Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48505 * 109.47234 * 240.00160 * 3 2 1 5 5 H 1.48508 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47489 * 119.99360 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99482 * 163.09026 * 7 2 1 9 9 N 1.36932 * 119.99659 * 343.09709 * 7 2 1 10 10 C 1.46921 * 120.63360 * 331.80042 * 9 7 2 11 11 C 1.53173 * 108.76821 * 233.63500 * 10 9 7 12 12 C 1.53036 * 109.32579 * 305.35560 * 11 10 9 13 13 C 1.53037 * 109.52971 * 61.37355 * 12 11 10 14 14 H 1.08999 * 109.50007 * 58.59246 * 13 12 11 15 15 N 1.46504 * 109.50165 * 178.68899 * 13 12 11 16 16 C 1.34773 * 120.00266 * 204.99932 * 15 13 12 17 17 O 1.21613 * 119.99858 * 359.97438 * 16 15 13 18 18 C 1.47404 * 120.00134 * 179.97438 * 16 15 13 19 19 C 1.41328 * 126.40990 * 359.68324 * 18 16 15 20 20 N 1.30483 * 108.07093 * 179.85313 * 19 18 16 21 21 N 1.39940 * 108.91005 * 0.41537 * 20 19 18 22 22 C 1.40155 * 125.76841 * 179.71257 * 21 20 19 23 23 C 1.38847 * 120.06386 * 179.74939 * 22 21 20 24 24 C 1.38121 * 119.92663 * 179.74178 * 23 22 21 25 25 C 1.38279 * 120.06943 * 0.51172 * 24 23 22 26 26 C 1.38277 * 120.13499 * 359.76151 * 25 24 23 27 27 C 1.38120 * 120.06722 * 359.97438 * 26 25 24 28 28 C 1.34540 * 108.45927 * 359.73381 * 21 20 19 29 29 C 1.46931 * 120.62863 * 151.82986 * 9 7 2 30 30 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58679 * 353.42240 * 10 9 7 32 32 H 1.08997 * 109.59028 * 113.85019 * 10 9 7 33 33 H 1.08999 * 109.47568 * 185.40349 * 11 10 9 34 34 H 1.08998 * 109.49726 * 65.31984 * 11 10 9 35 35 H 1.09002 * 109.46229 * 301.35465 * 12 11 10 36 36 H 1.08997 * 109.46074 * 181.38544 * 12 11 10 37 37 H 0.97005 * 119.99758 * 24.99870 * 15 13 12 38 38 H 1.08006 * 125.96679 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.03568 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.96244 * 180.25382 * 24 23 22 41 41 H 1.08000 * 119.92840 * 179.74632 * 25 24 23 42 42 H 1.07999 * 119.96859 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.03371 * 180.02562 * 27 26 25 44 44 H 1.07997 * 126.31055 * 179.97438 * 28 21 20 45 45 H 1.09003 * 109.58260 * 6.57400 * 29 9 7 46 46 H 1.08999 * 109.58201 * 246.15465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3700 -2.3622 0.3459 10 6 0.2263 -2.3401 1.2679 11 6 0.4985 -3.3189 2.4142 12 6 0.8131 -4.7006 1.8365 13 6 2.0682 -4.6170 0.9648 14 1 2.9032 -4.2530 1.5633 15 7 2.3867 -5.9462 0.4373 16 6 3.6528 -6.2461 0.0859 17 8 4.5308 -5.4132 0.2063 18 6 3.9734 -7.5836 -0.4442 19 6 3.0660 -8.6504 -0.6339 20 7 3.7282 -9.6629 -1.1228 21 7 5.0734 -9.3019 -1.2588 22 6 6.0974 -10.1257 -1.7456 23 6 7.3959 -9.6421 -1.8353 24 6 8.4039 -10.4581 -2.3105 25 6 8.1191 -11.7520 -2.7066 26 6 6.8259 -12.2346 -2.6237 27 6 5.8146 -11.4253 -2.1443 28 6 5.2175 -8.0306 -0.8427 29 6 1.8140 -3.6529 -0.1982 30 1 -0.4849 0.8401 -0.0004 31 1 0.0993 -1.3344 1.6684 32 1 -0.6769 -2.6411 0.7371 33 1 -0.3820 -3.3837 3.0535 34 1 1.3483 -2.9670 2.9991 35 1 -0.0272 -5.0412 1.2315 36 1 0.9830 -5.4047 2.6510 37 1 1.6863 -6.6104 0.3410 38 1 2.0085 -8.6302 -0.4153 39 1 7.6181 -8.6302 -1.5303 40 1 9.4148 -10.0838 -2.3766 41 1 8.9083 -12.3867 -3.0816 42 1 6.6064 -13.2455 -2.9342 43 1 4.8048 -11.8029 -2.0794 44 1 6.1369 -7.4643 -0.8236 45 1 2.7345 -3.5132 -0.7650 46 1 1.0402 -4.0608 -0.8486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007847975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 72.269469 kcal Electronic energy + Delta-G solvation = -28152.027328 eV Core-core repulsion = 24235.967485 eV Total energy + Delta-G solvation = -3916.059843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81730 -40.72837 -39.87197 -38.80079 -35.90895 -34.78595 -34.02523 -32.34200 -32.31151 -31.47732 -30.68251 -29.59715 -27.23732 -25.38085 -24.32316 -23.86479 -23.62566 -22.60980 -21.73170 -21.20367 -20.74035 -19.60230 -18.68881 -17.80505 -17.16819 -16.87701 -16.70751 -16.66573 -16.34538 -15.95078 -15.72625 -15.51878 -15.14937 -15.03858 -14.84304 -14.69432 -14.55585 -14.17367 -14.05760 -13.80997 -13.75335 -13.37071 -13.00865 -12.73137 -12.65576 -12.56365 -12.46649 -12.13041 -11.98780 -11.94741 -11.70736 -11.53806 -11.50832 -11.28085 -10.92227 -10.59687 -10.35970 -10.05939 -10.04797 -9.20822 -8.66753 -7.89235 -5.34874 -0.35766 0.29792 0.76904 1.10351 1.15240 1.44876 1.47124 1.54598 2.21554 2.40843 2.52284 2.75129 3.24543 3.27978 3.56024 3.74515 3.83637 3.86955 3.90785 4.01104 4.11759 4.15892 4.21589 4.28889 4.39354 4.48200 4.51742 4.54229 4.61280 4.67551 4.85220 4.94975 4.99001 5.06230 5.10508 5.16083 5.21355 5.31243 5.32671 5.38157 5.48922 5.50501 5.60179 5.64810 5.65830 5.79025 6.01336 6.33721 6.38327 6.67069 7.14203 7.33399 7.84271 8.34142 9.16152 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002081 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.617937 B =13454.281029 C =14427.903903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.053 0.947 9 N -0.607 5.607 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.145 3.855 14 H 0.058 0.942 15 N -0.701 5.701 16 C 0.591 3.409 17 O -0.591 6.591 18 C -0.293 4.293 19 C 0.102 3.898 20 N -0.311 5.311 21 N -0.312 5.312 22 C 0.120 3.880 23 C -0.147 4.147 24 C -0.094 4.094 25 C -0.121 4.121 26 C -0.098 4.098 27 C -0.129 4.129 28 C 0.124 3.876 29 C 0.144 3.856 30 H 0.252 0.748 31 H 0.054 0.946 32 H 0.006 0.994 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.232 0.768 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.132 0.868 44 H 0.202 0.798 45 H 0.029 0.971 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.321 -28.043 -1.790 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.241 4.241 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.070 0.930 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.038 3.962 14 H 0.077 0.923 15 N -0.352 5.352 16 C 0.380 3.620 17 O -0.473 6.473 18 C -0.307 4.307 19 C -0.086 4.086 20 N -0.128 5.128 21 N -0.084 5.084 22 C 0.029 3.971 23 C -0.167 4.167 24 C -0.112 4.112 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.025 4.025 29 C 0.017 3.983 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.252 0.748 38 H 0.248 0.752 39 H 0.157 0.843 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.174 0.826 43 H 0.150 0.850 44 H 0.219 0.781 45 H 0.047 0.953 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 11.777 -28.580 -2.154 30.986 hybrid contribution -0.103 2.049 0.048 2.052 sum 11.674 -26.531 -2.106 29.062 Atomic orbital electron populations 1.70163 1.06334 1.26027 1.54926 1.25745 0.96166 1.01239 1.00991 0.85375 0.77703 0.79332 0.78242 1.20489 1.21271 1.20501 1.19357 0.92426 0.86329 1.41630 0.92956 1.44220 1.36064 1.01655 1.51172 1.20721 0.87561 0.98100 0.89024 1.22015 1.01367 0.95330 0.98236 1.21616 0.95878 0.97632 0.99100 1.21244 0.98053 0.81748 0.95141 0.92345 1.45607 1.09200 1.15183 1.65212 1.17498 0.82508 0.85721 0.76307 1.90788 1.48404 1.51187 1.56902 1.20212 0.94590 0.96633 1.19255 1.24755 1.01577 0.88252 0.94065 1.77192 0.86911 1.24431 1.24310 1.45797 1.06803 1.09274 1.46506 1.17989 0.86052 0.91477 1.01605 1.21184 0.90374 1.02049 1.03133 1.21393 0.99645 0.93778 0.96431 1.21701 0.97392 0.96074 0.98780 1.21430 0.92236 1.00639 0.97371 1.21055 1.01521 0.91750 1.00524 1.23266 1.00573 0.85170 0.93467 1.21236 0.96433 0.86513 0.94116 0.93882 0.92798 0.97626 0.89683 0.93452 0.90370 0.89344 0.74796 0.75228 0.84270 0.82298 0.82345 0.82587 0.85043 0.78108 0.95265 0.96044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 11.20 21.65 0.24 -55.47 16 2 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 3 Si 0.97 46.72 29.59 68.60 2.03 48.75 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.27 -15.70 9.58 84.03 0.81 -14.90 16 8 H 0.05 3.14 7.88 -2.91 -0.02 3.11 16 9 N -0.61 -32.05 2.99 -699.15 -2.09 -34.14 16 10 C 0.17 8.23 5.30 86.36 0.46 8.69 16 11 C -0.13 -4.66 6.08 30.66 0.19 -4.47 16 12 C -0.10 -3.05 5.35 30.62 0.16 -2.89 16 13 C 0.14 5.12 2.60 45.07 0.12 5.24 16 14 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 15 N -0.70 -19.38 5.07 -445.45 -2.26 -21.64 16 16 C 0.59 18.65 7.78 86.66 0.67 19.32 16 17 O -0.59 -24.34 16.56 -4.07 -0.07 -24.41 16 18 C -0.29 -7.32 6.13 -20.14 -0.12 -7.45 16 19 C 0.10 2.01 11.50 85.65 0.99 3.00 16 20 N -0.31 -7.07 11.77 -56.23 -0.66 -7.73 16 21 N -0.31 -7.01 3.77 -186.20 -0.70 -7.72 16 22 C 0.12 2.28 6.68 38.10 0.25 2.53 16 23 C -0.15 -2.17 9.45 22.39 0.21 -1.96 16 24 C -0.09 -0.94 10.04 22.25 0.22 -0.71 16 25 C -0.12 -1.02 10.04 22.29 0.22 -0.79 16 26 C -0.10 -1.04 10.04 22.25 0.22 -0.82 16 27 C -0.13 -2.11 9.65 22.39 0.22 -1.89 16 28 C 0.12 2.90 10.61 84.24 0.89 3.79 16 29 C 0.14 6.48 6.09 86.36 0.53 7.01 16 30 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 31 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.41 7.87 7.56 -92.70 -0.70 7.17 16 38 H 0.23 2.52 7.50 -2.91 -0.02 2.50 16 39 H 0.14 1.76 6.71 -2.91 -0.02 1.74 16 40 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 42 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.13 2.25 7.68 -2.91 -0.02 2.23 16 44 H 0.20 4.02 7.01 -2.91 -0.02 4.00 16 45 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 46 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -79.25 381.38 3.25 -76.00 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.30 Total: 14.87 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.46 Total: 11.48 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -5.47 Total: -126.69 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.07 Total: -24.41 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.25 3.25 -76.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007847975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.271 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds