Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47316 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46840 * 300.00540 * 3 2 1 6 6 H 1.48499 * 109.46710 * 60.00231 * 3 2 1 7 7 C 1.38809 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00603 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99932 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.45875 * 155.00167 * 10 9 7 12 12 C 1.53201 * 109.31144 * 181.38358 * 11 10 9 13 13 N 1.46918 * 108.77665 * 305.36299 * 12 11 10 14 14 C 1.34770 * 120.63431 * 233.58264 * 13 12 11 15 15 O 1.21606 * 119.99985 * 6.39246 * 14 13 12 16 16 C 1.47416 * 120.00617 * 186.38786 * 14 13 12 17 17 C 1.41339 * 126.40458 * 29.20945 * 16 14 13 18 18 N 1.30476 * 108.06507 * 179.79040 * 17 16 14 19 19 N 1.39934 * 108.91359 * 0.38781 * 18 17 16 20 20 C 1.40150 * 125.76885 * 179.87733 * 19 18 17 21 21 C 1.38846 * 120.07003 * 359.68339 * 20 19 18 22 22 C 1.38115 * 119.93563 * 179.97438 * 21 20 19 23 23 C 1.38281 * 120.06533 * 359.97438 * 22 21 20 24 24 C 1.38277 * 120.13731 * 0.02562 * 23 22 21 25 25 C 1.38115 * 120.06692 * 0.02562 * 24 23 22 26 26 C 1.34539 * 108.45854 * 359.60299 * 19 18 17 27 27 C 1.46930 * 118.73832 * 53.86385 * 13 12 11 28 28 C 1.53048 * 109.46328 * 275.06936 * 10 9 7 29 29 H 0.97001 * 120.00322 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99688 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46647 * 35.02611 * 10 9 7 32 32 H 1.08997 * 109.49612 * 61.43831 * 11 10 9 33 33 H 1.08995 * 109.52432 * 301.34938 * 11 10 9 34 34 H 1.08999 * 109.58581 * 185.57567 * 12 11 10 35 35 H 1.08998 * 109.70159 * 65.22496 * 12 11 10 36 36 H 1.08002 * 125.96640 * 0.02562 * 17 16 14 37 37 H 1.08000 * 120.03338 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.96529 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.93074 * 179.74967 * 23 22 21 40 40 H 1.08001 * 119.97059 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.03339 * 180.02562 * 25 24 23 42 42 H 1.07996 * 126.30857 * 180.26682 * 26 19 18 43 43 H 1.09002 * 109.58814 * 65.92172 * 27 13 12 44 44 H 1.09004 * 109.58675 * 186.35050 * 27 13 12 45 45 H 1.09000 * 109.49281 * 298.57134 * 28 10 9 46 46 H 1.08999 * 109.49395 * 58.66196 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1806 -4.7522 0.6093 12 6 1.9623 -6.0694 0.6393 13 7 2.4417 -6.3658 -0.7174 14 6 2.1739 -7.5531 -1.2963 15 8 1.4340 -8.3452 -0.7451 16 6 2.7779 -7.8916 -2.5978 17 6 4.0196 -7.4310 -3.0915 18 7 4.2050 -7.9547 -4.2721 19 7 3.1034 -8.7567 -4.5906 20 6 2.9349 -9.4834 -5.7771 21 6 3.9100 -9.4390 -6.7645 22 6 3.7413 -10.1567 -7.9325 23 6 2.6030 -10.9193 -8.1187 24 6 1.6301 -10.9656 -7.1372 25 6 1.7925 -10.2493 -5.9675 26 6 2.2362 -8.7170 -3.5628 27 6 3.2241 -5.3457 -1.4289 28 6 2.4236 -4.0345 -1.4379 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.9687 -3.5504 0.5893 32 1 0.2817 -4.8763 0.0055 33 1 0.9010 -4.4718 1.6248 34 1 1.3102 -6.8736 0.9802 35 1 2.8123 -5.9770 1.3153 36 1 4.6984 -6.7653 -2.5792 37 1 4.7999 -8.8445 -6.6191 38 1 4.4993 -10.1222 -8.7010 39 1 2.4714 -11.4764 -9.0345 40 1 0.7418 -11.5618 -7.2856 41 1 1.0324 -10.2861 -5.2011 42 1 1.2908 -9.2357 -3.5033 43 1 4.1751 -5.1929 -0.9186 44 1 3.4048 -5.6722 -2.4530 45 1 1.5129 -4.1653 -2.0223 46 1 3.0292 -3.2430 -1.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996786283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = 76.882421 kcal Electronic energy + Delta-G solvation = -28358.530778 eV Core-core repulsion = 24442.670968 eV Total energy + Delta-G solvation = -3915.859810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.90999 -40.94454 -39.85652 -38.60600 -36.16195 -34.84190 -33.75779 -32.45761 -32.12052 -31.35016 -30.93266 -30.01525 -26.78742 -25.32193 -24.84782 -24.02998 -23.79326 -22.51619 -21.83484 -21.38052 -20.35909 -19.35132 -18.97075 -17.82627 -17.18189 -16.89249 -16.71864 -16.63375 -16.39743 -15.94347 -15.62781 -15.42408 -15.36182 -15.00593 -14.95499 -14.68036 -14.52983 -14.30391 -14.00992 -13.84519 -13.60061 -13.26368 -13.02950 -12.86161 -12.64293 -12.59943 -12.44119 -12.19598 -12.09482 -11.99123 -11.94778 -11.70001 -11.42521 -11.27958 -11.02378 -10.80390 -10.33361 -10.05338 -9.65614 -9.18747 -8.97902 -7.91900 -5.20399 -0.34651 0.30380 0.79118 1.11492 1.12318 1.49104 1.49303 1.59296 1.93365 2.26697 2.58057 2.75553 3.23361 3.41776 3.54061 3.71376 3.84065 3.86307 3.88484 3.95478 4.10259 4.12791 4.18811 4.21882 4.38452 4.39803 4.41637 4.47082 4.52361 4.61919 4.66186 4.79611 4.87966 4.89546 4.99228 5.03976 5.08904 5.11910 5.31005 5.34483 5.38344 5.49354 5.52067 5.56716 5.65266 5.66659 6.02140 6.29942 6.33060 6.42462 7.13954 7.35812 8.12281 8.34725 9.32105 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.002204 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.354950 B =12698.748555 C =13579.402537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.128 4.128 12 C 0.125 3.875 13 N -0.600 5.600 14 C 0.596 3.404 15 O -0.586 6.586 16 C -0.293 4.293 17 C 0.092 3.908 18 N -0.310 5.310 19 N -0.312 5.312 20 C 0.120 3.880 21 C -0.131 4.131 22 C -0.099 4.099 23 C -0.122 4.122 24 C -0.094 4.094 25 C -0.145 4.145 26 C 0.122 3.878 27 C 0.105 3.895 28 C -0.140 4.140 29 H 0.248 0.752 30 H 0.369 0.631 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.226 0.774 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.143 0.857 42 H 0.207 0.793 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.038 0.962 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -25.171 -14.705 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.167 4.167 12 C 0.002 3.998 13 N -0.331 5.331 14 C 0.386 3.614 15 O -0.467 6.467 16 C -0.308 4.308 17 C -0.095 4.095 18 N -0.128 5.128 19 N -0.084 5.084 20 C 0.029 3.971 21 C -0.150 4.150 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.112 4.112 25 C -0.165 4.165 26 C -0.026 4.026 27 C -0.017 4.017 28 C -0.181 4.181 29 H 0.057 0.943 30 H 0.200 0.800 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.242 0.758 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.223 0.777 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.057 0.943 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.311 -25.561 -15.465 31.293 hybrid contribution -0.950 1.592 0.942 2.079 sum 8.362 -23.969 -14.523 29.247 Atomic orbital electron populations 1.69835 1.06726 1.25768 1.60137 1.25567 0.96318 1.01146 1.04307 0.85104 0.78492 0.80036 0.76351 1.18582 1.22516 1.22433 1.19693 0.91575 0.84995 1.39979 0.90054 1.42699 1.05392 1.01148 1.88559 1.20447 0.94491 0.84580 0.94037 1.22059 0.98494 0.94665 1.01465 1.21568 0.99311 0.96323 0.82587 1.47962 1.53886 1.14383 1.16841 1.17413 0.79391 0.80995 0.83615 1.90729 1.39371 1.50797 1.65850 1.20225 1.00516 1.11255 0.98762 1.24821 0.95919 0.97153 0.91625 1.77218 1.07161 1.10825 1.17587 1.45789 1.14523 1.35015 1.13026 1.17988 0.98064 0.96391 0.84642 1.21054 0.98819 1.01533 0.93620 1.21419 0.98892 0.95198 0.96255 1.21700 0.93281 0.98655 1.00363 1.21398 1.00351 0.97672 0.91774 1.21182 0.96145 0.98416 1.00797 1.23256 0.96683 0.96352 0.86303 1.22379 0.94563 0.86288 0.98512 1.22526 0.99568 0.96619 0.99343 0.94267 0.79961 0.92667 0.93541 0.90737 0.89621 0.89039 0.75790 0.85247 0.82763 0.82395 0.82157 0.83963 0.77661 0.88297 0.87941 0.94335 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.88 13.06 21.65 0.28 -59.59 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.23 -12.43 9.93 84.03 0.83 -11.59 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -36.48 5.12 -322.81 -1.65 -38.13 16 10 C 0.17 6.41 2.73 45.02 0.12 6.53 16 11 C -0.13 -4.17 5.55 30.68 0.17 -4.00 16 12 C 0.12 3.36 6.44 86.37 0.56 3.92 16 13 N -0.60 -15.94 2.97 -821.95 -2.44 -18.37 16 14 C 0.60 17.20 7.62 86.66 0.66 17.86 16 15 O -0.59 -20.45 16.44 -4.05 -0.07 -20.52 16 16 C -0.29 -7.19 5.54 -20.14 -0.11 -7.30 16 17 C 0.09 1.96 9.58 85.66 0.82 2.78 16 18 N -0.31 -7.33 11.77 -56.22 -0.66 -7.99 16 19 N -0.31 -6.96 3.77 -186.22 -0.70 -7.66 16 20 C 0.12 2.27 6.68 38.10 0.25 2.52 16 21 C -0.13 -2.20 9.65 22.39 0.22 -1.99 16 22 C -0.10 -1.10 10.04 22.25 0.22 -0.87 16 23 C -0.12 -1.03 10.04 22.29 0.22 -0.80 16 24 C -0.09 -0.88 10.04 22.25 0.22 -0.66 16 25 C -0.15 -2.02 9.45 22.39 0.21 -1.81 16 26 C 0.12 2.71 10.72 84.24 0.90 3.61 16 27 C 0.11 2.47 5.23 86.51 0.45 2.92 16 28 C -0.14 -4.55 5.67 30.82 0.17 -4.38 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.37 20.09 7.80 -92.71 -0.72 19.37 16 31 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 2.43 7.00 -2.39 -0.02 2.41 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.23 3.36 6.44 -2.91 -0.02 3.34 16 37 H 0.13 2.34 7.68 -2.91 -0.02 2.32 16 38 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.16 0.41 8.06 -2.91 -0.02 0.38 16 40 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 41 H 0.14 1.57 6.71 -2.91 -0.02 1.55 16 42 H 0.21 3.56 7.01 -2.91 -0.02 3.54 16 43 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 44 H 0.10 2.14 4.16 -2.39 -0.01 2.13 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.65 378.46 3.48 -71.17 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.29 Total: 30.78 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.40 Total: 2.55 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -5.17 Total: -131.75 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.07 Total: -20.52 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.65 3.48 -71.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996786283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.055 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds