Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00239 * 2 1 4 4 H 1.48504 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47099 * 299.99769 * 3 2 1 6 6 H 1.48498 * 109.47061 * 59.99831 * 3 2 1 7 7 C 1.38819 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99751 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00042 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49762 * 324.93441 * 10 9 7 12 12 C 1.53039 * 109.52431 * 204.85460 * 10 9 7 13 13 C 1.53044 * 109.53671 * 178.66747 * 12 10 9 14 14 C 1.52761 * 109.38687 * 61.23838 * 13 12 10 15 15 N 1.46926 * 109.00442 * 305.58751 * 14 13 12 16 16 C 1.34775 * 120.63160 * 233.58115 * 15 14 13 17 17 O 1.21547 * 120.00474 * 183.51374 * 16 15 14 18 18 C 1.47858 * 119.99691 * 3.50913 * 16 15 14 19 19 C 1.39612 * 120.11591 * 309.43195 * 18 16 15 20 20 C 1.37972 * 119.98620 * 180.25647 * 19 18 16 21 21 C 1.38271 * 120.21421 * 359.43980 * 20 19 18 22 22 C 1.38908 * 120.22654 * 0.55863 * 21 20 19 23 23 N 1.40254 * 119.99096 * 179.69675 * 22 21 20 24 24 C 1.37097 * 126.47782 * 359.73901 * 23 22 21 25 25 C 1.34659 * 106.83410 * 179.89525 * 24 23 22 26 26 N 1.34123 * 108.19781 * 0.36851 * 25 24 23 27 27 C 1.30521 * 109.34856 * 359.76431 * 26 25 24 28 28 C 1.38578 * 120.01071 * 359.72425 * 22 21 20 29 29 C 1.46924 * 118.73862 * 53.31346 * 15 14 13 30 30 H 0.97003 * 119.99968 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99941 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46187 * 298.68356 * 12 10 9 33 33 H 1.09003 * 109.46223 * 58.64282 * 12 10 9 34 34 H 1.09005 * 109.49683 * 181.31529 * 13 12 10 35 35 H 1.09001 * 109.49849 * 301.37550 * 13 12 10 36 36 H 1.08995 * 109.50687 * 185.70566 * 14 13 12 37 37 H 1.09002 * 109.43102 * 65.42275 * 14 13 12 38 38 H 1.07997 * 120.01119 * 359.97438 * 19 18 16 39 39 H 1.07997 * 119.89733 * 179.71748 * 20 19 18 40 40 H 1.07999 * 119.89185 * 180.30310 * 21 20 19 41 41 H 1.07995 * 126.58217 * 0.03489 * 24 23 22 42 42 H 1.07999 * 125.90017 * 180.15293 * 25 24 23 43 43 H 1.07995 * 125.71881 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.10304 * 179.97438 * 28 22 21 45 45 H 1.08999 * 109.59214 * 66.42725 * 29 15 14 46 46 H 1.08996 * 109.58774 * 186.85588 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9682 -3.5514 -0.5898 12 6 1.1802 -4.7541 -0.6057 13 6 1.9570 -6.0724 -0.6364 14 6 2.3230 -6.4785 0.7901 15 7 3.0405 -5.3698 1.4340 16 6 4.2450 -5.5705 2.0043 17 8 4.7997 -4.6608 2.5894 18 6 4.8918 -6.8973 1.9184 19 6 4.1819 -8.0467 2.2708 20 6 4.7897 -9.2830 2.1946 21 6 6.0977 -9.3897 1.7589 22 6 6.8122 -8.2520 1.4060 23 7 8.1407 -8.3653 0.9708 24 6 8.8622 -9.5246 0.8485 25 6 10.0835 -9.1784 0.3991 26 7 10.1150 -7.8450 0.2571 27 6 8.9574 -7.3465 0.5963 28 6 6.2128 -7.0050 1.4845 29 6 2.4227 -4.0368 1.4391 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.2816 -4.8761 -0.0008 33 1 0.8989 -4.4746 -1.6211 34 1 1.3396 -6.8480 -1.0896 35 1 2.8678 -5.9445 -1.2212 36 1 2.9618 -7.3613 0.7646 37 1 1.4136 -6.6989 1.3491 38 1 3.1588 -7.9678 2.6072 39 1 4.2408 -10.1708 2.4719 40 1 6.5667 -10.3605 1.6967 41 1 8.5167 -10.5240 1.0681 42 1 10.8980 -9.8567 0.1924 43 1 8.6930 -6.2996 0.5814 44 1 6.7671 -6.1194 1.2109 45 1 1.5215 -4.0540 2.0521 46 1 3.1271 -3.3090 1.8417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000614090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 60.065662 kcal Electronic energy + Delta-G solvation = -28807.880936 eV Core-core repulsion = 24891.291896 eV Total energy + Delta-G solvation = -3916.589040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.34938 -41.66254 -39.79096 -38.65473 -36.32865 -35.24439 -33.93620 -32.80790 -32.52952 -31.07369 -30.21279 -29.76048 -26.97406 -25.93453 -24.68026 -24.61122 -23.28860 -22.50681 -21.80652 -21.42308 -20.51683 -19.40660 -19.12825 -17.93353 -17.31850 -17.14499 -16.84374 -16.60249 -16.47854 -15.93537 -15.71654 -15.47719 -15.38028 -15.19318 -14.88618 -14.81496 -14.62120 -14.35551 -14.16541 -13.98878 -13.80590 -13.67771 -13.16885 -12.96044 -12.92439 -12.60773 -12.50678 -12.20767 -12.10721 -11.92261 -11.79979 -11.61420 -11.37811 -11.17773 -11.16396 -10.98303 -10.19632 -9.81776 -9.75508 -9.34550 -9.05374 -8.01777 -5.30800 -0.33808 -0.07762 1.17687 1.40756 1.43401 1.44087 1.53174 1.67796 1.92065 2.06762 2.50739 2.60517 3.24201 3.31670 3.57513 3.69955 3.72400 3.74765 3.89049 3.97978 3.99576 4.04374 4.10754 4.19333 4.30119 4.35437 4.40820 4.51823 4.58996 4.61204 4.69988 4.72266 4.83296 4.84259 4.87749 5.01096 5.11239 5.15232 5.22396 5.33496 5.35823 5.40321 5.42954 5.51841 5.58208 5.72630 6.15856 6.21279 6.33557 6.94357 6.99218 7.28200 7.99958 8.25332 9.20892 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014261 B = 0.002597 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.889612 B =10779.428664 C =11978.295008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.092 3.908 15 N -0.593 5.593 16 C 0.547 3.453 17 O -0.589 6.589 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.077 4.077 21 C -0.103 4.103 22 C 0.119 3.881 23 N -0.412 5.412 24 C -0.041 4.041 25 C -0.048 4.048 26 N -0.521 5.521 27 C 0.169 3.831 28 C -0.104 4.104 29 C 0.107 3.893 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.159 0.841 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.221 0.779 42 H 0.196 0.804 43 H 0.211 0.789 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -31.185 2.480 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.082 0.918 9 N -0.369 5.369 10 C 0.057 3.943 11 H 0.047 0.953 12 C -0.157 4.157 13 C -0.161 4.161 14 C -0.029 4.029 15 N -0.324 5.324 16 C 0.336 3.664 17 O -0.470 6.470 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.122 4.122 22 C 0.026 3.974 23 N -0.091 5.091 24 C -0.171 4.171 25 C -0.193 4.193 26 N -0.238 5.238 27 C -0.112 4.112 28 C -0.124 4.124 29 C -0.019 4.019 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.176 0.824 39 H 0.203 0.797 40 H 0.186 0.814 41 H 0.237 0.763 42 H 0.213 0.787 43 H 0.228 0.772 44 H 0.137 0.863 45 H 0.083 0.917 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.490 -30.123 2.495 31.681 hybrid contribution -0.396 1.825 0.275 1.888 sum 9.094 -28.297 2.770 29.851 Atomic orbital electron populations 1.69788 1.06236 1.26126 1.59046 1.25464 0.96401 1.00723 1.03366 0.85188 0.78011 0.80274 0.76995 1.19921 1.21410 1.21784 1.19519 0.90970 0.85493 1.41656 0.91839 1.42503 1.05569 1.00549 1.88247 1.20650 0.94652 0.86199 0.92777 0.95349 1.21749 0.98554 0.94360 1.01010 1.21812 1.00693 0.96984 0.96582 1.22361 0.98224 0.88786 0.93483 1.48237 1.18369 1.10958 1.54851 1.18935 0.80865 0.88309 0.78294 1.90793 1.65089 1.46049 1.45050 1.19501 0.94303 0.92917 1.04144 1.21722 1.01056 0.90816 0.97443 1.21449 0.93473 0.98309 0.96231 1.21475 0.95190 0.97402 0.98170 1.17778 0.82730 0.95087 1.01771 1.43348 1.09524 1.08598 1.47617 1.23411 0.93113 0.92237 1.08326 1.22903 0.98615 0.91676 1.06106 1.70319 1.21371 1.11194 1.20964 1.25509 0.86425 0.96262 1.03040 1.20688 0.94252 0.96505 1.00994 1.22284 0.96850 0.82721 0.99999 0.93780 0.78875 0.91024 0.92108 0.86760 0.92433 0.86473 0.88538 0.82385 0.79730 0.81355 0.76281 0.78739 0.77232 0.86283 0.91662 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.65 13.06 21.65 0.28 -58.37 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.24 -13.99 9.93 84.04 0.83 -13.16 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -36.78 5.13 -322.57 -1.65 -38.43 16 10 C 0.17 6.60 2.92 45.07 0.13 6.74 16 11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 12 C -0.12 -3.40 5.36 30.62 0.16 -3.23 16 13 C -0.12 -2.35 6.06 30.53 0.19 -2.16 16 14 C 0.09 1.61 5.34 86.22 0.46 2.07 16 15 N -0.59 -16.94 2.98 -823.15 -2.45 -19.39 16 16 C 0.55 17.05 7.24 86.79 0.63 17.68 16 17 O -0.59 -24.75 16.47 -3.86 -0.06 -24.81 16 18 C -0.10 -2.24 5.00 -20.10 -0.10 -2.34 16 19 C -0.09 -1.08 7.36 22.54 0.17 -0.92 16 20 C -0.08 -0.45 10.02 22.21 0.22 -0.23 16 21 C -0.10 -0.85 9.47 22.44 0.21 -0.64 16 22 C 0.12 1.90 6.63 38.03 0.25 2.16 16 23 N -0.41 -7.31 2.99 -350.50 -1.05 -8.36 16 24 C -0.04 -0.54 10.85 83.05 0.90 0.36 16 25 C -0.05 -0.84 11.85 83.52 0.99 0.15 16 26 N -0.52 -12.78 11.24 -199.71 -2.25 -15.03 16 27 C 0.17 3.74 11.91 180.00 2.14 5.89 16 28 C -0.10 -2.21 9.16 22.65 0.21 -2.00 16 29 C 0.11 4.05 6.01 86.36 0.52 4.57 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.38 19.96 7.80 -92.71 -0.72 19.24 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.39 4.56 -2.39 -0.01 1.38 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.16 1.26 7.07 -2.91 -0.02 1.24 16 39 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.17 0.26 6.80 -2.91 -0.02 0.24 16 41 H 0.22 0.77 7.14 -2.91 -0.02 0.75 16 42 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 43 H 0.21 4.18 7.06 -2.91 -0.02 4.16 16 44 H 0.12 2.89 6.77 -2.91 -0.02 2.87 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 46 H 0.05 2.21 7.02 -2.39 -0.02 2.20 16 Total: -1.00 -83.06 376.76 3.52 -79.54 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.29 Total: 23.72 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 8.38 Total: 11.50 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -7.12 Total: -139.58 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -83.06 3.52 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000614090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.602 kcal (2) G-P(sol) polarization free energy of solvation -83.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds