -8.86944 -7.82877 -5.19081 -0.31045 0.21217 1.05300 1.45074 1.46726 1.48700 1.54221 2.26552 2.37461 2.50765 2.61203 3.05073 3.09482 3.36375 3.47404 3.74990 3.77319 3.88720 3.95623 4.10294 4.15974 4.19335 4.25759 4.31447 4.40049 4.42556 4.58147 4.61903 4.64351 4.79446 4.81028 4.92809 4.96937 5.06057 5.10372 5.11208 5.22150 5.24602 5.26769 5.33251 5.48649 5.54138 5.55115 5.60157 5.67095 5.77990 5.99416 6.19546 6.50161 6.74955 7.05623 7.24801 7.78151 8.49188 9.28221 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.004210 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.871951 B = 6649.044579 C = 8393.222548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.086 0.914 9 N -0.597 5.597 10 C 0.191 3.809 11 C -0.127 4.127 12 C 0.135 3.865 13 N -0.673 5.673 14 C 0.596 3.404 15 O -0.567 6.567 16 C -0.025 4.025 17 C -0.018 4.018 18 N -0.367 5.367 19 C 0.040 3.960 20 C -0.128 4.128 21 C -0.075 4.075 22 C -0.113 4.113 23 C 0.210 3.790 24 N -0.509 5.509 25 C -0.106 4.106 26 C -0.102 4.102 27 C -0.111 4.111 28 C 0.146 3.854 29 H 0.027 0.973 30 H 0.244 0.756 31 H 0.003 0.997 32 H 0.024 0.976 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.403 0.597 36 H 0.217 0.783 37 H 0.201 0.799 38 H 0.199 0.801 39 H 0.181 0.819 40 H 0.153 0.847 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -10.987 19.752 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.104 0.896 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.166 4.166 12 C 0.048 3.952 13 N -0.321 5.321 14 C 0.382 3.618 15 O -0.447 6.447 16 C -0.157 4.157 17 C -0.154 4.154 18 N -0.038 5.038 19 C -0.080 4.080 20 C -0.148 4.148 21 C -0.099 4.099 22 C -0.133 4.133 23 C -0.036 4.036 24 N -0.231 5.231 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.149 4.149 28 C 0.037 3.963 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.021 0.979 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.239 0.761 36 H 0.234 0.766 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.199 0.801 40 H 0.171 0.829 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.442 -10.992 18.961 21.965 hybrid contribution -0.312 1.345 -0.065 1.383 sum 1.130 -9.646 18.897 21.247 Atomic orbital electron populations 1.70150 1.06420 1.25113 1.58331 1.25592 0.96382 1.00920 1.02661 0.85212 0.77148 0.79122 0.78232 1.20158 1.22467 1.20359 1.19359 0.90847 0.83356 1.42760 0.89614 1.43648 1.01937 1.00489 1.85926 1.21573 0.83455 0.90955 0.97369 1.22657 0.97084 0.96713 1.00145 1.21617 0.97003 0.95561 0.81067 1.45577 1.41033 1.37427 1.08076 1.17130 0.79846 0.81604 0.83261 1.90697 1.41191 1.31375 1.81440 1.20707 1.00692 0.99152 0.95163 1.22782 1.06009 1.02755 0.83830 1.42950 1.27559 1.24380 1.08895 1.22549 1.02137 1.03631 0.79680 1.21488 0.97266 0.94555 1.01465 1.21608 0.95220 0.98050 0.95003 1.20632 1.02432 0.98601 0.91646 1.21514 0.94209 0.96126 0.91789 1.70801 1.26047 1.18684 1.07566 1.21883 0.95982 0.93817 1.02815 1.22753 0.94454 0.93792 1.02959 1.21854 0.96246 0.96427 1.00404 1.21102 0.94175 0.85293 0.95762 0.95617 0.94666 0.97866 0.95752 0.89413 0.92346 0.76086 0.76648 0.78178 0.78409 0.80121 0.82925 0.89331 0.91760 0.89120 0.90950 0.90678 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.38 10.49 21.65 0.23 -59.15 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 7 C -0.23 -13.27 10.29 84.03 0.86 -12.41 16 8 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 9 N -0.60 -31.28 3.08 -670.01 -2.06 -33.34 16 10 C 0.19 10.18 5.33 87.08 0.46 10.64 16 11 C -0.13 -5.50 6.21 31.43 0.20 -5.30 16 12 C 0.14 5.35 0.40 4.33 0.00 5.35 16 13 N -0.67 -28.23 4.39 -422.68 -1.86 -30.09 16 14 C 0.60 24.41 7.15 86.71 0.62 25.03 16 15 O -0.57 -23.99 15.03 -4.02 -0.06 -24.05 16 16 C -0.03 -0.94 6.94 40.80 0.28 -0.65 16 17 C -0.02 -0.51 11.47 83.63 0.96 0.45 16 18 N -0.37 -8.98 2.93 -351.26 -1.03 -10.01 16 19 C 0.04 0.53 10.93 83.16 0.91 1.44 16 20 C -0.13 -1.10 9.98 22.06 0.22 -0.88 16 21 C -0.08 -0.89 10.06 22.30 0.22 -0.66 16 22 C -0.11 -2.44 10.11 22.45 0.23 -2.21 16 23 C 0.21 6.33 7.80 134.20 1.05 7.37 16 24 N -0.51 -19.57 11.01 -183.49 -2.02 -21.59 16 25 C -0.11 -3.41 6.03 30.94 0.19 -3.23 16 26 C -0.10 -2.83 6.94 32.67 0.23 -2.60 16 27 C -0.11 -3.85 6.46 30.94 0.20 -3.65 16 28 C 0.15 6.14 2.64 46.49 0.12 6.27 16 29 H 0.03 1.11 7.98 -2.39 -0.02 1.09 16 30 H 0.24 14.97 8.31 -92.72 -0.77 14.20 16 31 H 0.00 0.18 8.00 -2.39 -0.02 0.16 16 32 H 0.02 1.48 6.97 -2.38 -0.02 1.46 16 33 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.06 2.62 7.19 -2.38 -0.02 2.61 16 35 H 0.40 18.42 7.47 -92.71 -0.69 17.73 16 36 H 0.22 4.90 8.06 -2.91 -0.02 4.87 16 37 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 39 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.06 2.17 6.85 -2.39 -0.02 2.15 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.05 2.01 7.35 -2.39 -0.02 2.00 16 Total: -1.00 -80.60 370.98 2.76 -77.84 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.31 Total: 29.48 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 7.22 Total: 21.78 kcal Atomic # 7 Polarization: -147.44 SS G_CDS: -6.74 Total: -154.18 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -80.60 2.76 -77.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992485345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.266 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds