Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48505 * 109.47234 * 240.00160 * 3 2 1 5 5 H 1.48508 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47489 * 119.99360 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99482 * 163.09026 * 7 2 1 9 9 N 1.36932 * 119.99659 * 343.09709 * 7 2 1 10 10 C 1.46921 * 120.63360 * 331.80042 * 9 7 2 11 11 C 1.53173 * 108.76821 * 233.63500 * 10 9 7 12 12 C 1.53036 * 109.32579 * 305.35560 * 11 10 9 13 13 C 1.53037 * 109.52971 * 61.37355 * 12 11 10 14 14 H 1.08999 * 109.50007 * 58.59246 * 13 12 11 15 15 N 1.46504 * 109.50165 * 178.68899 * 13 12 11 16 16 C 1.34773 * 120.00266 * 204.99932 * 15 13 12 17 17 O 1.21613 * 119.99858 * 359.97438 * 16 15 13 18 18 C 1.47404 * 120.00134 * 179.97438 * 16 15 13 19 19 C 1.41328 * 126.40990 * 359.68324 * 18 16 15 20 20 N 1.30483 * 108.07093 * 179.85313 * 19 18 16 21 21 N 1.39940 * 108.91005 * 0.41537 * 20 19 18 22 22 C 1.40155 * 125.76841 * 179.71257 * 21 20 19 23 23 C 1.38847 * 120.06386 * 179.74939 * 22 21 20 24 24 C 1.38121 * 119.92663 * 179.74178 * 23 22 21 25 25 C 1.38279 * 120.06943 * 0.51172 * 24 23 22 26 26 C 1.38277 * 120.13499 * 359.76151 * 25 24 23 27 27 C 1.38120 * 120.06722 * 359.97438 * 26 25 24 28 28 C 1.34540 * 108.45927 * 359.73381 * 21 20 19 29 29 C 1.46931 * 120.62863 * 151.82986 * 9 7 2 30 30 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58679 * 353.42240 * 10 9 7 32 32 H 1.08997 * 109.59028 * 113.85019 * 10 9 7 33 33 H 1.08999 * 109.47568 * 185.40349 * 11 10 9 34 34 H 1.08998 * 109.49726 * 65.31984 * 11 10 9 35 35 H 1.09002 * 109.46229 * 301.35465 * 12 11 10 36 36 H 1.08997 * 109.46074 * 181.38544 * 12 11 10 37 37 H 0.97005 * 119.99758 * 24.99870 * 15 13 12 38 38 H 1.08006 * 125.96679 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.03568 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.96244 * 180.25382 * 24 23 22 41 41 H 1.08000 * 119.92840 * 179.74632 * 25 24 23 42 42 H 1.07999 * 119.96859 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.03371 * 180.02562 * 27 26 25 44 44 H 1.07997 * 126.31055 * 179.97438 * 28 21 20 45 45 H 1.09003 * 109.58260 * 6.57400 * 29 9 7 46 46 H 1.08999 * 109.58201 * 246.15465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3700 -2.3622 0.3459 10 6 0.2263 -2.3401 1.2679 11 6 0.4985 -3.3189 2.4142 12 6 0.8131 -4.7006 1.8365 13 6 2.0682 -4.6170 0.9648 14 1 2.9032 -4.2530 1.5633 15 7 2.3867 -5.9462 0.4373 16 6 3.6528 -6.2461 0.0859 17 8 4.5308 -5.4132 0.2063 18 6 3.9734 -7.5836 -0.4442 19 6 3.0660 -8.6504 -0.6339 20 7 3.7282 -9.6629 -1.1228 21 7 5.0734 -9.3019 -1.2588 22 6 6.0974 -10.1257 -1.7456 23 6 7.3959 -9.6421 -1.8353 24 6 8.4039 -10.4581 -2.3105 25 6 8.1191 -11.7520 -2.7066 26 6 6.8259 -12.2346 -2.6237 27 6 5.8146 -11.4253 -2.1443 28 6 5.2175 -8.0306 -0.8427 29 6 1.8140 -3.6529 -0.1982 30 1 -0.4849 0.8401 -0.0004 31 1 0.0993 -1.3344 1.6684 32 1 -0.6769 -2.6411 0.7371 33 1 -0.3820 -3.3837 3.0535 34 1 1.3483 -2.9670 2.9991 35 1 -0.0272 -5.0412 1.2315 36 1 0.9830 -5.4047 2.6510 37 1 1.6863 -6.6104 0.3410 38 1 2.0085 -8.6302 -0.4153 39 1 7.6181 -8.6302 -1.5303 40 1 9.4148 -10.0838 -2.3766 41 1 8.9083 -12.3867 -3.0816 42 1 6.6064 -13.2455 -2.9342 43 1 4.8048 -11.8029 -2.0794 44 1 6.1369 -7.4643 -0.8236 45 1 2.7345 -3.5132 -0.7650 46 1 1.0402 -4.0608 -0.8486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007847975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 93.816356 kcal Electronic energy + Delta-G solvation = -28151.092985 eV Core-core repulsion = 24235.967485 eV Total energy + Delta-G solvation = -3915.125500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96995 -39.62654 -39.03903 -37.19357 -34.32598 -33.93983 -32.35662 -31.72032 -30.58613 -30.40702 -29.72927 -28.32318 -25.24085 -24.41721 -23.66039 -22.58573 -22.04969 -21.43723 -20.92442 -19.92021 -19.38919 -18.64713 -16.98779 -16.72584 -16.17089 -15.81092 -15.78347 -15.50984 -14.96974 -14.67792 -14.51774 -14.36691 -14.02311 -13.94240 -13.64659 -13.41356 -13.17088 -13.07461 -12.97586 -12.36955 -12.30924 -12.15369 -11.80120 -11.76681 -11.26458 -11.04698 -10.85707 -10.77613 -10.74198 -10.23767 -10.20553 -9.91961 -9.86451 -9.59564 -9.53550 -9.50154 -9.44348 -8.78479 -8.48938 -8.33580 -6.62221 -5.74301 -3.16568 0.33568 0.81836 1.63118 1.88194 1.97710 3.28738 3.42069 3.44408 3.48311 3.52033 3.57297 4.04228 4.29639 4.44118 4.45952 4.56213 4.63266 4.81948 4.85403 4.96207 5.09750 5.21169 5.31884 5.40775 5.46295 5.48222 5.59228 5.67021 5.75116 5.77428 5.83128 5.97028 6.10803 6.14187 6.20922 6.22248 6.29163 6.57203 6.65407 6.69665 6.73202 6.74557 6.89253 7.05603 7.17488 7.39958 7.68415 7.82630 7.87030 8.48102 8.54695 9.26613 9.88929 10.44884 11.34424 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002081 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.617937 B =13454.281029 C =14427.903903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.087 0.913 15 N -0.716 5.716 16 C 0.590 3.410 17 O -0.542 6.542 18 C -0.272 4.272 19 C 0.091 3.909 20 N -0.292 5.292 21 N -0.315 5.315 22 C 0.155 3.845 23 C -0.138 4.138 24 C -0.092 4.092 25 C -0.128 4.128 26 C -0.097 4.097 27 C -0.116 4.116 28 C 0.124 3.876 29 C 0.142 3.858 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.393 0.607 38 H 0.197 0.803 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.192 0.808 45 H 0.058 0.942 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -25.469 -1.947 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.023 3.977 14 H 0.105 0.895 15 N -0.366 5.366 16 C 0.376 3.624 17 O -0.420 6.420 18 C -0.286 4.286 19 C -0.097 4.097 20 N -0.110 5.110 21 N -0.087 5.087 22 C 0.063 3.937 23 C -0.159 4.159 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.136 4.136 28 C -0.023 4.023 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.226 0.774 38 H 0.214 0.786 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.209 0.791 45 H 0.076 0.924 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 11.111 -25.921 -2.303 28.296 hybrid contribution -0.006 1.366 0.203 1.381 sum 11.105 -24.555 -2.100 27.031 Atomic orbital electron populations 1.70031 1.05213 1.25543 1.54129 1.25037 0.95312 0.98386 1.00957 0.86349 0.78883 0.83217 0.78222 1.20879 1.21688 1.20979 1.19180 0.92627 0.84649 1.41441 0.91626 1.43988 1.35650 1.01204 1.50202 1.20833 0.88614 0.98428 0.87957 1.22177 1.00427 0.95256 1.00088 1.21678 0.96773 0.98573 0.98276 1.21743 0.97835 0.81135 0.97015 0.89512 1.45897 1.08756 1.16139 1.65824 1.17116 0.82877 0.85141 0.77295 1.90814 1.46959 1.49427 1.54791 1.20473 0.93381 0.97515 1.17222 1.24260 1.00381 0.89669 0.95428 1.77215 0.86487 1.23748 1.23536 1.45647 1.06536 1.09379 1.47165 1.17612 0.85678 0.90838 0.99523 1.20945 0.90599 1.01330 1.03019 1.21017 0.98956 0.93682 0.97437 1.21284 0.96978 0.96029 1.00380 1.21102 0.92404 0.99849 0.98234 1.20942 1.01085 0.91737 0.99811 1.23027 1.00257 0.84812 0.94215 1.21198 0.97967 0.86776 0.92633 0.93652 0.89330 0.96308 0.92746 0.92418 0.92220 0.93060 0.77360 0.78630 0.84831 0.84765 0.85305 0.84962 0.84298 0.79142 0.92364 0.96467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.20 55.49 0.62 -25.84 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 22.23 29.59 -169.99 -5.03 17.20 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -7.07 9.58 -15.06 -0.14 -7.21 16 8 H 0.07 1.87 7.88 -52.49 -0.41 1.46 16 9 N -0.59 -15.05 2.99 -172.34 -0.52 -15.56 16 10 C 0.17 3.96 5.30 -3.72 -0.02 3.94 16 11 C -0.14 -2.60 6.08 -26.62 -0.16 -2.76 16 12 C -0.11 -1.84 5.35 -26.69 -0.14 -1.98 16 13 C 0.13 2.30 2.60 -67.81 -0.18 2.12 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.72 -10.33 5.07 -54.77 -0.28 -10.60 16 16 C 0.59 9.29 7.78 -12.53 -0.10 9.19 16 17 O -0.54 -10.77 16.56 5.27 0.09 -10.68 16 18 C -0.27 -3.46 6.13 -105.05 -0.64 -4.11 16 19 C 0.09 0.97 11.50 -16.95 -0.19 0.78 16 20 N -0.29 -3.44 11.77 30.88 0.36 -3.08 16 21 N -0.31 -3.57 3.77 -10.21 -0.04 -3.61 16 22 C 0.16 1.51 6.68 -83.60 -0.56 0.95 16 23 C -0.14 -1.08 9.45 -39.40 -0.37 -1.45 16 24 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 25 C -0.13 -0.72 10.04 -39.55 -0.40 -1.12 16 26 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 27 C -0.12 -0.99 9.65 -39.40 -0.38 -1.37 16 28 C 0.12 1.44 10.61 -16.43 -0.17 1.27 16 29 C 0.14 3.12 6.09 -3.71 -0.02 3.10 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.39 4.27 7.56 -40.82 -0.31 3.96 16 38 H 0.20 1.36 7.50 -52.48 -0.39 0.97 16 39 H 0.13 0.87 6.71 -52.49 -0.35 0.52 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 1.20 7.68 -52.48 -0.40 0.80 16 44 H 0.19 1.85 7.01 -52.49 -0.37 1.49 16 45 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -34.62 381.38 -9.71 -44.33 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.30 Total: 2.79 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.37 Total: -0.68 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.15 Total: -58.70 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.62 -9.71 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007847975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.147 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds