Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00501 * 2 1 4 4 H 1.48494 * 109.47262 * 269.99569 * 3 2 1 5 5 H 1.48499 * 109.47073 * 29.99796 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99572 * 3 2 1 7 7 C 1.38815 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99822 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49988 * 324.93427 * 10 9 7 12 12 C 1.53046 * 109.52223 * 204.85304 * 10 9 7 13 13 C 1.53041 * 109.53828 * 178.66616 * 12 10 9 14 14 C 1.52765 * 109.38141 * 61.24171 * 13 12 10 15 15 N 1.46931 * 109.00780 * 305.58567 * 14 13 12 16 16 C 1.34769 * 120.62929 * 233.58613 * 15 14 13 17 17 O 1.21580 * 119.99814 * 184.44372 * 16 15 14 18 18 C 1.47668 * 120.00174 * 4.43954 * 16 15 14 19 19 C 1.41538 * 126.44329 * 173.62023 * 18 16 15 20 20 C 1.35349 * 105.55540 * 180.26026 * 19 18 16 21 21 N 1.35859 * 107.12769 * 0.02562 * 20 19 18 22 22 C 1.40108 * 124.95790 * 180.02562 * 21 20 19 23 23 C 1.38857 * 120.07003 * 359.72468 * 22 21 20 24 24 C 1.38114 * 119.92911 * 179.72720 * 23 22 21 25 25 C 1.38283 * 120.06913 * 0.54453 * 24 23 22 26 26 C 1.38283 * 120.14018 * 359.73074 * 25 24 23 27 27 C 1.38120 * 120.06115 * 359.97438 * 26 25 24 28 28 N 1.28476 * 110.07814 * 359.97438 * 21 20 19 29 29 C 1.46924 * 118.73538 * 53.31318 * 15 14 13 30 30 H 0.97004 * 119.99248 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00198 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.45677 * 298.69177 * 12 10 9 33 33 H 1.09008 * 109.45690 * 58.64675 * 12 10 9 34 34 H 1.08998 * 109.49384 * 181.31720 * 13 12 10 35 35 H 1.09003 * 109.49502 * 301.38221 * 13 12 10 36 36 H 1.08994 * 109.50680 * 185.70631 * 14 13 12 37 37 H 1.08998 * 109.43317 * 65.42369 * 14 13 12 38 38 H 1.08005 * 127.21727 * 0.23907 * 19 18 16 39 39 H 1.08007 * 126.43273 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.03702 * 359.97022 * 23 22 21 41 41 H 1.08008 * 119.96505 * 180.29781 * 24 23 22 42 42 H 1.08005 * 119.92833 * 179.75067 * 25 24 23 43 43 H 1.07998 * 119.96972 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.02807 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.59014 * 66.42810 * 29 15 14 46 46 H 1.09004 * 109.58298 * 186.85858 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9680 -3.5515 -0.5898 12 6 1.1799 -4.7542 -0.6057 13 6 1.9567 -6.0725 -0.6364 14 6 2.3227 -6.4786 0.7901 15 7 3.0403 -5.3698 1.4341 16 6 4.2447 -5.5707 2.0043 17 8 4.7918 -4.6656 2.6041 18 6 4.8999 -6.8900 1.9008 19 6 6.2076 -7.2155 2.3336 20 6 6.3747 -8.5242 2.0313 21 7 5.2238 -8.9503 1.4486 22 6 4.9917 -10.2531 0.9881 23 6 5.9814 -11.2197 1.1070 24 6 5.7474 -12.5044 0.6572 25 6 4.5332 -12.8256 0.0787 26 6 3.5476 -11.8638 -0.0464 27 6 3.7734 -10.5788 0.4071 28 7 4.3791 -7.9846 1.3824 29 6 2.4224 -4.0368 1.4391 30 1 -0.4849 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 0.2815 -4.8760 -0.0008 33 1 0.8987 -4.4746 -1.6211 34 1 1.3393 -6.8480 -1.0897 35 1 2.8676 -5.9444 -1.2212 36 1 2.9615 -7.3614 0.7646 37 1 1.4133 -6.6990 1.3490 38 1 6.9223 -6.5576 2.8057 39 1 7.2576 -9.1179 2.2175 40 1 6.9317 -10.9683 1.5543 41 1 6.5151 -13.2580 0.7537 42 1 4.3541 -13.8300 -0.2759 43 1 2.6004 -12.1175 -0.4990 44 1 3.0031 -9.8281 0.3095 45 1 1.5213 -4.0540 2.0521 46 1 3.1270 -3.3091 1.8418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999601308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = 108.114003 kcal Electronic energy + Delta-G solvation = -28909.519235 eV Core-core repulsion = 24995.013727 eV Total energy + Delta-G solvation = -3914.505507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.17619 -39.82273 -39.29583 -37.17576 -34.50414 -33.91069 -32.29404 -31.92461 -31.14241 -30.75751 -29.77930 -28.09177 -25.82016 -24.06317 -23.89110 -23.58240 -21.89993 -21.78676 -21.16872 -20.09150 -19.23427 -18.43099 -17.03303 -16.93372 -16.73858 -16.42548 -15.63451 -15.41182 -14.98914 -14.91191 -14.50384 -14.27067 -14.05150 -13.96308 -13.76627 -13.42859 -13.42213 -13.23277 -13.13235 -12.65956 -12.35346 -12.23008 -12.14740 -11.75962 -11.52169 -11.12220 -10.83823 -10.78704 -10.52376 -10.47922 -10.17268 -10.05724 -9.82964 -9.76190 -9.59950 -9.56102 -9.48925 -9.02162 -8.63953 -8.23202 -6.95169 -5.74489 -3.03937 0.30430 0.76358 1.66147 1.99485 2.01305 3.22882 3.26307 3.48215 3.53324 3.53406 3.56258 3.96338 4.23071 4.37842 4.45155 4.59688 4.62887 4.74644 4.79434 4.96815 5.11020 5.21452 5.28829 5.34100 5.41217 5.44776 5.48046 5.54955 5.70098 5.71236 5.75279 5.87446 5.89088 5.94879 6.01470 6.16648 6.19711 6.24822 6.28041 6.31812 6.44971 6.56354 6.67505 6.87817 6.89838 7.10360 7.58517 7.76089 7.78613 8.40930 8.44864 9.55569 10.09948 10.45578 11.47845 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.002420 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.178085 B =11565.424752 C =12545.468048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.073 3.927 15 N -0.589 5.589 16 C 0.592 3.408 17 O -0.532 6.532 18 C 0.014 3.986 19 C -0.168 4.168 20 C -0.015 4.015 21 N -0.243 5.243 22 C 0.139 3.861 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.123 4.123 26 C -0.096 4.096 27 C -0.111 4.111 28 N -0.260 5.260 29 C 0.093 3.907 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.132 0.868 37 H 0.062 0.938 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.063 0.937 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 -30.893 0.828 32.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.165 4.165 14 C -0.051 4.051 15 N -0.321 5.321 16 C 0.377 3.623 17 O -0.408 6.408 18 C -0.147 4.147 19 C -0.195 4.195 20 C -0.155 4.155 21 N -0.023 5.023 22 C 0.048 3.952 23 C -0.150 4.150 24 C -0.115 4.115 25 C -0.141 4.141 26 C -0.115 4.115 27 C -0.131 4.131 28 N -0.092 5.092 29 C -0.032 4.032 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.080 0.920 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.082 0.918 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.976 -30.673 0.636 32.261 hybrid contribution 0.775 1.249 0.388 1.520 sum 10.751 -29.423 1.024 31.343 Atomic orbital electron populations 1.69667 1.05112 1.25698 1.57603 1.24749 0.95527 0.97742 1.02768 0.86183 0.78833 0.83709 0.77496 1.21723 1.21757 1.20574 1.19285 0.91119 0.83981 1.42810 0.91025 1.42380 1.05807 0.99579 1.88073 1.20486 0.94931 0.86443 0.92360 0.93158 1.21841 0.98700 0.94314 1.01635 1.21770 1.00504 0.97870 0.96383 1.22605 0.98168 0.91286 0.93009 1.48111 1.17883 1.11497 1.54591 1.16993 0.80917 0.84751 0.79608 1.90808 1.64479 1.42703 1.42770 1.22341 0.95341 0.93244 1.03764 1.21862 0.97130 0.94850 1.05675 1.23002 0.92671 0.96444 1.03348 1.43035 1.10385 1.07190 1.41720 1.17703 0.96400 0.80719 1.00364 1.20870 0.98578 0.92813 1.02761 1.21013 0.97631 0.95341 0.97545 1.21324 0.93552 0.99978 0.99282 1.21143 0.99777 0.92085 0.98498 1.21035 0.95778 0.97934 0.98323 1.73234 1.18658 0.95964 1.21368 1.22848 0.97906 0.81275 1.01143 0.93510 0.78065 0.92096 0.91561 0.91255 0.91964 0.85202 0.92016 0.81312 0.79829 0.84884 0.84812 0.85219 0.84701 0.84045 0.91847 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.72 -18.36 5.13 -53.30 -0.27 -18.64 16 10 C 0.17 3.53 2.92 -67.81 -0.20 3.33 16 11 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.13 -2.13 5.36 -26.69 -0.14 -2.28 16 13 C -0.13 -1.74 6.06 -26.83 -0.16 -1.90 16 14 C 0.07 1.03 6.29 -3.93 -0.02 1.01 16 15 N -0.59 -10.27 2.98 -174.21 -0.52 -10.79 16 16 C 0.59 10.75 7.70 -12.41 -0.10 10.66 16 17 O -0.53 -11.36 16.36 5.30 0.09 -11.27 16 18 C 0.01 0.21 6.90 -82.75 -0.57 -0.36 16 19 C -0.17 -2.02 10.80 -39.35 -0.43 -2.45 16 20 C -0.02 -0.14 10.78 -16.80 -0.18 -0.32 16 21 N -0.24 -2.60 3.52 -10.55 -0.04 -2.63 16 22 C 0.14 1.21 6.66 -83.62 -0.56 0.65 16 23 C -0.13 -0.80 9.43 -39.40 -0.37 -1.17 16 24 C -0.10 -0.46 10.04 -39.61 -0.40 -0.86 16 25 C -0.12 -0.59 10.04 -39.55 -0.40 -0.99 16 26 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 27 C -0.11 -0.89 9.59 -39.40 -0.38 -1.27 16 28 N -0.26 -3.37 7.48 33.42 0.25 -3.12 16 29 C 0.09 1.87 6.01 -3.71 -0.02 1.85 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 10.32 7.80 -40.82 -0.32 10.00 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.13 1.72 3.70 -119.19 -0.44 1.28 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.18 0.91 6.96 -52.48 -0.37 0.55 16 40 H 0.13 0.54 6.65 -52.49 -0.35 0.19 16 41 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.13 0.33 8.06 -52.48 -0.42 -0.09 16 43 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.14 1.17 7.65 -52.49 -0.40 0.77 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.09 2.11 7.03 -51.93 -0.37 1.74 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -34.72 378.54 -10.09 -44.81 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.43 Total: 8.18 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.57 Total: -2.51 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.15 Total: -62.94 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.72 -10.09 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999601308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.922 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds