Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48500 * 109.47092 * 240.00390 * 3 2 1 5 5 H 1.48498 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47355 * 119.99823 * 3 2 1 7 7 C 1.38812 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00064 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.44037 * 32.44336 * 10 9 7 12 12 C 1.55936 * 110.49741 * 269.73697 * 10 9 7 13 13 C 1.56401 * 105.78851 * 233.78867 * 12 10 9 14 14 C 1.51007 * 101.60116 * 334.98373 * 13 12 10 15 15 H 1.08999 * 110.05306 * 290.63574 * 14 13 12 16 16 C 1.50270 * 125.69204 * 156.23181 * 14 13 12 17 17 N 1.49218 * 104.89912 * 215.88401 * 16 14 13 18 18 C 1.34778 * 126.05796 * 186.92641 * 17 16 14 19 19 O 1.21589 * 119.99964 * 179.69107 * 18 17 16 20 20 C 1.47591 * 119.99926 * 359.68280 * 18 17 16 21 21 C 1.36576 * 125.91827 * 180.02562 * 20 18 17 22 22 N 1.36195 * 107.09355 * 180.02562 * 21 20 18 23 23 C 1.36677 * 132.29208 * 180.02562 * 22 21 20 24 24 C 1.34844 * 120.64158 * 179.97438 * 23 22 21 25 25 C 1.40580 * 120.34132 * 0.03660 * 24 23 22 26 26 C 1.35895 * 119.72624 * 359.97438 * 25 24 23 27 27 C 1.37270 * 107.33945 * 0.02562 * 22 21 20 28 28 N 1.32233 * 108.37950 * 359.97438 * 27 22 21 29 29 C 1.49695 * 107.88130 * 6.66044 * 17 16 14 30 30 C 1.50292 * 110.49440 * 154.99779 * 10 9 7 31 31 H 1.09003 * 109.99126 * 39.09815 * 30 10 9 32 32 H 0.97003 * 119.99652 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00207 * 0.02562 * 9 7 2 34 34 H 1.09002 * 110.18728 * 352.86839 * 12 10 9 35 35 H 1.09002 * 110.18940 * 114.71366 * 12 10 9 36 36 H 1.09008 * 111.00092 * 93.05902 * 13 12 10 37 37 H 1.09001 * 111.00726 * 216.86329 * 13 12 10 38 38 H 1.09000 * 110.46172 * 96.96964 * 16 14 13 39 39 H 1.09005 * 110.23063 * 334.67967 * 16 14 13 40 40 H 1.08004 * 126.44818 * 0.28896 * 21 20 18 41 41 H 1.08003 * 119.68029 * 359.97291 * 23 22 21 42 42 H 1.08000 * 119.82951 * 180.02562 * 24 23 22 43 43 H 1.07991 * 120.13450 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.32237 * 180.02562 * 26 25 24 45 45 H 1.09006 * 110.84740 * 143.60173 * 29 17 16 46 46 H 1.09004 * 110.84796 * 267.00949 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9947 -3.5560 0.5453 12 6 2.3251 -4.1317 -1.4638 13 6 1.7640 -5.5893 -1.5468 14 6 1.8375 -6.0256 -0.1030 15 1 2.8780 -6.1447 0.1989 16 6 1.0048 -7.1044 0.5303 17 7 0.7398 -6.6203 1.9167 18 6 0.1390 -7.3196 2.8999 19 8 -0.0166 -6.8167 3.9959 20 6 -0.3301 -8.6957 2.6460 21 6 -0.9515 -9.5099 3.5496 22 7 -1.2150 -10.6854 2.9143 23 6 -1.8144 -11.8412 3.3300 24 6 -1.9569 -12.8834 2.4863 25 6 -1.4887 -12.7955 1.1636 26 6 -0.8902 -11.6532 0.7352 27 6 -0.7479 -10.5693 1.6287 28 7 -0.2188 -9.3661 1.4844 29 6 1.2652 -5.2227 2.0238 30 6 1.2160 -4.7509 0.5913 31 1 0.1801 -4.6395 0.2711 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3880 -0.0023 34 1 1.8027 -3.4868 -2.1704 35 1 3.3953 -4.1284 -1.6706 36 1 0.7340 -5.5916 -1.9036 37 1 2.3950 -6.2156 -2.1774 38 1 1.5551 -8.0449 0.5558 39 1 0.0685 -7.2264 -0.0142 40 1 -1.1926 -9.2657 4.5736 41 1 -2.1775 -11.9206 4.3440 42 1 -2.4330 -13.7904 2.8285 43 1 -1.6049 -13.6321 0.4907 44 1 -0.5273 -11.5750 -0.2790 45 1 0.6192 -4.6128 2.6555 46 1 2.2878 -5.2205 2.4013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026409475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = 95.300677 kcal Electronic energy + Delta-G solvation = -28799.274573 eV Core-core repulsion = 24884.213438 eV Total energy + Delta-G solvation = -3915.061135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.17154 -40.33663 -38.61337 -37.40475 -35.23233 -34.09492 -33.29944 -31.00366 -30.82682 -29.36743 -29.13225 -28.34440 -25.56094 -24.76359 -23.45697 -23.04487 -22.93697 -22.02964 -20.06765 -19.30680 -19.01871 -18.16779 -17.24345 -17.13432 -16.78615 -16.39800 -16.08943 -15.57424 -15.04001 -14.92116 -14.69303 -14.56159 -14.36535 -13.86874 -13.65963 -13.54457 -12.85514 -12.74830 -12.62396 -12.24945 -12.20972 -12.03553 -11.77169 -11.50472 -11.43457 -11.33216 -10.97306 -10.74433 -10.71499 -10.58632 -10.30568 -10.12875 -10.05813 -9.88119 -9.69207 -9.47872 -9.25352 -8.86044 -8.50565 -8.25937 -6.91882 -5.72326 -3.01185 0.23839 0.83426 1.87713 2.09817 2.98936 3.00958 3.47424 3.48831 3.51857 3.52756 3.71884 4.00701 4.26141 4.27410 4.42246 4.61337 4.62832 4.83204 5.01243 5.03964 5.05527 5.25085 5.36185 5.43441 5.55565 5.60229 5.61933 5.66807 5.70295 5.75343 5.93492 5.96542 6.00528 6.02840 6.08562 6.11309 6.22939 6.24135 6.33472 6.44602 6.48587 6.57446 6.62399 6.75686 6.86165 7.13252 7.34502 7.63371 7.74339 8.23234 8.45990 9.57066 10.14679 10.49233 11.50107 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.002253 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.248278 B =12423.280718 C =13109.751613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.197 3.803 11 H 0.056 0.944 12 C -0.143 4.143 13 C -0.095 4.095 14 C -0.132 4.132 15 H 0.078 0.922 16 C 0.137 3.863 17 N -0.607 5.607 18 C 0.611 3.389 19 O -0.542 6.542 20 C 0.017 3.983 21 C -0.020 4.020 22 N -0.365 5.365 23 C 0.055 3.945 24 C -0.139 4.139 25 C -0.105 4.105 26 C -0.072 4.072 27 C 0.221 3.779 28 N -0.457 5.457 29 C 0.131 3.869 30 C -0.119 4.119 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.196 0.804 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 -30.604 2.614 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.086 3.914 11 H 0.074 0.926 12 C -0.184 4.184 13 C -0.134 4.134 14 C -0.152 4.152 15 H 0.096 0.904 16 C 0.016 3.984 17 N -0.340 5.340 18 C 0.398 3.602 19 O -0.419 6.419 20 C -0.116 4.116 21 C -0.155 4.155 22 N -0.037 5.037 23 C -0.066 4.066 24 C -0.160 4.160 25 C -0.129 4.129 26 C -0.092 4.092 27 C -0.024 4.024 28 N -0.178 5.178 29 C 0.010 3.990 30 C -0.139 4.139 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.213 0.787 41 H 0.183 0.817 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.103 0.897 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.498 -29.818 2.635 30.038 hybrid contribution -0.303 0.517 0.704 0.924 sum -2.801 -29.301 3.340 29.623 Atomic orbital electron populations 1.69654 1.05098 1.25733 1.57593 1.24745 0.95495 0.97681 1.03034 0.86281 0.78515 0.83653 0.77811 1.21316 1.21782 1.21285 1.19208 0.90965 0.84129 1.42746 0.91194 1.42494 1.05704 0.99667 1.88143 1.20088 0.94126 0.84949 0.92278 0.92565 1.23797 0.99886 0.94060 1.00648 1.21721 1.01165 0.97012 0.93483 1.22244 0.99903 0.95408 0.97609 0.90355 1.21227 0.99779 0.96428 0.80997 1.49622 1.56994 1.15420 1.11964 1.16482 0.77736 0.82655 0.83374 1.90813 1.58066 1.69877 1.23156 1.20612 1.04339 0.96054 0.90606 1.22610 1.07689 0.84462 1.00760 1.42777 1.37708 1.11009 1.12237 1.21684 0.99038 0.84604 1.01256 1.20857 1.02559 0.98617 0.93946 1.21063 0.97844 0.98009 0.95951 1.20364 0.99922 0.89658 0.99297 1.21072 1.01533 0.95526 0.84312 1.70998 1.21059 1.02009 1.23715 1.21534 0.99421 0.80422 0.97605 1.22514 1.01747 0.95877 0.93750 0.90074 0.93491 0.78159 0.90829 0.92719 0.91658 0.92230 0.90363 0.91111 0.78719 0.81739 0.83055 0.83854 0.82873 0.89750 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.94 5.10 -53.21 -0.27 -18.21 16 10 C 0.20 3.85 3.41 -67.71 -0.23 3.62 16 11 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 12 C -0.14 -2.45 6.74 -23.33 -0.16 -2.61 16 13 C -0.10 -1.33 6.72 -25.90 -0.17 -1.50 16 14 C -0.13 -1.86 2.76 -90.30 -0.25 -2.11 16 15 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.14 1.92 5.41 -3.89 -0.02 1.90 16 17 N -0.61 -9.77 3.42 -172.81 -0.59 -10.36 16 18 C 0.61 10.27 7.88 -12.44 -0.10 10.17 16 19 O -0.54 -10.43 17.20 5.29 0.09 -10.34 16 20 C 0.02 0.24 6.80 -83.45 -0.57 -0.32 16 21 C -0.02 -0.23 11.47 -16.21 -0.19 -0.41 16 22 N -0.37 -3.54 2.93 -62.37 -0.18 -3.72 16 23 C 0.06 0.32 10.93 -16.60 -0.18 0.14 16 24 C -0.14 -0.58 9.98 -39.90 -0.40 -0.98 16 25 C -0.10 -0.50 10.06 -39.54 -0.40 -0.90 16 26 C -0.07 -0.54 10.11 -39.30 -0.40 -0.93 16 27 C 0.22 2.42 7.80 -156.04 -1.22 1.20 16 28 N -0.46 -6.13 8.86 -9.35 -0.08 -6.22 16 29 C 0.13 2.21 6.81 -3.31 -0.02 2.19 16 30 C -0.12 -2.03 2.42 -90.34 -0.22 -2.25 16 31 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.38 10.29 7.69 -40.82 -0.31 9.98 16 34 H 0.07 1.43 7.98 -51.93 -0.41 1.01 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.05 7.38 -51.93 -0.38 0.67 16 39 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 40 H 0.20 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.17 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.15 0.16 8.06 -52.49 -0.42 -0.26 16 43 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 44 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -34.57 378.55 -10.95 -45.52 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.56 Total: 7.81 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.76 Total: -0.06 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -0.40 Total: -66.19 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.57 -10.95 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.818 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds