Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47067 * 270.00041 * 3 2 1 5 5 H 1.48503 * 109.47038 * 29.99291 * 3 2 1 6 6 H 1.48499 * 109.47255 * 149.99452 * 3 2 1 7 7 C 1.38812 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99604 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00222 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99667 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.50318 * 324.94151 * 10 9 7 12 12 C 1.53043 * 109.52305 * 204.85494 * 10 9 7 13 13 C 1.53045 * 109.53696 * 178.66923 * 12 10 9 14 14 C 1.52764 * 109.38033 * 61.24309 * 13 12 10 15 15 N 1.46920 * 109.00838 * 305.58729 * 14 13 12 16 16 C 1.34783 * 120.62659 * 233.58409 * 15 14 13 17 17 O 1.21581 * 119.99282 * 183.51217 * 16 15 14 18 18 C 1.47657 * 120.00269 * 3.50548 * 16 15 14 19 19 C 1.39708 * 120.07638 * 309.38354 * 18 16 15 20 20 C 1.37724 * 119.91528 * 179.97438 * 19 18 16 21 21 C 1.39043 * 120.08119 * 0.02562 * 20 19 18 22 22 N 1.39859 * 119.92032 * 179.97438 * 21 20 19 23 23 C 1.37159 * 126.48834 * 0.02562 * 22 21 20 24 24 C 1.34620 * 106.83372 * 179.97438 * 23 22 21 25 25 N 1.34155 * 108.21384 * 359.97438 * 24 23 22 26 26 C 1.30489 * 109.36710 * 359.75115 * 25 24 23 27 27 C 1.39047 * 120.15806 * 359.97438 * 21 20 19 28 28 C 1.37714 * 120.08055 * 0.02562 * 27 21 20 29 29 C 1.46925 * 118.73895 * 53.31104 * 15 14 13 30 30 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00005 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.46235 * 298.69199 * 12 10 9 33 33 H 1.09002 * 109.45263 * 58.67161 * 12 10 9 34 34 H 1.08998 * 109.49832 * 181.32034 * 13 12 10 35 35 H 1.09001 * 109.49663 * 301.38477 * 13 12 10 36 36 H 1.09006 * 109.50454 * 185.70275 * 14 13 12 37 37 H 1.09006 * 109.42983 * 65.42399 * 14 13 12 38 38 H 1.07997 * 120.04276 * 359.70389 * 19 18 16 39 39 H 1.07996 * 119.95894 * 179.97438 * 20 19 18 40 40 H 1.08003 * 126.58088 * 359.97438 * 23 22 21 41 41 H 1.08003 * 125.89366 * 180.02562 * 24 23 22 42 42 H 1.07995 * 125.72088 * 180.28477 * 26 25 24 43 43 H 1.08002 * 119.95905 * 180.02562 * 27 21 20 44 44 H 1.08005 * 120.04181 * 179.97438 * 28 27 21 45 45 H 1.08995 * 109.58672 * 66.43034 * 29 15 14 46 46 H 1.09007 * 109.58200 * 186.85181 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5659 -3.2064 0.5906 12 6 5.5015 -2.2592 0.6057 13 6 6.2547 -3.5912 0.6363 14 6 6.4228 -4.1114 -0.7901 15 7 5.1038 -4.1783 -1.4336 16 6 4.6751 -5.3220 -2.0037 17 8 3.6096 -5.3474 -2.5886 18 6 5.4997 -6.5439 -1.9181 19 6 6.8505 -6.5032 -2.2724 20 6 7.6167 -7.6448 -2.1907 21 6 7.0472 -8.8368 -1.7569 22 7 7.8282 -9.9941 -1.6757 23 6 9.1593 -10.1034 -1.9881 24 6 9.5079 -11.3846 -1.7664 25 7 8.4244 -12.0445 -1.3300 26 6 7.4135 -11.2219 -1.2659 27 6 5.7031 -8.8809 -1.4035 28 6 4.9309 -7.7433 -1.4826 29 6 4.2583 -2.9767 -1.4386 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 6.0562 -1.5423 0.0005 33 1 5.4004 -1.8761 1.6212 34 1 7.2352 -3.4443 1.0892 35 1 5.6886 -4.3159 1.2214 36 1 6.8680 -5.1061 -0.7647 37 1 7.0683 -3.4340 -1.3494 38 1 7.2923 -5.5789 -2.6140 39 1 8.6608 -7.6142 -2.4648 40 1 9.8040 -9.3132 -2.3438 41 1 10.4905 -11.8081 -1.9135 42 1 6.4142 -11.4748 -0.9437 43 1 5.2642 -9.8084 -1.0665 44 1 3.8869 -7.7784 -1.2083 45 1 4.7236 -2.2051 -2.0518 46 1 3.2756 -3.2231 -1.8410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999823458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 62.685538 kcal Electronic energy + Delta-G solvation = -28592.107691 eV Core-core repulsion = 24675.632257 eV Total energy + Delta-G solvation = -3916.475433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.32005 -41.65150 -39.80753 -38.68752 -36.40128 -35.21890 -33.99902 -32.95802 -32.52391 -31.23167 -30.53425 -29.89392 -26.85818 -25.71857 -24.82668 -24.35102 -23.14577 -22.44693 -21.67398 -21.60090 -20.52016 -19.66430 -19.49484 -18.51016 -17.37824 -16.80918 -16.60190 -16.48189 -16.18974 -16.07200 -15.73686 -15.47185 -15.39606 -14.96038 -14.90643 -14.70825 -14.68036 -14.38029 -14.27251 -14.00144 -13.92640 -13.82434 -13.59770 -13.27280 -12.97206 -12.58812 -12.26955 -12.10736 -11.94978 -11.92865 -11.82760 -11.66861 -11.39568 -11.20346 -11.13532 -10.95865 -10.17949 -9.90153 -9.73380 -9.34706 -9.26448 -8.05423 -5.41880 -0.50244 0.16268 1.09205 1.36033 1.41600 1.48835 1.58259 1.62332 1.93818 2.11444 2.46437 2.59870 3.25103 3.35899 3.48835 3.52321 3.62660 3.75647 3.88573 3.94142 4.03582 4.06971 4.11625 4.13210 4.25411 4.34321 4.45048 4.52175 4.59255 4.60759 4.68123 4.81552 4.83201 4.85886 4.89537 4.94668 5.02543 5.12212 5.21233 5.35042 5.36107 5.42190 5.43644 5.49975 5.73093 5.74291 6.17958 6.20571 6.35652 6.97881 7.02036 7.05075 7.76182 7.98238 9.16186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002158 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.677596 B =12970.830787 C =13419.194320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.242 1.242 7 C -0.238 4.238 8 H 0.044 0.956 9 N -0.743 5.743 10 C 0.169 3.831 11 H 0.029 0.971 12 C -0.121 4.121 13 C -0.123 4.123 14 C 0.092 3.908 15 N -0.595 5.595 16 C 0.548 3.452 17 O -0.590 6.590 18 C -0.139 4.139 19 C -0.055 4.055 20 C -0.124 4.124 21 C 0.147 3.853 22 N -0.415 5.415 23 C -0.047 4.047 24 C -0.045 4.045 25 N -0.523 5.523 26 C 0.181 3.819 27 C -0.131 4.131 28 C -0.055 4.055 29 C 0.104 3.896 30 H 0.259 0.741 31 H 0.371 0.629 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.213 0.787 41 H 0.191 0.809 42 H 0.231 0.769 43 H 0.159 0.841 44 H 0.130 0.870 45 H 0.074 0.926 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.612 -17.544 -2.294 32.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.166 1.166 7 C -0.369 4.369 8 H 0.062 0.938 9 N -0.386 5.386 10 C 0.060 3.940 11 H 0.047 0.953 12 C -0.160 4.160 13 C -0.162 4.162 14 C -0.029 4.029 15 N -0.327 5.327 16 C 0.337 3.663 17 O -0.471 6.471 18 C -0.143 4.143 19 C -0.074 4.074 20 C -0.144 4.144 21 C 0.054 3.946 22 N -0.094 5.094 23 C -0.176 4.176 24 C -0.190 4.190 25 N -0.240 5.240 26 C -0.100 4.100 27 C -0.151 4.151 28 C -0.074 4.074 29 C -0.021 4.021 30 H 0.067 0.933 31 H 0.205 0.795 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.181 0.819 39 H 0.188 0.812 40 H 0.230 0.770 41 H 0.208 0.792 42 H 0.247 0.753 43 H 0.176 0.824 44 H 0.148 0.852 45 H 0.092 0.908 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 26.830 -18.409 -2.375 32.625 hybrid contribution -1.030 1.877 -0.291 2.160 sum 25.800 -16.533 -2.666 30.758 Atomic orbital electron populations 1.69916 1.07462 1.26882 1.59173 1.25640 0.96215 1.01759 1.02131 0.85297 0.78838 0.78724 0.78191 1.20365 1.22301 1.16638 1.18946 0.82759 0.93109 1.42075 0.93773 1.42635 1.02298 1.03753 1.89946 1.20639 0.93251 0.87037 0.93074 0.95297 1.21806 0.93581 0.99116 1.01463 1.21816 1.02234 0.95643 0.96500 1.22357 0.82372 1.04555 0.93616 1.48227 1.19235 1.10071 1.55130 1.18943 0.85150 0.84036 0.78169 1.90815 1.25666 1.85570 1.45061 1.19841 0.95281 0.93029 1.06120 1.21354 0.90479 0.99764 0.95800 1.21058 1.02204 0.89624 1.01493 1.18111 0.90877 0.85789 0.99853 1.43322 1.09569 1.08401 1.48143 1.23365 0.84330 1.01353 1.08574 1.22831 0.99156 0.91546 1.05456 1.70327 1.00422 1.33347 1.19912 1.25848 1.01606 0.79647 1.02911 1.20896 0.91510 0.99890 1.02765 1.21032 1.00180 0.90562 0.95626 1.22241 0.94238 0.85878 0.99759 0.93259 0.79484 0.90149 0.91436 0.86648 0.92474 0.86841 0.88305 0.81940 0.81234 0.77045 0.79172 0.75280 0.82380 0.85199 0.90828 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.40 13.97 21.65 0.30 -64.09 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.96 44.88 27.73 68.60 1.90 46.78 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.24 -9.80 6.52 99.48 0.65 -9.15 16 7 C -0.24 -13.85 10.41 84.03 0.87 -12.97 16 8 H 0.04 2.92 8.06 -2.91 -0.02 2.89 16 9 N -0.74 -34.03 4.93 -322.56 -1.59 -35.62 16 10 C 0.17 6.25 2.92 45.07 0.13 6.38 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.12 -3.00 5.36 30.62 0.16 -2.84 16 13 C -0.12 -2.07 6.07 30.53 0.19 -1.89 16 14 C 0.09 1.43 5.34 86.22 0.46 1.89 16 15 N -0.60 -16.15 2.98 -823.33 -2.45 -18.61 16 16 C 0.55 16.62 7.23 86.73 0.63 17.25 16 17 O -0.59 -24.70 16.47 -3.97 -0.07 -24.76 16 18 C -0.14 -2.84 5.00 -20.08 -0.10 -2.94 16 19 C -0.06 -0.67 7.34 22.50 0.17 -0.50 16 20 C -0.12 -1.12 9.45 22.34 0.21 -0.91 16 21 C 0.15 1.78 6.64 38.25 0.25 2.03 16 22 N -0.42 -5.23 2.98 -350.26 -1.04 -6.28 16 23 C -0.05 -0.49 10.85 83.03 0.90 0.42 16 24 C -0.05 -0.63 11.85 83.51 0.99 0.36 16 25 N -0.52 -9.82 11.24 -199.67 -2.25 -12.07 16 26 C 0.18 2.61 11.91 179.98 2.14 4.76 16 27 C -0.13 -1.74 9.45 22.34 0.21 -1.53 16 28 C -0.05 -1.03 9.73 22.50 0.22 -0.81 16 29 C 0.10 3.74 6.01 86.36 0.52 4.26 16 30 H 0.26 16.03 8.31 -92.71 -0.77 15.25 16 31 H 0.37 15.70 5.66 -92.71 -0.52 15.18 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.24 4.57 -2.38 -0.01 1.23 16 37 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.16 1.27 7.09 -2.91 -0.02 1.24 16 39 H 0.17 0.42 6.79 -2.91 -0.02 0.40 16 40 H 0.21 0.51 7.13 -2.91 -0.02 0.49 16 41 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.23 1.87 7.05 -2.91 -0.02 1.85 16 43 H 0.16 1.35 6.75 -2.91 -0.02 1.33 16 44 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.04 2.05 7.02 -2.38 -0.02 2.03 16 Total: -1.00 -86.65 373.55 3.66 -82.99 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.43 Total: 22.17 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 8.42 Total: 9.48 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -7.03 Total: -136.66 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.07 Total: -24.76 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Total: -86.65 3.66 -82.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999823458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.675 kcal (2) G-P(sol) polarization free energy of solvation -86.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds