Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00195 * 2 1 4 4 H 1.48502 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47031 * 299.99989 * 3 2 1 6 6 H 1.48507 * 109.47092 * 59.99568 * 3 2 1 7 7 C 1.38810 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00377 * 196.29819 * 7 2 1 9 9 N 1.36942 * 119.99419 * 16.29810 * 7 2 1 10 10 C 1.46923 * 120.63219 * 28.96936 * 9 7 2 11 11 C 1.53196 * 108.77291 * 126.41595 * 10 9 7 12 12 C 1.53034 * 109.31439 * 54.63288 * 11 10 9 13 13 C 1.53036 * 109.54105 * 298.63557 * 12 11 10 14 14 H 1.09003 * 109.49642 * 301.38244 * 13 12 11 15 15 N 1.46497 * 109.49868 * 181.31678 * 13 12 11 16 16 C 1.34775 * 120.00332 * 155.00026 * 15 13 12 17 17 O 1.21592 * 119.99628 * 359.97438 * 16 15 13 18 18 C 1.47599 * 120.00439 * 180.02562 * 16 15 13 19 19 C 1.39640 * 120.18996 * 354.55848 * 18 16 15 20 20 C 1.37839 * 119.91729 * 180.02562 * 19 18 16 21 21 C 1.38525 * 120.31327 * 359.97438 * 20 19 18 22 22 C 1.38086 * 120.38522 * 359.79186 * 21 20 19 23 23 C 1.38760 * 120.07537 * 0.46458 * 22 21 20 24 24 N 1.39700 * 120.15547 * 179.79465 * 23 22 21 25 25 C 1.35853 * 126.10094 * 275.17287 * 24 23 22 26 26 C 1.35278 * 107.61546 * 179.97438 * 25 24 23 27 27 C 1.39968 * 107.96636 * 359.97438 * 26 25 24 28 28 N 1.30822 * 108.36978 * 0.02562 * 27 26 25 29 29 C 1.46931 * 120.62801 * 208.99385 * 9 7 2 30 30 H 0.97008 * 120.00209 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58762 * 6.62803 * 10 9 7 32 32 H 1.09000 * 109.58368 * 246.19706 * 10 9 7 33 33 H 1.09000 * 109.49147 * 294.67940 * 11 10 9 34 34 H 1.09007 * 109.49303 * 174.58838 * 11 10 9 35 35 H 1.09005 * 109.46005 * 178.61127 * 12 11 10 36 36 H 1.09003 * 109.44882 * 58.64968 * 12 11 10 37 37 H 0.97004 * 120.00173 * 334.99865 * 15 13 12 38 38 H 1.08000 * 120.03775 * 0.04077 * 19 18 16 39 39 H 1.08000 * 119.84830 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.80839 * 180.02562 * 21 20 19 41 41 H 1.08000 * 119.96364 * 180.25436 * 22 21 20 42 42 H 1.08004 * 126.19332 * 359.71557 * 25 24 23 43 43 H 1.07997 * 126.01868 * 180.02562 * 26 25 24 44 44 H 1.08000 * 125.81336 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.58882 * 113.79937 * 29 9 7 46 46 H 1.09004 * 109.58539 * 353.37089 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0576 -1.2208 0.2630 9 7 1.3667 -2.3643 -0.3318 10 6 0.2252 -2.3499 -1.2566 11 6 0.4960 -3.3449 -2.3896 12 6 0.8042 -4.7199 -1.7928 13 6 2.0576 -4.6297 -0.9195 14 1 2.8955 -4.2772 -1.5210 15 7 2.3698 -5.9530 -0.3740 16 6 3.6339 -6.2531 -0.0158 17 8 4.5154 -5.4258 -0.1459 18 6 3.9486 -7.5866 0.5333 19 6 2.9240 -8.5001 0.7897 20 6 3.2243 -9.7436 1.3030 21 6 4.5387 -10.0928 1.5658 22 6 5.5623 -9.2011 1.3127 23 6 5.2779 -7.9430 0.8010 24 7 6.3117 -7.0381 0.5482 25 6 6.8754 -6.1942 1.4514 26 6 7.8364 -5.4906 0.8099 27 6 7.8642 -5.9144 -0.5238 28 7 6.9527 -6.8395 -0.6815 29 6 1.8045 -3.6494 0.2302 30 1 -0.4851 0.8401 -0.0004 31 1 0.1029 -1.3491 -1.6706 32 1 -0.6803 -2.6405 -0.7239 33 1 1.3484 -3.0038 -2.9771 34 1 -0.3833 -3.4149 -3.0301 35 1 0.9730 -5.4355 -2.5976 36 1 -0.0388 -5.0491 -1.1852 37 1 1.6667 -6.6132 -0.2705 38 1 1.8977 -8.2327 0.5857 39 1 2.4309 -10.4491 1.5012 40 1 4.7647 -11.0694 1.9676 41 1 6.5850 -9.4819 1.5163 42 1 6.6026 -6.0989 2.4921 43 1 8.4711 -4.7355 1.2497 44 1 8.5254 -5.5411 -1.2918 45 1 1.0278 -4.0458 0.8841 46 1 2.7243 -3.5059 0.7972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008660744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 109.143232 kcal Electronic energy + Delta-G solvation = -29590.024298 eV Core-core repulsion = 25675.563421 eV Total energy + Delta-G solvation = -3914.460877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34589 -39.94950 -38.65643 -37.19509 -34.45055 -33.41560 -32.60336 -31.52736 -30.44878 -30.01845 -29.19500 -28.41936 -25.27682 -24.38271 -23.46130 -22.20630 -22.03148 -20.87989 -20.71604 -20.25000 -19.42952 -18.25383 -17.41986 -16.78211 -16.22835 -15.56117 -15.28295 -15.06125 -14.85167 -14.65841 -14.29324 -14.01281 -13.79301 -13.67838 -13.56396 -13.39592 -13.11990 -12.76842 -12.57635 -12.41444 -12.37880 -12.31014 -11.84148 -11.80159 -11.08574 -10.89105 -10.78529 -10.63926 -10.26274 -10.20664 -10.00779 -9.90369 -9.64868 -9.60186 -9.44115 -9.31783 -9.17329 -8.81150 -8.48475 -8.39647 -6.64776 -5.77276 -3.20681 0.43569 0.76388 2.01345 2.55470 2.78911 3.06446 3.24554 3.39994 3.47766 3.52275 3.55753 4.36515 4.45451 4.53546 4.57879 4.80061 4.91930 4.93867 5.06363 5.21965 5.27789 5.37525 5.42213 5.53994 5.61738 5.67082 5.71092 5.78290 5.87706 5.89398 5.94270 6.08216 6.14212 6.15244 6.23263 6.26790 6.52572 6.61170 6.65913 6.69293 6.81787 6.84026 6.98961 7.28477 7.35991 7.64496 7.69923 7.82800 7.85127 8.39522 8.48739 9.23660 9.85395 10.41607 11.31459 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.003341 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.876303 B = 8379.209368 C = 9819.090838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.168 3.832 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.128 3.872 14 H 0.086 0.914 15 N -0.717 5.717 16 C 0.546 3.454 17 O -0.507 6.507 18 C -0.111 4.111 19 C -0.082 4.082 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.110 4.110 23 C 0.193 3.807 24 N -0.328 5.328 25 C 0.077 3.923 26 C -0.262 4.262 27 C 0.050 3.950 28 N -0.275 5.275 29 C 0.144 3.856 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.392 0.608 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.181 0.819 45 H 0.016 0.984 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -21.890 2.523 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.043 3.957 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.023 3.977 14 H 0.104 0.896 15 N -0.368 5.368 16 C 0.331 3.669 17 O -0.382 6.382 18 C -0.116 4.116 19 C -0.102 4.102 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.130 4.130 23 C 0.102 3.898 24 N -0.107 5.107 25 C -0.066 4.066 26 C -0.291 4.291 27 C -0.138 4.138 28 N -0.094 5.094 29 C 0.017 3.983 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.226 0.774 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.198 0.802 45 H 0.034 0.966 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.123 -21.950 1.634 23.135 hybrid contribution 0.260 1.171 0.655 1.367 sum 7.383 -20.778 2.289 22.170 Atomic orbital electron populations 1.70039 1.05252 1.25370 1.54205 1.25047 0.95307 0.98397 1.00768 0.86218 0.79568 0.83793 0.77240 1.20113 1.21510 1.21705 1.19258 0.92439 0.84491 1.41748 0.91611 1.43992 1.35821 1.01437 1.49736 1.20825 0.88645 0.98193 0.88055 1.22185 1.00481 0.95243 1.00029 1.21677 0.96685 0.98668 0.98238 1.21759 0.97927 0.81123 0.96865 0.89582 1.46050 1.08770 1.16845 1.65140 1.18007 0.83297 0.86539 0.79055 1.90890 1.45942 1.48999 1.52408 1.20440 0.93018 0.95832 1.02320 1.21332 0.98660 0.93038 0.97125 1.21247 0.97003 0.96375 0.98459 1.21230 0.92227 0.99416 0.98176 1.21292 1.00662 0.91646 0.99378 1.17139 0.84747 0.88961 0.98972 1.45318 1.27504 1.30443 1.07405 1.22524 0.95023 0.92916 0.96137 1.21398 1.05721 1.07313 0.94699 1.23819 0.97285 0.95630 0.97072 1.77401 1.09806 1.21054 1.01113 1.21163 0.97848 0.86822 0.92504 0.93725 0.89373 0.96294 0.92414 0.92680 0.93103 0.92262 0.77396 0.84596 0.84606 0.84604 0.84740 0.81519 0.83560 0.80228 0.96596 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 11.22 55.49 0.62 -25.87 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 22.30 29.58 -169.99 -5.03 17.28 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.25 -7.14 9.58 -15.06 -0.14 -7.28 16 8 H 0.07 1.91 7.88 -52.49 -0.41 1.50 16 9 N -0.59 -15.17 2.99 -172.32 -0.52 -15.68 16 10 C 0.17 4.02 5.29 -3.71 -0.02 4.00 16 11 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 12 C -0.11 -1.89 5.35 -26.70 -0.14 -2.03 16 13 C 0.13 2.38 2.61 -67.81 -0.18 2.20 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 N -0.72 -10.80 5.03 -54.71 -0.28 -11.08 16 16 C 0.55 9.09 7.72 -12.44 -0.10 9.00 16 17 O -0.51 -10.55 13.84 5.28 0.07 -10.47 16 18 C -0.11 -1.46 5.89 -104.82 -0.62 -2.07 16 19 C -0.08 -0.75 9.52 -39.20 -0.37 -1.12 16 20 C -0.11 -0.78 10.02 -39.62 -0.40 -1.17 16 21 C -0.09 -0.64 10.03 -39.53 -0.40 -1.03 16 22 C -0.11 -1.05 9.96 -39.44 -0.39 -1.44 16 23 C 0.19 2.53 6.05 -83.34 -0.50 2.03 16 24 N -0.33 -4.96 2.01 -10.37 -0.02 -4.98 16 25 C 0.08 1.07 10.83 -16.83 -0.18 0.88 16 26 C -0.26 -3.56 10.80 -39.99 -0.43 -3.99 16 27 C 0.05 0.72 12.02 -17.33 -0.21 0.51 16 28 N -0.28 -4.58 12.08 30.64 0.37 -4.21 16 29 C 0.14 3.22 6.09 -3.71 -0.02 3.19 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.09 2.36 6.10 -51.93 -0.32 2.04 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.39 4.49 6.67 -40.82 -0.27 4.22 16 38 H 0.14 0.94 6.44 -52.49 -0.34 0.60 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.18 2.01 8.06 -52.49 -0.42 1.58 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -35.79 378.95 -9.77 -45.56 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.35 Total: 4.88 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -4.35 Total: -1.14 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.18 Total: -61.82 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.79 -9.77 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008660744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.704 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds