Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00444 * 2 1 4 4 H 1.48497 * 109.47493 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47363 * 300.00373 * 3 2 1 6 6 H 1.48504 * 109.47073 * 60.00116 * 3 2 1 7 7 C 1.38814 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00353 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00062 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.44201 * 32.42751 * 10 9 7 12 12 C 1.55948 * 110.49108 * 269.73153 * 10 9 7 13 13 C 1.56405 * 105.78357 * 248.87421 * 12 10 9 14 14 C 1.51002 * 101.59863 * 25.01491 * 13 12 10 15 15 H 1.08995 * 109.72773 * 69.24943 * 14 13 12 16 16 C 1.50348 * 125.54425 * 203.99894 * 14 13 12 17 17 N 1.49211 * 104.86017 * 144.30831 * 16 14 13 18 18 C 1.34778 * 126.05843 * 172.93253 * 17 16 14 19 19 O 1.21779 * 120.00072 * 175.87888 * 18 17 16 20 20 C 1.41819 * 119.99861 * 355.88353 * 18 17 16 21 21 C 1.38520 * 126.78781 * 6.43944 * 20 18 17 22 22 N 1.32327 * 108.21432 * 179.89013 * 21 20 18 23 23 C 1.33196 * 109.81600 * 0.38967 * 22 21 20 24 24 C 1.40649 * 131.81957 * 179.71603 * 23 22 21 25 25 C 1.36286 * 119.38659 * 180.02562 * 24 23 22 26 26 C 1.40174 * 119.60649 * 359.97438 * 25 24 23 27 27 C 1.35263 * 120.12926 * 359.97438 * 26 25 24 28 28 N 1.35954 * 120.63510 * 0.02609 * 27 26 25 29 29 C 1.49698 * 107.88290 * 352.93036 * 17 16 14 30 30 C 1.50286 * 110.49801 * 154.99740 * 10 9 7 31 31 H 1.08997 * 109.99313 * 199.14616 * 30 10 9 32 32 H 0.97008 * 119.99624 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00446 * 359.97438 * 9 7 2 34 34 H 1.09002 * 110.18514 * 7.94830 * 12 10 9 35 35 H 1.09000 * 110.18591 * 129.79273 * 12 10 9 36 36 H 1.09002 * 111.00006 * 266.93090 * 13 12 10 37 37 H 1.09007 * 110.99707 * 143.09893 * 13 12 10 38 38 H 1.09003 * 110.36221 * 263.15291 * 16 14 13 39 39 H 1.09002 * 110.36376 * 25.46234 * 16 14 13 40 40 H 1.08001 * 125.89365 * 0.05010 * 21 20 18 41 41 H 1.08004 * 120.30828 * 0.02562 * 24 23 22 42 42 H 1.07999 * 120.19542 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.93798 * 179.97438 * 26 25 24 44 44 H 1.07993 * 119.68394 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.84629 * 216.67002 * 29 17 16 46 46 H 1.09004 * 111.01458 * 93.13827 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 1 2.9944 -3.5558 0.5468 12 6 2.3260 -4.1324 -1.4624 13 6 1.4380 -5.4037 -1.6657 14 6 0.3418 -5.1735 -0.6530 15 1 -0.2833 -4.3390 -0.9707 16 6 -0.5071 -6.2439 -0.0252 17 7 -0.7361 -5.7792 1.3741 18 6 -1.5561 -6.3533 2.2765 19 8 -1.6032 -5.9251 3.4155 20 6 -2.3639 -7.4563 1.8996 21 6 -2.3335 -8.1322 0.6909 22 7 -3.2375 -9.0976 0.7339 23 6 -3.8625 -9.0789 1.9100 24 6 -4.8900 -9.8806 2.4389 25 6 -5.3504 -9.6334 3.6976 26 6 -4.7940 -8.5864 4.4453 27 6 -3.8057 -7.8271 3.9196 28 7 -3.3407 -8.0670 2.6648 29 6 0.1065 -4.5622 1.5979 30 6 1.2156 -4.7507 0.5922 31 1 1.8487 -5.5824 0.9011 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3881 -0.0016 34 1 2.0375 -3.3550 -2.1699 35 1 3.3788 -4.3848 -1.5885 36 1 1.9968 -6.3112 -1.4371 37 1 1.0339 -5.4402 -2.6774 38 1 -1.4556 -6.3348 -0.5546 39 1 0.0218 -7.1969 -0.0266 40 1 -1.6824 -7.9112 -0.1419 41 1 -5.3103 -10.6846 1.8530 42 1 -6.1386 -10.2411 4.1168 43 1 -5.1550 -8.3855 5.4432 44 1 -3.3825 -7.0220 4.5018 45 1 0.5022 -4.5459 2.6134 46 1 -0.4568 -3.6528 1.3883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026297639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 102.141413 kcal Electronic energy + Delta-G solvation = -29392.650423 eV Core-core repulsion = 25477.885925 eV Total energy + Delta-G solvation = -3914.764498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.16418 -40.52585 -38.56408 -37.65619 -35.33041 -33.87423 -33.34807 -31.16838 -30.80777 -30.17660 -28.62119 -28.43878 -25.63251 -24.52487 -24.03032 -23.30078 -22.67628 -22.18359 -20.03639 -19.94456 -18.92398 -17.65488 -17.47509 -17.18414 -16.80265 -16.47297 -15.88379 -15.75223 -15.16126 -14.88672 -14.77722 -14.51692 -14.37245 -13.93336 -13.67405 -13.40381 -12.94420 -12.77732 -12.64235 -12.37244 -12.27568 -12.17742 -11.87415 -11.54781 -11.31131 -11.18014 -10.99856 -10.86136 -10.68270 -10.57376 -10.45790 -10.26651 -10.07067 -9.90686 -9.63992 -9.59000 -9.20877 -8.94452 -8.65516 -8.12616 -6.99477 -5.79538 -3.08498 0.40682 0.55943 2.03299 2.13550 3.07265 3.18172 3.33291 3.42032 3.48052 3.50096 3.85120 4.12101 4.20663 4.44750 4.50991 4.57394 4.68715 4.76496 4.89481 4.99925 5.13362 5.16916 5.28301 5.35793 5.45241 5.48120 5.55491 5.61665 5.63414 5.75892 5.77744 5.81290 5.90226 6.00771 6.08014 6.12732 6.16709 6.24912 6.29442 6.36504 6.43013 6.51552 6.64517 6.66348 6.80544 7.03531 7.43205 7.51802 7.69703 8.14024 8.38804 9.50388 10.06447 10.40834 11.42896 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.002626 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.879191 B =10662.009564 C =11626.565144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.194 3.806 11 H 0.057 0.943 12 C -0.145 4.145 13 C -0.095 4.095 14 C -0.129 4.129 15 H 0.092 0.908 16 C 0.110 3.890 17 N -0.611 5.611 18 C 0.610 3.390 19 O -0.559 6.559 20 C -0.135 4.135 21 C 0.092 3.908 22 N -0.497 5.497 23 C 0.240 3.760 24 C -0.092 4.092 25 C -0.087 4.087 26 C -0.149 4.149 27 C 0.078 3.922 28 N -0.323 5.323 29 C 0.135 3.865 30 C -0.121 4.121 31 H 0.076 0.924 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.203 0.797 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.178 0.822 45 H 0.079 0.921 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -21.626 3.640 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.083 3.917 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.133 4.133 14 C -0.148 4.148 15 H 0.110 0.890 16 C -0.012 4.012 17 N -0.345 5.345 18 C 0.401 3.599 19 O -0.440 6.440 20 C -0.249 4.249 21 C -0.067 4.067 22 N -0.216 5.216 23 C 0.000 4.000 24 C -0.112 4.112 25 C -0.111 4.111 26 C -0.169 4.169 27 C -0.047 4.047 28 N 0.007 4.993 29 C 0.015 3.985 30 C -0.141 4.141 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.195 0.805 45 H 0.098 0.902 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.757 -21.766 3.718 23.404 hybrid contribution 0.252 1.543 0.555 1.659 sum -7.504 -20.223 4.274 21.990 Atomic orbital electron populations 1.69661 1.05094 1.25591 1.57642 1.24735 0.95483 0.97687 1.02935 0.86146 0.78806 0.84247 0.77143 1.20566 1.21954 1.21925 1.19290 0.91056 0.84038 1.42666 0.91038 1.42444 1.05691 0.99592 1.88228 1.20143 0.94047 0.85247 0.92302 0.92465 1.23860 0.97925 0.96173 1.00616 1.21717 0.95420 0.98686 0.97514 1.22249 0.96932 0.98638 0.96984 0.89006 1.21668 0.99746 0.97834 0.81936 1.49434 1.43243 1.29533 1.12294 1.14949 0.79239 0.81327 0.84370 1.90812 1.68627 1.65659 1.18890 1.19830 1.03403 1.06379 0.95254 1.23987 0.96313 0.90733 0.95715 1.70553 1.10962 1.23230 1.16865 1.21158 0.98702 0.91345 0.88824 1.20338 0.94923 0.99755 0.96175 1.21172 0.99445 0.97059 0.93449 1.20965 0.97248 0.96725 1.01984 1.22122 0.96731 1.01528 0.84268 1.42421 1.23439 1.21971 1.11441 1.21483 0.90914 0.86357 0.99739 1.22491 0.96187 1.00716 0.94689 0.90577 0.93547 0.78144 0.90530 0.92789 0.91960 0.91899 0.90367 0.90775 0.78106 0.82729 0.83584 0.82672 0.80535 0.90238 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.34 9.96 -15.06 -0.15 -6.49 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -16.72 4.81 -53.21 -0.26 -16.98 16 10 C 0.19 3.52 3.46 -67.71 -0.23 3.29 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.27 6.73 -23.32 -0.16 -2.43 16 13 C -0.10 -1.18 6.72 -25.90 -0.17 -1.36 16 14 C -0.13 -1.75 2.73 -90.27 -0.25 -2.00 16 15 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 16 C 0.11 1.31 4.80 -3.86 -0.02 1.29 16 17 N -0.61 -9.26 3.43 -174.89 -0.60 -9.86 16 18 C 0.61 10.05 7.67 -14.89 -0.11 9.94 16 19 O -0.56 -10.70 15.69 5.12 0.08 -10.62 16 20 C -0.13 -1.97 6.80 -83.48 -0.57 -2.53 16 21 C 0.09 1.19 10.34 -17.23 -0.18 1.01 16 22 N -0.50 -6.76 11.25 -12.27 -0.14 -6.89 16 23 C 0.24 3.00 7.77 -156.06 -1.21 1.78 16 24 C -0.09 -0.79 10.10 -39.37 -0.40 -1.19 16 25 C -0.09 -0.57 10.07 -39.56 -0.40 -0.96 16 26 C -0.15 -1.10 10.00 -39.91 -0.40 -1.50 16 27 C 0.08 0.86 10.51 -16.78 -0.18 0.69 16 28 N -0.32 -4.33 2.96 -60.15 -0.18 -4.50 16 29 C 0.14 2.29 6.54 -3.31 -0.02 2.27 16 30 C -0.12 -1.86 2.59 -90.35 -0.23 -2.09 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.38 9.55 6.19 -40.82 -0.25 9.30 16 34 H 0.08 1.40 7.98 -51.93 -0.41 0.98 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.84 6.42 -51.93 -0.33 0.50 16 39 H 0.07 0.73 7.46 -51.93 -0.39 0.35 16 40 H 0.20 2.03 4.35 -52.49 -0.23 1.81 16 41 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.18 2.04 6.82 -52.49 -0.36 1.68 16 45 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 46 H 0.09 1.72 6.96 -51.93 -0.36 1.35 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -33.41 367.20 -10.71 -44.12 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.08 Total: 9.67 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -4.78 Total: -0.73 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.45 Total: -64.98 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.41 -10.71 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.258 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds