Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00501 * 2 1 4 4 H 1.48494 * 109.47262 * 269.99569 * 3 2 1 5 5 H 1.48499 * 109.47073 * 29.99796 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99572 * 3 2 1 7 7 C 1.38815 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99822 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.49988 * 324.93427 * 10 9 7 12 12 C 1.53046 * 109.52223 * 204.85304 * 10 9 7 13 13 C 1.53041 * 109.53828 * 178.66616 * 12 10 9 14 14 C 1.52765 * 109.38141 * 61.24171 * 13 12 10 15 15 N 1.46931 * 109.00780 * 305.58567 * 14 13 12 16 16 C 1.34769 * 120.62929 * 233.58613 * 15 14 13 17 17 O 1.21580 * 119.99814 * 184.44372 * 16 15 14 18 18 C 1.47668 * 120.00174 * 4.43954 * 16 15 14 19 19 C 1.41538 * 126.44329 * 173.62023 * 18 16 15 20 20 C 1.35349 * 105.55540 * 180.26026 * 19 18 16 21 21 N 1.35859 * 107.12769 * 0.02562 * 20 19 18 22 22 C 1.40108 * 124.95790 * 180.02562 * 21 20 19 23 23 C 1.38857 * 120.07003 * 359.72468 * 22 21 20 24 24 C 1.38114 * 119.92911 * 179.72720 * 23 22 21 25 25 C 1.38283 * 120.06913 * 0.54453 * 24 23 22 26 26 C 1.38283 * 120.14018 * 359.73074 * 25 24 23 27 27 C 1.38120 * 120.06115 * 359.97438 * 26 25 24 28 28 N 1.28476 * 110.07814 * 359.97438 * 21 20 19 29 29 C 1.46924 * 118.73538 * 53.31318 * 15 14 13 30 30 H 0.97004 * 119.99248 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00198 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.45677 * 298.69177 * 12 10 9 33 33 H 1.09008 * 109.45690 * 58.64675 * 12 10 9 34 34 H 1.08998 * 109.49384 * 181.31720 * 13 12 10 35 35 H 1.09003 * 109.49502 * 301.38221 * 13 12 10 36 36 H 1.08994 * 109.50680 * 185.70631 * 14 13 12 37 37 H 1.08998 * 109.43317 * 65.42369 * 14 13 12 38 38 H 1.08005 * 127.21727 * 0.23907 * 19 18 16 39 39 H 1.08007 * 126.43273 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.03702 * 359.97022 * 23 22 21 41 41 H 1.08008 * 119.96505 * 180.29781 * 24 23 22 42 42 H 1.08005 * 119.92833 * 179.75067 * 25 24 23 43 43 H 1.07998 * 119.96972 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.02807 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.59014 * 66.42810 * 29 15 14 46 46 H 1.09004 * 109.58298 * 186.85858 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9680 -3.5515 -0.5898 12 6 1.1799 -4.7542 -0.6057 13 6 1.9567 -6.0725 -0.6364 14 6 2.3227 -6.4786 0.7901 15 7 3.0403 -5.3698 1.4341 16 6 4.2447 -5.5707 2.0043 17 8 4.7918 -4.6656 2.6041 18 6 4.8999 -6.8900 1.9008 19 6 6.2076 -7.2155 2.3336 20 6 6.3747 -8.5242 2.0313 21 7 5.2238 -8.9503 1.4486 22 6 4.9917 -10.2531 0.9881 23 6 5.9814 -11.2197 1.1070 24 6 5.7474 -12.5044 0.6572 25 6 4.5332 -12.8256 0.0787 26 6 3.5476 -11.8638 -0.0464 27 6 3.7734 -10.5788 0.4071 28 7 4.3791 -7.9846 1.3824 29 6 2.4224 -4.0368 1.4391 30 1 -0.4849 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 0.2815 -4.8760 -0.0008 33 1 0.8987 -4.4746 -1.6211 34 1 1.3393 -6.8480 -1.0897 35 1 2.8676 -5.9444 -1.2212 36 1 2.9615 -7.3614 0.7646 37 1 1.4133 -6.6990 1.3490 38 1 6.9223 -6.5576 2.8057 39 1 7.2576 -9.1179 2.2175 40 1 6.9317 -10.9683 1.5543 41 1 6.5151 -13.2580 0.7537 42 1 4.3541 -13.8300 -0.2759 43 1 2.6004 -12.1175 -0.4990 44 1 3.0031 -9.8281 0.3095 45 1 1.5213 -4.0540 2.0521 46 1 3.1270 -3.3091 1.8418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999601308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 86.826531 kcal Electronic energy + Delta-G solvation = -28910.442329 eV Core-core repulsion = 24995.013727 eV Total energy + Delta-G solvation = -3915.428601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.04307 -41.08677 -39.93194 -38.70670 -36.28418 -34.75273 -33.90353 -32.81836 -32.56049 -31.50748 -30.69244 -29.68412 -27.10625 -25.90320 -24.89292 -24.28547 -23.31880 -22.72808 -21.89009 -21.47671 -20.37096 -19.35720 -19.11217 -18.15696 -17.34593 -17.28315 -16.98220 -16.64403 -16.10274 -15.94718 -15.74809 -15.54530 -15.38943 -15.17442 -14.97551 -14.68734 -14.47705 -14.07260 -14.04584 -14.01118 -13.72458 -13.67413 -13.16468 -12.90616 -12.65301 -12.56583 -12.47556 -12.22221 -12.05489 -11.94738 -11.85200 -11.45486 -11.39422 -11.23610 -11.12313 -10.86230 -10.37623 -9.99890 -9.82965 -9.27302 -9.03898 -7.99721 -5.29468 -0.31564 0.35686 0.64180 1.23688 1.26107 1.43687 1.45438 1.54607 1.94313 2.23709 2.52690 2.80080 3.08445 3.33030 3.59242 3.73517 3.76302 3.94402 3.95918 4.01733 4.05391 4.22393 4.24667 4.33049 4.35156 4.43127 4.45489 4.52419 4.60158 4.66995 4.69203 4.72898 4.83369 4.97605 5.00596 5.04468 5.06859 5.20294 5.26802 5.33223 5.40363 5.40646 5.44611 5.53893 5.57387 5.77303 6.05611 6.22558 6.32371 6.73501 7.04294 7.29238 7.99896 8.26767 9.22912 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.002420 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.178085 B =11565.424752 C =12545.468048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.032 0.968 12 C -0.117 4.117 13 C -0.115 4.115 14 C 0.071 3.929 15 N -0.590 5.590 16 C 0.587 3.413 17 O -0.579 6.579 18 C -0.021 4.021 19 C -0.188 4.188 20 C 0.007 3.993 21 N -0.233 5.233 22 C 0.101 3.899 23 C -0.125 4.125 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.103 4.103 27 C -0.128 4.128 28 N -0.265 5.265 29 C 0.107 3.893 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.172 0.828 39 H 0.233 0.767 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.130 0.870 45 H 0.061 0.939 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -35.082 0.112 37.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.050 0.950 12 C -0.155 4.155 13 C -0.154 4.154 14 C -0.051 4.051 15 N -0.322 5.322 16 C 0.374 3.626 17 O -0.457 6.457 18 C -0.180 4.180 19 C -0.215 4.215 20 C -0.133 4.133 21 N -0.014 5.014 22 C 0.011 3.989 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.147 4.147 28 N -0.099 5.099 29 C -0.018 4.018 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.190 0.810 39 H 0.249 0.751 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.169 0.831 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.380 -34.926 -0.100 36.733 hybrid contribution 0.387 2.246 0.576 2.350 sum 11.767 -32.680 0.476 34.737 Atomic orbital electron populations 1.69800 1.06335 1.26214 1.58986 1.25518 0.96451 1.00875 1.03271 0.85191 0.77607 0.79667 0.77625 1.20935 1.21631 1.20202 1.19527 0.91075 0.85407 1.41846 0.91654 1.42492 1.05526 1.00491 1.88269 1.20606 0.94680 0.86160 0.92594 0.95028 1.21747 0.98417 0.94304 1.01082 1.21739 1.00402 0.97006 0.96258 1.22874 0.98643 0.90562 0.93048 1.48142 1.18134 1.11009 1.54882 1.17500 0.80642 0.85836 0.78590 1.90759 1.65581 1.44633 1.44761 1.21856 0.96741 0.92331 1.07081 1.22045 0.96318 0.96435 1.06708 1.23614 0.93208 0.95544 1.00891 1.43274 1.10247 1.07469 1.40452 1.18085 0.97868 0.80173 1.02742 1.21220 0.98736 0.92647 1.01936 1.21439 0.98315 0.95360 0.96391 1.21743 0.93085 1.00852 0.97746 1.21403 1.01009 0.91428 0.98338 1.21142 0.95646 0.98817 0.99140 1.72994 1.19496 0.95957 1.21468 1.22334 0.96834 0.82477 1.00200 0.93783 0.78926 0.91421 0.91697 0.87327 0.92573 0.83726 0.90811 0.81009 0.75098 0.82587 0.81829 0.82595 0.83052 0.85198 0.92119 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 13.06 21.65 0.28 -59.93 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 48.49 29.55 68.60 2.03 50.52 16 4 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.25 -14.59 9.93 84.03 0.83 -13.75 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.73 -38.76 5.13 -322.56 -1.65 -40.41 16 10 C 0.17 7.38 2.92 45.07 0.13 7.52 16 11 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 12 C -0.12 -3.94 5.36 30.62 0.16 -3.78 16 13 C -0.12 -3.04 6.06 30.53 0.19 -2.85 16 14 C 0.07 1.97 6.29 86.22 0.54 2.52 16 15 N -0.59 -21.51 2.98 -823.34 -2.45 -23.96 16 16 C 0.59 22.54 7.70 86.74 0.67 23.21 16 17 O -0.58 -26.57 16.36 -3.97 -0.06 -26.63 16 18 C -0.02 -0.64 6.90 42.45 0.29 -0.35 16 19 C -0.19 -4.46 10.80 22.42 0.24 -4.22 16 20 C 0.01 0.12 10.78 83.40 0.90 1.02 16 21 N -0.23 -4.57 3.52 -187.30 -0.66 -5.23 16 22 C 0.10 1.50 6.66 38.11 0.25 1.76 16 23 C -0.13 -1.04 9.43 22.39 0.21 -0.83 16 24 C -0.10 -0.48 10.04 22.25 0.22 -0.26 16 25 C -0.12 -0.63 10.04 22.29 0.22 -0.41 16 26 C -0.10 -0.91 10.04 22.25 0.22 -0.68 16 27 C -0.13 -1.81 9.59 22.39 0.21 -1.60 16 28 N -0.27 -6.73 7.48 -48.17 -0.36 -7.09 16 29 C 0.11 4.60 6.01 86.36 0.52 5.11 16 30 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.38 20.99 7.80 -92.71 -0.72 20.27 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.15 3.74 3.70 -89.40 -0.33 3.41 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.23 1.24 6.96 -2.91 -0.02 1.22 16 40 H 0.16 0.47 6.65 -2.91 -0.02 0.45 16 41 H 0.16 -0.15 8.06 -2.91 -0.02 -0.18 16 42 H 0.16 0.03 8.06 -2.91 -0.02 0.00 16 43 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 44 H 0.13 2.04 7.65 -2.91 -0.02 2.02 16 45 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.05 2.70 7.03 -2.39 -0.02 2.68 16 Total: -1.00 -80.22 378.54 3.38 -76.84 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.03 Total: 27.13 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.30 Total: 8.77 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -4.84 Total: -136.63 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.06 Total: -26.63 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -80.22 3.38 -76.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999601308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.665 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds