Wall clock time and date at job start Sat Apr 11 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48495 * 109.47088 * 180.27703 * 3 2 1 5 5 H 1.48497 * 109.46883 * 300.27796 * 3 2 1 6 6 H 1.48499 * 109.47201 * 60.27446 * 3 2 1 7 7 C 1.38806 * 119.99698 * 180.27572 * 2 1 3 8 8 H 1.08003 * 119.99764 * 179.72152 * 7 2 1 9 9 N 1.36939 * 120.00088 * 359.72351 * 7 2 1 10 10 C 1.46508 * 119.99740 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49477 * 34.93845 * 10 9 7 12 12 C 1.53046 * 109.49116 * 154.99969 * 10 9 7 13 13 C 1.53042 * 109.53220 * 181.31541 * 12 10 9 14 14 C 1.53185 * 109.31558 * 298.63688 * 13 12 10 15 15 N 1.46920 * 108.77790 * 54.63772 * 14 13 12 16 16 C 1.34778 * 120.63787 * 126.41352 * 15 14 13 17 17 O 1.21576 * 120.00429 * 173.98134 * 16 15 14 18 18 C 1.47667 * 119.99246 * 353.97835 * 16 15 14 19 19 C 1.41541 * 126.44071 * 173.23701 * 18 16 15 20 20 C 1.35348 * 105.55613 * 179.87860 * 19 18 16 21 21 N 1.35858 * 107.12712 * 0.38159 * 20 19 18 22 22 C 1.40116 * 124.95847 * 179.76624 * 21 20 19 23 23 C 1.38857 * 120.06985 * 359.72556 * 22 21 20 24 24 C 1.38110 * 119.92691 * 179.77057 * 23 22 21 25 25 C 1.38281 * 120.07338 * 0.52775 * 24 23 22 26 26 C 1.38288 * 120.13654 * 359.70082 * 25 24 23 27 27 C 1.38118 * 120.06655 * 0.05004 * 26 25 24 28 28 N 1.28478 * 110.07879 * 359.74938 * 21 20 19 29 29 C 1.46929 * 118.73784 * 306.39171 * 15 14 13 30 30 H 0.97005 * 119.99774 * 359.72346 * 1 2 3 31 31 H 0.96997 * 120.00386 * 359.97438 * 9 7 2 32 32 H 1.08988 * 109.46197 * 301.33469 * 12 10 9 33 33 H 1.09000 * 109.46118 * 61.31511 * 12 10 9 34 34 H 1.08998 * 109.49659 * 58.59126 * 13 12 10 35 35 H 1.08998 * 109.49423 * 178.68032 * 13 12 10 36 36 H 1.09001 * 109.58977 * 174.42238 * 14 13 12 37 37 H 1.09007 * 109.58839 * 294.84826 * 14 13 12 38 38 H 1.07996 * 127.21612 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.43455 * 180.10776 * 20 19 18 40 40 H 1.07992 * 120.03214 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.96844 * 180.25656 * 24 23 22 42 42 H 1.08007 * 119.93556 * 179.72650 * 25 24 23 43 43 H 1.07998 * 119.96576 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.03215 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.58555 * 293.82073 * 29 15 14 46 46 H 1.09003 * 109.58970 * 173.39771 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0068 5 1 1.8864 2.3993 -1.2091 6 1 1.8966 2.3935 1.2158 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3254 -2.3880 -0.0058 10 6 2.0580 -3.6568 -0.0124 11 1 2.9720 -3.5522 0.5721 12 6 1.1837 -4.7544 0.5984 13 6 1.9601 -6.0731 0.6219 14 6 2.3135 -6.4787 -0.8123 15 7 3.0297 -5.3683 -1.4549 16 6 4.2298 -5.5690 -2.0346 17 8 4.7621 -4.6706 -2.6572 18 6 4.8981 -6.8802 -1.9134 19 6 6.0847 -7.2831 -2.5714 20 6 6.3169 -8.5506 -2.1574 21 7 5.3131 -8.8832 -1.3045 22 6 5.1850 -10.1200 -0.6587 23 6 6.1249 -11.1188 -0.8756 24 6 5.9984 -12.3352 -0.2338 25 6 4.9312 -12.5628 0.6156 26 6 3.9909 -11.5717 0.8301 27 6 4.1147 -10.3514 0.1952 28 7 4.4986 -7.8978 -1.1763 29 6 2.4126 -4.0350 -1.4539 30 1 -0.4850 0.8401 0.0041 31 1 0.3555 -2.3881 -0.0013 32 1 0.9097 -4.4762 1.6159 33 1 0.2812 -4.8753 -0.0007 34 1 2.8753 -5.9462 1.2002 35 1 1.3455 -6.8490 1.0785 36 1 2.9503 -7.3631 -0.7956 37 1 1.4001 -6.6939 -1.3669 38 1 6.6806 -6.7007 -3.2584 39 1 7.1425 -9.1809 -2.4533 40 1 6.9561 -10.9432 -1.5423 41 1 6.7313 -13.1111 -0.3989 42 1 4.8321 -13.5164 1.1129 43 1 3.1588 -11.7523 1.4944 44 1 3.3798 -9.5779 0.3628 45 1 1.5072 -4.0509 -2.0608 46 1 3.1146 -3.3070 -1.8606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999601306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:16 Heat of formation + Delta-G solvation = 86.426300 kcal Electronic energy + Delta-G solvation = -28936.435299 eV Core-core repulsion = 25020.989343 eV Total energy + Delta-G solvation = -3915.445957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.03981 -41.08037 -39.93083 -38.70190 -36.28040 -34.74936 -33.90082 -32.79969 -32.55574 -31.50363 -30.69012 -29.68315 -27.09953 -25.90732 -24.89023 -24.28406 -23.31565 -22.72913 -21.88997 -21.47019 -20.35183 -19.36393 -19.12423 -18.18157 -17.31809 -17.25603 -16.98430 -16.65798 -16.10900 -15.94369 -15.74420 -15.53575 -15.39111 -15.17234 -14.98052 -14.67544 -14.47645 -14.12128 -14.02809 -14.00355 -13.70359 -13.66335 -13.15460 -12.92928 -12.63218 -12.57136 -12.47888 -12.17625 -12.05528 -11.94594 -11.85675 -11.46565 -11.39156 -11.24326 -11.13704 -10.89543 -10.35927 -9.99872 -9.82141 -9.27536 -9.03755 -8.00055 -5.29760 -0.31601 0.35733 0.63624 1.24259 1.26315 1.43296 1.44741 1.55065 1.95750 2.22461 2.52379 2.80104 3.09339 3.32855 3.59407 3.73758 3.76485 3.94717 3.96264 4.01303 4.05707 4.22706 4.24708 4.33218 4.34897 4.43224 4.45627 4.52562 4.60247 4.67249 4.69250 4.72599 4.83512 4.97394 5.00827 5.04534 5.07499 5.20106 5.27026 5.33450 5.40565 5.41097 5.44645 5.53949 5.57391 5.77009 6.05597 6.22413 6.32436 6.73348 7.04119 7.29071 7.99673 8.26559 9.22782 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002450 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.028853 B =11427.115737 C =12375.861292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.245 4.245 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.031 0.969 12 C -0.117 4.117 13 C -0.113 4.113 14 C 0.073 3.927 15 N -0.591 5.591 16 C 0.588 3.412 17 O -0.578 6.578 18 C -0.022 4.022 19 C -0.187 4.187 20 C 0.007 3.993 21 N -0.233 5.233 22 C 0.101 3.899 23 C -0.125 4.125 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.104 4.104 27 C -0.128 4.128 28 N -0.265 5.265 29 C 0.107 3.893 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.233 0.767 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.130 0.870 45 H 0.061 0.939 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.288 -34.882 0.407 36.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.152 4.152 14 C -0.049 4.049 15 N -0.323 5.323 16 C 0.375 3.625 17 O -0.457 6.457 18 C -0.181 4.181 19 C -0.215 4.215 20 C -0.133 4.133 21 N -0.014 5.014 22 C 0.011 3.989 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.147 4.147 28 N -0.099 5.099 29 C -0.018 4.018 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.190 0.810 39 H 0.249 0.751 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.859 -34.648 0.853 36.631 hybrid contribution 0.287 2.191 -0.758 2.336 sum 12.146 -32.457 0.095 34.655 Atomic orbital electron populations 1.69806 1.06328 1.26145 1.59075 1.25512 0.96448 1.00859 1.03307 0.85128 0.78001 0.79985 0.76992 1.19791 1.21753 1.21335 1.19557 0.91065 0.85405 1.41684 0.91671 1.42503 1.05539 1.00502 1.88235 1.20608 0.94691 0.86161 0.92575 0.95059 1.21749 0.98433 0.94327 1.01057 1.21776 1.00408 0.96910 0.96079 1.22899 0.98432 0.90489 0.93128 1.48132 1.18478 1.10880 1.54774 1.17499 0.80692 0.85677 0.78640 1.90756 1.66327 1.44743 1.43840 1.21858 0.99521 0.93686 1.03068 1.22050 0.97890 0.96369 1.05162 1.23614 0.96516 0.97370 0.95820 1.43266 1.17149 1.09710 1.31316 1.18088 0.99808 0.82366 0.98602 1.21217 0.98703 0.92516 1.02084 1.21436 0.98650 0.96211 0.95208 1.21744 0.93737 1.00261 0.97682 1.21403 1.00251 0.91746 0.98798 1.21145 0.97199 0.99488 0.96909 1.73037 1.18019 0.96122 1.22692 1.22332 0.96861 0.82438 1.00167 0.93783 0.78918 0.91679 0.91439 0.92489 0.87363 0.83966 0.90950 0.80973 0.75102 0.82571 0.81819 0.82595 0.83077 0.85207 0.92117 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 13.06 21.65 0.28 -59.94 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 48.53 29.55 68.60 2.03 50.56 16 4 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.25 -14.50 9.93 84.03 0.83 -13.67 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.73 -38.74 5.12 -322.55 -1.65 -40.39 16 10 C 0.17 7.39 2.92 45.07 0.13 7.52 16 11 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 12 C -0.12 -3.94 5.35 30.62 0.16 -3.78 16 13 C -0.11 -2.97 6.08 30.67 0.19 -2.78 16 14 C 0.07 2.02 6.32 86.36 0.55 2.57 16 15 N -0.59 -21.51 2.97 -822.52 -2.44 -23.95 16 16 C 0.59 22.54 7.69 86.73 0.67 23.21 16 17 O -0.58 -26.49 16.37 -3.96 -0.06 -26.55 16 18 C -0.02 -0.68 6.87 42.45 0.29 -0.39 16 19 C -0.19 -4.43 10.81 22.42 0.24 -4.19 16 20 C 0.01 0.11 10.78 83.40 0.90 1.01 16 21 N -0.23 -4.59 3.52 -187.30 -0.66 -5.24 16 22 C 0.10 1.51 6.66 38.11 0.25 1.77 16 23 C -0.13 -1.05 9.43 22.39 0.21 -0.84 16 24 C -0.10 -0.49 10.04 22.25 0.22 -0.26 16 25 C -0.12 -0.65 10.04 22.29 0.22 -0.42 16 26 C -0.10 -0.93 10.04 22.25 0.22 -0.70 16 27 C -0.13 -1.84 9.59 22.39 0.21 -1.62 16 28 N -0.26 -6.75 7.55 -48.16 -0.36 -7.12 16 29 C 0.11 4.61 6.00 86.36 0.52 5.13 16 30 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.38 20.98 7.80 -92.71 -0.72 20.26 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.14 3.68 3.75 -78.00 -0.29 3.38 16 37 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.23 1.23 6.96 -2.91 -0.02 1.20 16 40 H 0.16 0.47 6.65 -2.91 -0.02 0.45 16 41 H 0.16 -0.15 8.06 -2.91 -0.02 -0.17 16 42 H 0.16 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.13 2.08 7.65 -2.91 -0.02 2.05 16 45 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.05 2.68 7.04 -2.39 -0.02 2.67 16 Total: -1.00 -80.25 378.67 3.43 -76.82 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.00 Total: 26.92 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.30 Total: 8.90 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -4.84 Total: -136.64 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -80.25 3.43 -76.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999601306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.244 kcal (2) G-P(sol) polarization free energy of solvation -80.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds