Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47067 * 270.00041 * 3 2 1 5 5 H 1.48503 * 109.47038 * 29.99291 * 3 2 1 6 6 H 1.48499 * 109.47255 * 149.99452 * 3 2 1 7 7 C 1.38812 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99604 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99667 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.50318 * 324.94151 * 10 9 7 12 12 C 1.53043 * 109.52305 * 204.85494 * 10 9 7 13 13 C 1.53045 * 109.53696 * 178.66923 * 12 10 9 14 14 C 1.52764 * 109.38033 * 61.24309 * 13 12 10 15 15 N 1.46920 * 109.00838 * 305.58729 * 14 13 12 16 16 C 1.34783 * 120.62659 * 233.58409 * 15 14 13 17 17 O 1.21581 * 119.99282 * 183.51217 * 16 15 14 18 18 C 1.47657 * 120.00269 * 3.50548 * 16 15 14 19 19 C 1.39708 * 120.07638 * 309.38354 * 18 16 15 20 20 C 1.37724 * 119.91528 * 179.97438 * 19 18 16 21 21 C 1.39043 * 120.08119 * 0.02562 * 20 19 18 22 22 N 1.39859 * 119.92032 * 179.97438 * 21 20 19 23 23 C 1.37159 * 126.48834 * 0.02562 * 22 21 20 24 24 C 1.34620 * 106.83372 * 179.97438 * 23 22 21 25 25 N 1.34155 * 108.21384 * 359.97438 * 24 23 22 26 26 C 1.30489 * 109.36710 * 359.75115 * 25 24 23 27 27 C 1.39047 * 120.15806 * 359.97438 * 21 20 19 28 28 C 1.37714 * 120.08055 * 0.02562 * 27 21 20 29 29 C 1.46925 * 118.73895 * 53.31104 * 15 14 13 30 30 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00005 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.46235 * 298.69199 * 12 10 9 33 33 H 1.09002 * 109.45263 * 58.67161 * 12 10 9 34 34 H 1.08998 * 109.49832 * 181.32034 * 13 12 10 35 35 H 1.09001 * 109.49663 * 301.38477 * 13 12 10 36 36 H 1.09006 * 109.50454 * 185.70275 * 14 13 12 37 37 H 1.09006 * 109.42983 * 65.42399 * 14 13 12 38 38 H 1.07997 * 120.04276 * 359.70389 * 19 18 16 39 39 H 1.07996 * 119.95894 * 179.97438 * 20 19 18 40 40 H 1.08003 * 126.58088 * 359.97438 * 23 22 21 41 41 H 1.08003 * 125.89366 * 180.02562 * 24 23 22 42 42 H 1.07995 * 125.72088 * 180.28477 * 26 25 24 43 43 H 1.08002 * 119.95905 * 180.02562 * 27 21 20 44 44 H 1.08005 * 120.04181 * 179.97438 * 28 27 21 45 45 H 1.08995 * 109.58672 * 66.43034 * 29 15 14 46 46 H 1.09007 * 109.58200 * 186.85181 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5659 -3.2064 0.5906 12 6 5.5015 -2.2592 0.6057 13 6 6.2547 -3.5912 0.6363 14 6 6.4228 -4.1114 -0.7901 15 7 5.1038 -4.1783 -1.4336 16 6 4.6751 -5.3220 -2.0037 17 8 3.6096 -5.3474 -2.5886 18 6 5.4997 -6.5439 -1.9181 19 6 6.8505 -6.5032 -2.2724 20 6 7.6167 -7.6448 -2.1907 21 6 7.0472 -8.8368 -1.7569 22 7 7.8282 -9.9941 -1.6757 23 6 9.1593 -10.1034 -1.9881 24 6 9.5079 -11.3846 -1.7664 25 7 8.4244 -12.0445 -1.3300 26 6 7.4135 -11.2219 -1.2659 27 6 5.7031 -8.8809 -1.4035 28 6 4.9309 -7.7433 -1.4826 29 6 4.2583 -2.9767 -1.4386 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 6.0562 -1.5423 0.0005 33 1 5.4004 -1.8761 1.6212 34 1 7.2352 -3.4443 1.0892 35 1 5.6886 -4.3159 1.2214 36 1 6.8680 -5.1061 -0.7647 37 1 7.0683 -3.4340 -1.3494 38 1 7.2923 -5.5789 -2.6140 39 1 8.6608 -7.6142 -2.4648 40 1 9.8040 -9.3132 -2.3438 41 1 10.4905 -11.8081 -1.9135 42 1 6.4142 -11.4748 -0.9437 43 1 5.2642 -9.8084 -1.0665 44 1 3.8869 -7.7784 -1.2083 45 1 4.7236 -2.2051 -2.0518 46 1 3.2756 -3.2231 -1.8410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999823458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = 85.229799 kcal Electronic energy + Delta-G solvation = -28591.130098 eV Core-core repulsion = 24675.632257 eV Total energy + Delta-G solvation = -3915.497841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.76334 -40.65753 -38.96366 -37.42236 -34.90234 -34.38176 -32.47925 -31.87681 -31.41078 -30.34564 -29.81300 -28.64534 -25.82112 -24.19503 -24.00541 -23.51674 -21.91205 -21.54439 -21.03654 -20.53380 -19.46834 -18.97007 -17.62794 -17.48121 -16.28647 -15.96537 -15.79060 -15.46996 -15.16351 -14.85264 -14.58126 -14.51338 -14.36955 -14.14409 -14.02463 -13.82766 -13.68452 -13.30911 -13.25269 -12.90651 -12.73839 -12.62593 -12.47974 -11.75400 -11.63458 -11.34164 -11.03695 -10.98362 -10.79933 -10.72285 -10.54918 -10.34238 -9.97851 -9.88328 -9.63632 -9.57761 -9.18887 -9.16715 -8.72632 -8.49525 -7.35729 -5.81713 -3.19661 0.16037 0.75431 1.71657 2.17139 2.60921 2.69756 2.95857 3.30857 3.32677 3.35078 3.41394 4.05815 4.13259 4.22195 4.25746 4.39363 4.53402 4.65768 4.68604 4.75751 4.92170 4.92990 5.03664 5.09456 5.16207 5.27466 5.36398 5.38815 5.38978 5.40215 5.58061 5.64487 5.72152 5.79877 5.86440 5.92380 5.93982 6.00412 6.09349 6.15886 6.25713 6.30257 6.53751 6.64098 6.75446 6.81122 7.45194 7.52792 7.93179 8.16726 8.36725 9.13549 9.85163 10.03258 11.36104 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002158 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.677596 B =12970.830787 C =13419.194320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.598 5.598 16 C 0.553 3.447 17 O -0.527 6.527 18 C -0.121 4.121 19 C -0.064 4.064 20 C -0.137 4.137 21 C 0.146 3.854 22 N -0.412 5.412 23 C -0.053 4.053 24 C -0.023 4.023 25 N -0.486 5.486 26 C 0.191 3.809 27 C -0.135 4.135 28 C -0.041 4.041 29 C 0.092 3.908 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.210 0.790 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.063 0.937 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.143 -17.809 -2.405 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.331 5.331 16 C 0.339 3.661 17 O -0.404 6.404 18 C -0.124 4.124 19 C -0.083 4.083 20 C -0.157 4.157 21 C 0.053 3.947 22 N -0.090 5.090 23 C -0.183 4.183 24 C -0.168 4.168 25 N -0.202 5.202 26 C -0.090 4.090 27 C -0.155 4.155 28 C -0.061 4.061 29 C -0.032 4.032 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.196 0.804 41 H 0.192 0.808 42 H 0.227 0.773 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.081 0.919 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.251 -18.629 -2.508 28.371 hybrid contribution 0.668 2.167 -0.255 2.282 sum 21.919 -16.461 -2.763 27.551 Atomic orbital electron populations 1.69701 1.05124 1.25914 1.56888 1.24691 0.95235 0.97236 1.01700 0.86559 0.79186 0.84997 0.77799 1.21017 1.21671 1.20315 1.19085 0.80340 0.94864 1.43690 0.89055 1.42716 1.04155 1.01678 1.89826 1.20456 0.90996 0.89578 0.92735 0.92231 1.21873 0.96673 0.96399 1.01890 1.21802 1.00905 0.98173 0.95991 1.21953 0.84516 1.02119 0.94025 1.48189 1.18150 1.11520 1.55227 1.18226 0.85582 0.82824 0.79427 1.90852 1.22697 1.84566 1.42278 1.20120 0.94252 0.94894 1.03182 1.21204 0.92097 0.98304 0.96716 1.20749 1.00887 0.90863 1.03175 1.17953 0.90954 0.85378 1.00416 1.43232 1.09136 1.08586 1.48093 1.22816 0.84586 1.00912 1.09968 1.22399 0.98723 0.90768 1.04943 1.70350 0.99207 1.31993 1.18674 1.25366 1.00943 0.79550 1.03104 1.20770 0.91361 0.99956 1.03417 1.21075 1.00347 0.89976 0.94679 1.22775 0.95655 0.84018 1.00750 0.92954 0.80428 0.92093 0.91252 0.90835 0.91367 0.89523 0.91224 0.84115 0.84579 0.80386 0.80774 0.77320 0.84364 0.83822 0.91898 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.58 27.73 -169.99 -4.71 16.86 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 7 C -0.25 -6.92 10.41 -15.06 -0.16 -7.07 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.74 -16.78 4.93 -53.31 -0.26 -17.05 16 10 C 0.17 3.14 2.92 -67.81 -0.20 2.94 16 11 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 12 C -0.13 -1.78 5.36 -26.69 -0.14 -1.92 16 13 C -0.13 -1.34 6.07 -26.83 -0.16 -1.50 16 14 C 0.10 0.94 5.34 -3.93 -0.02 0.92 16 15 N -0.60 -8.25 2.98 -174.21 -0.52 -8.76 16 16 C 0.55 8.13 7.23 -12.41 -0.09 8.04 16 17 O -0.53 -10.16 16.47 5.29 0.09 -10.07 16 18 C -0.12 -1.29 5.00 -104.95 -0.52 -1.82 16 19 C -0.06 -0.51 7.34 -39.22 -0.29 -0.80 16 20 C -0.14 -0.94 9.45 -39.47 -0.37 -1.31 16 21 C 0.15 1.13 6.64 -83.60 -0.55 0.58 16 22 N -0.41 -3.25 2.98 -62.06 -0.19 -3.44 16 23 C -0.05 -0.37 10.85 -16.45 -0.18 -0.55 16 24 C -0.02 -0.18 11.85 -17.82 -0.21 -0.40 16 25 N -0.49 -4.92 11.24 -14.46 -0.16 -5.09 16 26 C 0.19 1.57 11.91 -89.58 -1.07 0.51 16 27 C -0.14 -1.02 9.45 -39.47 -0.37 -1.40 16 28 C -0.04 -0.39 9.73 -39.22 -0.38 -0.78 16 29 C 0.09 1.60 6.01 -3.71 -0.02 1.58 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.68 4.57 -51.93 -0.24 0.44 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.14 0.90 7.09 -52.49 -0.37 0.53 16 39 H 0.14 0.61 6.79 -52.49 -0.36 0.26 16 40 H 0.18 0.70 7.13 -52.48 -0.37 0.32 16 41 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 42 H 0.21 1.04 7.05 -52.49 -0.37 0.67 16 43 H 0.14 0.71 6.75 -52.49 -0.35 0.36 16 44 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.10 2.04 7.02 -51.93 -0.36 1.67 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -35.76 373.55 -10.25 -46.00 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.05 Total: 6.95 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -4.84 Total: -2.85 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.35 Total: -62.52 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.76 -10.25 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999823458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.232 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds