Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48495 * 109.47088 * 180.27703 * 3 2 1 5 5 H 1.48497 * 109.46883 * 300.27796 * 3 2 1 6 6 H 1.48499 * 109.47201 * 60.27446 * 3 2 1 7 7 C 1.38806 * 119.99698 * 180.27572 * 2 1 3 8 8 H 1.08003 * 119.99764 * 179.72152 * 7 2 1 9 9 N 1.36939 * 120.00088 * 359.72351 * 7 2 1 10 10 C 1.46508 * 119.99740 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49477 * 34.93845 * 10 9 7 12 12 C 1.53046 * 109.49116 * 154.99969 * 10 9 7 13 13 C 1.53042 * 109.53220 * 181.31541 * 12 10 9 14 14 C 1.53185 * 109.31558 * 298.63688 * 13 12 10 15 15 N 1.46920 * 108.77790 * 54.63772 * 14 13 12 16 16 C 1.34778 * 120.63787 * 126.41352 * 15 14 13 17 17 O 1.21576 * 120.00429 * 173.98134 * 16 15 14 18 18 C 1.47667 * 119.99246 * 353.97835 * 16 15 14 19 19 C 1.41541 * 126.44071 * 173.23701 * 18 16 15 20 20 C 1.35348 * 105.55613 * 179.87860 * 19 18 16 21 21 N 1.35858 * 107.12712 * 0.38159 * 20 19 18 22 22 C 1.40116 * 124.95847 * 179.76624 * 21 20 19 23 23 C 1.38857 * 120.06985 * 359.72556 * 22 21 20 24 24 C 1.38110 * 119.92691 * 179.77057 * 23 22 21 25 25 C 1.38281 * 120.07338 * 0.52775 * 24 23 22 26 26 C 1.38288 * 120.13654 * 359.70082 * 25 24 23 27 27 C 1.38118 * 120.06655 * 0.05004 * 26 25 24 28 28 N 1.28478 * 110.07879 * 359.74938 * 21 20 19 29 29 C 1.46929 * 118.73784 * 306.39171 * 15 14 13 30 30 H 0.97005 * 119.99774 * 359.72346 * 1 2 3 31 31 H 0.96997 * 120.00386 * 359.97438 * 9 7 2 32 32 H 1.08988 * 109.46197 * 301.33469 * 12 10 9 33 33 H 1.09000 * 109.46118 * 61.31511 * 12 10 9 34 34 H 1.08998 * 109.49659 * 58.59126 * 13 12 10 35 35 H 1.08998 * 109.49423 * 178.68032 * 13 12 10 36 36 H 1.09001 * 109.58977 * 174.42238 * 14 13 12 37 37 H 1.09007 * 109.58839 * 294.84826 * 14 13 12 38 38 H 1.07996 * 127.21612 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.43455 * 180.10776 * 20 19 18 40 40 H 1.07992 * 120.03214 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.96844 * 180.25656 * 24 23 22 42 42 H 1.08007 * 119.93556 * 179.72650 * 25 24 23 43 43 H 1.07998 * 119.96576 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.03215 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.58555 * 293.82073 * 29 15 14 46 46 H 1.09003 * 109.58970 * 173.39771 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0068 5 1 1.8864 2.3993 -1.2091 6 1 1.8966 2.3935 1.2158 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3254 -2.3880 -0.0058 10 6 2.0580 -3.6568 -0.0124 11 1 2.9720 -3.5522 0.5721 12 6 1.1837 -4.7544 0.5984 13 6 1.9601 -6.0731 0.6219 14 6 2.3135 -6.4787 -0.8123 15 7 3.0297 -5.3683 -1.4549 16 6 4.2298 -5.5690 -2.0346 17 8 4.7621 -4.6706 -2.6572 18 6 4.8981 -6.8802 -1.9134 19 6 6.0847 -7.2831 -2.5714 20 6 6.3169 -8.5506 -2.1574 21 7 5.3131 -8.8832 -1.3045 22 6 5.1850 -10.1200 -0.6587 23 6 6.1249 -11.1188 -0.8756 24 6 5.9984 -12.3352 -0.2338 25 6 4.9312 -12.5628 0.6156 26 6 3.9909 -11.5717 0.8301 27 6 4.1147 -10.3514 0.1952 28 7 4.4986 -7.8978 -1.1763 29 6 2.4126 -4.0350 -1.4539 30 1 -0.4850 0.8401 0.0041 31 1 0.3555 -2.3881 -0.0013 32 1 0.9097 -4.4762 1.6159 33 1 0.2812 -4.8753 -0.0007 34 1 2.8753 -5.9462 1.2002 35 1 1.3455 -6.8490 1.0785 36 1 2.9503 -7.3631 -0.7956 37 1 1.4001 -6.6939 -1.3669 38 1 6.6806 -6.7007 -3.2584 39 1 7.1425 -9.1809 -2.4533 40 1 6.9561 -10.9432 -1.5423 41 1 6.7313 -13.1111 -0.3989 42 1 4.8321 -13.5164 1.1129 43 1 3.1588 -11.7523 1.4944 44 1 3.3798 -9.5779 0.3628 45 1 1.5072 -4.0509 -2.0608 46 1 3.1146 -3.3070 -1.8606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999601306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = 107.715725 kcal Electronic energy + Delta-G solvation = -28935.512121 eV Core-core repulsion = 25020.989343 eV Total energy + Delta-G solvation = -3914.522778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.17326 -39.81734 -39.29116 -37.17039 -34.49978 -33.90747 -32.28450 -31.92236 -31.12615 -30.75400 -29.77522 -28.09099 -25.81467 -24.06503 -23.88701 -23.58078 -21.89944 -21.77819 -21.17451 -20.08640 -19.20747 -18.45132 -17.03474 -16.96396 -16.73366 -16.38584 -15.63266 -15.40775 -14.99024 -14.91351 -14.48799 -14.27570 -14.03090 -13.95768 -13.76009 -13.46951 -13.40422 -13.23350 -13.12833 -12.68264 -12.34621 -12.21113 -12.13306 -11.74449 -11.50112 -11.12746 -10.85311 -10.79100 -10.53113 -10.46848 -10.15201 -10.08253 -9.84577 -9.75701 -9.59894 -9.57141 -9.46592 -9.02824 -8.63750 -8.23001 -6.95189 -5.74755 -3.04176 0.30737 0.76844 1.65764 1.99045 2.02222 3.23408 3.27458 3.47541 3.51938 3.53855 3.56568 3.97123 4.23414 4.38313 4.45604 4.60004 4.62784 4.75034 4.79929 4.97260 5.11480 5.21469 5.28663 5.34179 5.41751 5.45007 5.48363 5.54842 5.70002 5.71043 5.75648 5.87363 5.89372 5.95194 6.01488 6.16608 6.19989 6.24880 6.28056 6.31607 6.45476 6.56486 6.67331 6.87742 6.89710 7.10370 7.58358 7.76412 7.78575 8.40589 8.44585 9.55385 10.09755 10.45370 11.47635 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002450 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.028853 B =11427.115737 C =12375.861292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.124 4.124 14 C 0.075 3.925 15 N -0.590 5.590 16 C 0.593 3.407 17 O -0.532 6.532 18 C 0.013 3.987 19 C -0.168 4.168 20 C -0.016 4.016 21 N -0.243 5.243 22 C 0.139 3.861 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.123 4.123 26 C -0.097 4.097 27 C -0.111 4.111 28 N -0.259 5.259 29 C 0.093 3.907 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.060 0.940 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.063 0.937 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 -30.718 -0.335 32.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.163 4.163 14 C -0.049 4.049 15 N -0.322 5.322 16 C 0.378 3.622 17 O -0.407 6.407 18 C -0.148 4.148 19 C -0.195 4.195 20 C -0.155 4.155 21 N -0.023 5.023 22 C 0.048 3.952 23 C -0.150 4.150 24 C -0.115 4.115 25 C -0.141 4.141 26 C -0.115 4.115 27 C -0.130 4.130 28 N -0.091 5.091 29 C -0.031 4.031 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.081 0.919 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.403 -30.420 0.091 32.150 hybrid contribution 0.676 1.190 -0.587 1.489 sum 11.078 -29.230 -0.496 31.263 Atomic orbital electron populations 1.69677 1.05108 1.25588 1.57698 1.24748 0.95528 0.97746 1.02794 0.86113 0.78977 0.84014 0.77130 1.20420 1.21803 1.21893 1.19330 0.91149 0.83975 1.42652 0.90975 1.42394 1.05820 0.99599 1.88036 1.20490 0.94979 0.86435 0.92315 0.93132 1.21842 0.98704 0.94345 1.01619 1.21813 1.00537 0.97767 0.96205 1.22633 0.97952 0.91214 0.93086 1.48103 1.18243 1.11354 1.54484 1.16993 0.80938 0.84633 0.79645 1.90805 1.65243 1.42835 1.41828 1.22337 0.97843 0.94446 1.00186 1.21863 0.98362 0.94902 1.04415 1.22998 0.96465 0.98173 0.97880 1.43025 1.17663 1.09699 1.31922 1.17707 0.97992 0.82567 0.96932 1.20866 0.99003 0.92942 1.02210 1.21009 0.98248 0.96132 0.96154 1.21325 0.94578 0.99679 0.98545 1.21145 0.99269 0.92301 0.98791 1.21043 0.97172 0.98692 0.96132 1.73266 1.17068 0.95937 1.22825 1.22846 0.97911 0.81234 1.01129 0.93558 0.78067 0.91548 0.92124 0.91828 0.91319 0.85432 0.92176 0.81334 0.79837 0.84892 0.84819 0.85218 0.84697 0.84008 0.91875 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 8 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.72 -18.35 5.12 -53.30 -0.27 -18.63 16 10 C 0.17 3.53 2.92 -67.81 -0.20 3.33 16 11 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.13 5.35 -26.69 -0.14 -2.28 16 13 C -0.12 -1.71 6.08 -26.61 -0.16 -1.87 16 14 C 0.07 1.05 6.32 -3.72 -0.02 1.03 16 15 N -0.59 -10.28 2.97 -173.95 -0.52 -10.79 16 16 C 0.59 10.75 7.69 -12.41 -0.10 10.66 16 17 O -0.53 -11.33 16.37 5.30 0.09 -11.24 16 18 C 0.01 0.20 6.87 -82.75 -0.57 -0.37 16 19 C -0.17 -2.02 10.81 -39.35 -0.43 -2.44 16 20 C -0.02 -0.15 10.78 -16.80 -0.18 -0.33 16 21 N -0.24 -2.60 3.52 -10.55 -0.04 -2.64 16 22 C 0.14 1.21 6.66 -83.61 -0.56 0.65 16 23 C -0.13 -0.80 9.43 -39.40 -0.37 -1.17 16 24 C -0.10 -0.46 10.04 -39.61 -0.40 -0.86 16 25 C -0.12 -0.59 10.04 -39.55 -0.40 -0.99 16 26 C -0.10 -0.57 10.04 -39.61 -0.40 -0.97 16 27 C -0.11 -0.90 9.59 -39.40 -0.38 -1.27 16 28 N -0.26 -3.37 7.55 33.42 0.25 -3.12 16 29 C 0.09 1.88 6.00 -3.71 -0.02 1.86 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.39 10.31 7.80 -40.82 -0.32 10.00 16 32 H 0.07 1.14 8.14 -51.94 -0.42 0.72 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.13 1.68 3.75 -110.38 -0.41 1.27 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.18 0.91 6.96 -52.49 -0.37 0.55 16 40 H 0.13 0.54 6.65 -52.49 -0.35 0.19 16 41 H 0.13 0.32 8.06 -52.49 -0.42 -0.11 16 42 H 0.13 0.34 8.06 -52.48 -0.42 -0.08 16 43 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.14 1.20 7.65 -52.49 -0.40 0.79 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.09 2.10 7.04 -51.93 -0.37 1.73 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -34.73 378.67 -10.05 -44.78 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.41 Total: 8.11 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -4.56 Total: -2.47 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.15 Total: -62.93 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.73 -10.05 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999601306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.495 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds