Wall clock time and date at job start Sat Apr 11 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48509 * 109.47307 * 274.06797 * 3 2 1 5 5 H 1.48503 * 109.47481 * 34.06580 * 3 2 1 6 6 H 1.48496 * 109.47190 * 154.07057 * 3 2 1 7 7 C 1.38809 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99878 * 197.50185 * 7 2 1 9 9 N 1.36936 * 120.00279 * 17.50024 * 7 2 1 10 10 C 1.46931 * 120.62704 * 27.98546 * 9 7 2 11 11 C 1.53190 * 108.77434 * 126.37030 * 10 9 7 12 12 C 1.53034 * 109.34041 * 54.61543 * 11 10 9 13 13 C 1.53040 * 109.54083 * 298.68095 * 12 11 10 14 14 H 1.08999 * 109.49908 * 301.35006 * 13 12 11 15 15 N 1.46498 * 109.50052 * 181.28251 * 13 12 11 16 16 C 1.34770 * 120.00227 * 155.06621 * 15 13 12 17 17 O 1.21606 * 120.00059 * 0.02562 * 16 15 13 18 18 C 1.47416 * 120.00070 * 180.02562 * 16 15 13 19 19 C 1.41328 * 126.41239 * 359.97438 * 18 16 15 20 20 N 1.30472 * 108.07265 * 180.02562 * 19 18 16 21 21 N 1.39942 * 108.91144 * 359.97438 * 20 19 18 22 22 C 1.40155 * 125.76730 * 179.97438 * 21 20 19 23 23 C 1.38840 * 120.06905 * 0.02687 * 22 21 20 24 24 C 1.38127 * 119.93086 * 179.97438 * 23 22 21 25 25 C 1.38281 * 120.06559 * 359.97438 * 24 23 22 26 26 C 1.38279 * 120.13597 * 0.04131 * 25 24 23 27 27 C 1.38118 * 120.06993 * 359.95626 * 26 25 24 28 28 C 1.34535 * 108.45511 * 0.24738 * 21 20 19 29 29 C 1.46921 * 120.63134 * 207.95917 * 9 7 2 30 30 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.58180 * 246.15423 * 10 9 7 32 32 H 1.08993 * 109.58756 * 6.57872 * 10 9 7 33 33 H 1.09001 * 109.49871 * 174.58770 * 11 10 9 34 34 H 1.09000 * 109.49399 * 294.64697 * 11 10 9 35 35 H 1.09003 * 109.48698 * 178.64816 * 12 11 10 36 36 H 1.08998 * 109.43296 * 58.68744 * 12 11 10 37 37 H 0.97006 * 119.99851 * 335.07162 * 15 13 12 38 38 H 1.08002 * 125.96433 * 0.02562 * 19 18 16 39 39 H 1.07994 * 120.03592 * 359.70768 * 23 22 21 40 40 H 1.07993 * 119.96541 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.93117 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.96577 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.03621 * 180.02562 * 27 26 25 44 44 H 1.08010 * 126.30644 * 179.75347 * 28 21 20 45 45 H 1.08998 * 109.58530 * 113.84658 * 29 9 7 46 46 H 1.09000 * 109.70718 * 353.48989 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4117 2.0961 -1.3966 5 1 1.4933 2.6264 0.7842 6 1 3.5881 1.4169 0.6122 7 6 2.0102 -1.2021 -0.0005 8 1 3.0527 -1.2239 0.2807 9 7 1.3730 -2.3605 -0.3577 10 6 0.2347 -2.3330 -1.2863 11 6 0.5144 -3.3036 -2.4380 12 6 0.8276 -4.6890 -1.8684 13 6 2.0770 -4.6102 -0.9882 14 1 2.9156 -4.2414 -1.5789 15 7 2.3938 -5.9426 -0.4681 16 6 3.6577 -6.2431 -0.1095 17 8 4.5352 -5.4082 -0.2173 18 6 3.9764 -7.5841 0.4133 19 6 3.0681 -8.6515 0.5948 20 7 3.7291 -9.6680 1.0765 21 7 5.0729 -9.3064 1.2240 22 6 6.0944 -10.1319 1.7135 23 6 5.8103 -11.4341 2.1021 24 6 6.8193 -12.2453 2.5836 25 6 8.1113 -11.7617 2.6783 26 6 8.3973 -10.4650 2.2922 27 6 7.3927 -9.6491 1.8099 28 6 5.2173 -8.0307 0.8221 29 6 1.8151 -3.6543 0.1800 30 1 -0.4850 0.8400 0.0004 31 1 -0.6712 -2.6384 -0.7628 32 1 0.1091 -1.3246 -1.6806 33 1 -0.3621 -3.3650 -3.0830 34 1 1.3669 -2.9465 -3.0157 35 1 1.0034 -5.3874 -2.6867 36 1 -0.0161 -5.0348 -1.2711 37 1 1.6937 -6.6086 -0.3818 38 1 2.0112 -8.6296 0.3735 39 1 4.8007 -11.8111 2.0321 40 1 6.5989 -13.2582 2.8865 41 1 8.8985 -12.3977 3.0554 42 1 9.4073 -10.0900 2.3677 43 1 7.6167 -8.6366 1.5082 44 1 6.1351 -7.4614 0.8180 45 1 1.0380 -4.0675 0.8230 46 1 2.7315 -3.5198 0.7546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007847973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:28 Heat of formation + Delta-G solvation = 93.709124 kcal Electronic energy + Delta-G solvation = -28151.625135 eV Core-core repulsion = 24236.494985 eV Total energy + Delta-G solvation = -3915.130150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97153 -39.62754 -39.04085 -37.19530 -34.32852 -33.94122 -32.35929 -31.72066 -30.58732 -30.41100 -29.73023 -28.32543 -25.24541 -24.41792 -23.66084 -22.58780 -22.05435 -21.43977 -20.92552 -19.92116 -19.39150 -18.64854 -16.98875 -16.72816 -16.17161 -15.80648 -15.78971 -15.51110 -14.97255 -14.67953 -14.52188 -14.36724 -14.02338 -13.93918 -13.65001 -13.41470 -13.17222 -13.07665 -12.97903 -12.36894 -12.31495 -12.15397 -11.80294 -11.77016 -11.26511 -11.05604 -10.85643 -10.79288 -10.75275 -10.22269 -10.18252 -9.92510 -9.86700 -9.59247 -9.53567 -9.50408 -9.44447 -8.78774 -8.49111 -8.33966 -6.63150 -5.74689 -3.16627 0.33555 0.81806 1.63099 1.88137 1.97737 3.28708 3.42002 3.43071 3.49497 3.52667 3.57209 4.04178 4.29597 4.44086 4.45918 4.56029 4.63253 4.81934 4.85388 4.96128 5.09715 5.21143 5.31593 5.40300 5.46177 5.48153 5.58821 5.66765 5.75087 5.77166 5.83101 5.97006 6.10642 6.13937 6.20653 6.22212 6.28822 6.56878 6.64974 6.69637 6.73032 6.74205 6.88844 7.05482 7.17461 7.39426 7.67701 7.82488 7.87402 8.47646 8.54451 9.26183 9.88606 10.44422 11.34057 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.002081 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.390737 B =13454.390573 C =14426.148787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.087 0.913 15 N -0.717 5.717 16 C 0.590 3.410 17 O -0.542 6.542 18 C -0.272 4.272 19 C 0.091 3.909 20 N -0.292 5.292 21 N -0.315 5.315 22 C 0.155 3.845 23 C -0.116 4.116 24 C -0.097 4.097 25 C -0.128 4.128 26 C -0.092 4.092 27 C -0.138 4.138 28 C 0.124 3.876 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.019 0.981 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.197 0.803 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.192 0.808 45 H 0.017 0.983 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 -25.510 1.866 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.023 3.977 14 H 0.105 0.895 15 N -0.366 5.366 16 C 0.376 3.624 17 O -0.420 6.420 18 C -0.286 4.286 19 C -0.097 4.097 20 N -0.110 5.110 21 N -0.087 5.087 22 C 0.063 3.937 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.147 4.147 26 C -0.111 4.111 27 C -0.159 4.159 28 C -0.023 4.023 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.214 0.786 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.209 0.791 45 H 0.035 0.965 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.155 -25.972 2.221 28.353 hybrid contribution -0.023 1.373 -0.215 1.390 sum 11.132 -24.599 2.007 27.075 Atomic orbital electron populations 1.70045 1.05220 1.25416 1.54181 1.25028 0.95303 0.98400 1.00996 0.86259 0.79243 0.83624 0.77601 1.21462 1.21844 1.20331 1.19244 0.92865 0.84720 1.40979 0.91529 1.44002 1.36136 1.01096 1.49822 1.20835 0.88681 0.98505 0.87815 1.22178 1.00455 0.95215 1.00093 1.21678 0.96813 0.98568 0.98240 1.21742 0.97883 0.81054 0.97044 0.89517 1.45896 1.08947 1.15840 1.65939 1.17116 0.82859 0.85180 0.77272 1.90812 1.46901 1.49413 1.54853 1.20474 0.93463 0.97467 1.17195 1.24256 1.00354 0.89649 0.95476 1.77211 0.86536 1.23710 1.23527 1.45646 1.06695 1.09079 1.47308 1.17613 0.85734 0.90795 0.99508 1.20942 1.01092 0.91681 0.99860 1.21105 0.92429 0.99861 0.98195 1.21284 0.96976 0.95994 1.00417 1.21016 0.98977 0.93673 0.97424 1.20943 0.90616 1.01362 1.02971 1.23026 1.00272 0.84755 0.94256 1.21189 0.97963 0.86761 0.92648 0.93716 0.96293 0.89358 0.92739 0.92419 0.93048 0.92221 0.77359 0.78631 0.84299 0.84961 0.85305 0.84764 0.84832 0.79140 0.96481 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 11.22 55.49 0.62 -25.83 16 2 C 0.00 0.03 4.90 -17.43 -0.09 -0.06 16 3 Si 0.90 22.24 29.59 -169.99 -5.03 17.21 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.49 16 9 N -0.59 -15.04 2.99 -172.33 -0.52 -15.55 16 10 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 11 C -0.14 -2.60 6.08 -26.62 -0.16 -2.76 16 12 C -0.11 -1.83 5.36 -26.69 -0.14 -1.98 16 13 C 0.13 2.29 2.60 -67.81 -0.18 2.12 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 N -0.72 -10.32 5.07 -54.77 -0.28 -10.59 16 16 C 0.59 9.28 7.78 -12.53 -0.10 9.18 16 17 O -0.54 -10.76 16.56 5.27 0.09 -10.67 16 18 C -0.27 -3.46 6.13 -105.05 -0.64 -4.10 16 19 C 0.09 0.97 11.50 -16.96 -0.20 0.78 16 20 N -0.29 -3.44 11.77 30.87 0.36 -3.08 16 21 N -0.31 -3.57 3.77 -10.21 -0.04 -3.61 16 22 C 0.16 1.51 6.68 -83.60 -0.56 0.95 16 23 C -0.12 -0.99 9.65 -39.40 -0.38 -1.37 16 24 C -0.10 -0.62 10.04 -39.61 -0.40 -1.01 16 25 C -0.13 -0.72 10.04 -39.55 -0.40 -1.12 16 26 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 27 C -0.14 -1.08 9.45 -39.40 -0.37 -1.45 16 28 C 0.12 1.44 10.60 -16.43 -0.17 1.27 16 29 C 0.14 3.12 6.09 -3.71 -0.02 3.10 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.39 4.26 7.56 -40.82 -0.31 3.95 16 38 H 0.20 1.36 7.50 -52.49 -0.39 0.97 16 39 H 0.14 1.20 7.68 -52.49 -0.40 0.79 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 43 H 0.13 0.87 6.71 -52.49 -0.35 0.52 16 44 H 0.19 1.85 7.01 -52.48 -0.37 1.49 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 1.38 7.94 -51.93 -0.41 0.97 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.64 381.40 -9.71 -44.35 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.30 Total: 2.70 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -4.37 Total: -0.67 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.15 Total: -58.67 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.64 -9.71 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007847973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.061 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds