Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47267 * 299.99832 * 3 2 1 6 6 H 1.48494 * 109.47391 * 60.00011 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21632 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47315 * 119.99881 * 179.97438 * 17 16 15 20 20 C 1.36448 * 126.19280 * 179.70992 * 19 17 16 21 21 N 1.36132 * 106.76564 * 179.90232 * 20 19 17 22 22 C 1.40213 * 126.22070 * 180.14997 * 21 20 19 23 23 C 1.38821 * 120.06028 * 0.02562 * 22 21 20 24 24 C 1.38131 * 119.93213 * 179.71902 * 23 22 21 25 25 C 1.38278 * 120.06280 * 0.57435 * 24 23 22 26 26 C 1.38278 * 120.13202 * 359.67634 * 25 24 23 27 27 C 1.38128 * 120.06157 * 0.04849 * 26 25 24 28 28 C 1.36109 * 107.56412 * 0.36184 * 21 20 19 29 29 N 1.30157 * 109.00794 * 359.77393 * 28 21 20 30 30 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 40 40 H 1.08000 * 126.61138 * 0.04190 * 20 19 17 41 41 H 1.07995 * 120.03681 * 359.97363 * 23 22 21 42 42 H 1.07996 * 119.96983 * 180.30238 * 24 23 22 43 43 H 1.07995 * 119.93558 * 179.70503 * 25 24 23 44 44 H 1.07999 * 119.96848 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.02707 * 179.97438 * 27 26 25 46 46 H 1.07998 * 125.50248 * 179.77035 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8074 -4.3763 -3.9535 19 6 4.4462 -6.5338 -3.3384 20 6 5.1319 -6.8910 -4.4626 21 7 5.5876 -8.1575 -4.2589 22 6 6.3470 -8.9194 -5.1582 23 6 6.7023 -8.3897 -6.3912 24 6 7.4555 -9.1405 -7.2727 25 6 7.8454 -10.4228 -6.9328 26 6 7.4886 -10.9550 -5.7075 27 6 6.7403 -10.2069 -4.8196 28 6 5.1679 -8.5516 -3.0256 29 7 4.4891 -7.5845 -2.4797 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4234 -1.8591 1.0698 32 1 -0.6984 -2.3872 -0.6175 33 1 0.0113 -4.1089 1.8206 34 1 -1.2709 -4.3832 0.5936 35 1 0.3276 -4.9734 -1.1088 36 1 1.1305 -5.6530 0.3446 37 1 1.6416 -3.6213 -2.4174 38 1 3.1752 -2.9312 -1.8342 39 1 3.0992 -5.7173 -1.2622 40 1 5.2856 -6.2848 -5.3432 41 1 6.3937 -7.3901 -6.6593 42 1 7.7364 -8.7271 -8.2301 43 1 8.4302 -11.0097 -7.6255 44 1 7.7949 -11.9568 -5.4445 45 1 6.4616 -10.6233 -3.8628 46 1 5.3660 -9.5119 -2.5729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027899683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 81.624547 kcal Electronic energy + Delta-G solvation = -27941.919568 eV Core-core repulsion = 24026.265391 eV Total energy + Delta-G solvation = -3915.654176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.72862 -39.68656 -38.94131 -37.47184 -34.60819 -34.06544 -32.40560 -31.85892 -30.18911 -30.04028 -29.41883 -28.44305 -25.18874 -24.40294 -23.96049 -23.35818 -21.94103 -21.20843 -20.26790 -19.80081 -19.47889 -18.92873 -17.16486 -16.65722 -16.24843 -16.04293 -15.82934 -15.41716 -15.30011 -14.75391 -14.58914 -14.51660 -14.20521 -13.96285 -13.85702 -13.76896 -13.37649 -13.14773 -12.82735 -12.30418 -12.02607 -11.81292 -11.73135 -11.69613 -11.27589 -11.04547 -10.88928 -10.76204 -10.59850 -10.12119 -10.05277 -9.91797 -9.77515 -9.68738 -9.66847 -9.60931 -9.17201 -8.78738 -8.57394 -8.43587 -6.78230 -5.71062 -3.07176 0.30049 0.68279 1.64578 2.13993 2.26107 3.18369 3.43224 3.49852 3.51992 3.57782 3.67651 4.02645 4.14531 4.23519 4.36169 4.52564 4.54335 4.65856 4.72374 4.99746 5.08916 5.18525 5.31249 5.39100 5.41398 5.49301 5.60363 5.70508 5.71653 5.84855 5.88639 5.89779 6.09816 6.14168 6.19855 6.24928 6.34362 6.54391 6.62558 6.71294 6.76632 6.80866 6.91058 7.15113 7.43827 7.58773 7.66939 7.85363 7.98494 8.31416 8.58892 9.23432 9.83876 10.51306 11.40804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002021 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.740031 B =13852.055652 C =14805.859418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.109 3.891 16 N -0.705 5.705 17 C 0.594 3.406 18 O -0.546 6.546 19 C -0.041 4.041 20 C 0.028 3.972 21 N -0.411 5.411 22 C 0.133 3.867 23 C -0.132 4.132 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.093 4.093 27 C -0.132 4.132 28 C 0.192 3.808 29 N -0.453 5.453 30 H 0.252 0.748 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.404 0.596 40 H 0.191 0.809 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.762 -25.679 -11.214 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.016 4.016 16 N -0.355 5.355 17 C 0.378 3.622 18 O -0.423 6.423 19 C -0.169 4.169 20 C -0.107 4.107 21 N -0.090 5.090 22 C 0.041 3.959 23 C -0.151 4.151 24 C -0.110 4.110 25 C -0.145 4.145 26 C -0.111 4.111 27 C -0.152 4.152 28 C -0.090 4.090 29 N -0.171 5.171 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.208 0.792 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 13.329 -24.766 -11.006 30.202 hybrid contribution 0.819 0.507 -0.571 1.120 sum 14.148 -24.258 -11.577 30.375 Atomic orbital electron populations 1.69949 1.04985 1.25089 1.56272 1.24901 0.95694 0.97836 1.01628 0.86064 0.78949 0.83711 0.77187 1.20375 1.21645 1.21784 1.19056 0.90470 0.82189 1.44123 0.90547 1.44503 1.05864 1.00790 1.80195 1.21466 0.84679 0.90314 0.98859 1.23026 0.97440 0.99569 0.98667 1.22638 0.96998 0.97059 0.99804 1.21129 0.94494 0.87930 0.92102 0.94342 1.22271 0.96690 0.83282 0.99350 1.45931 1.53221 1.18657 1.17696 1.16870 0.78406 0.84290 0.82638 1.90813 1.61934 1.44693 1.44895 1.20838 1.06852 0.96062 0.93107 1.22738 1.00452 0.85684 1.01807 1.43083 1.38939 1.12357 1.14621 1.17883 0.95882 0.91839 0.90286 1.21003 1.00395 1.01312 0.92424 1.21096 0.96395 0.94158 0.99336 1.21301 1.00415 0.95777 0.97037 1.21064 0.96717 0.99897 0.93433 1.20867 1.00712 0.92297 1.01291 1.25274 0.99475 1.01147 0.83111 1.70654 1.17246 0.99743 1.29436 0.93720 0.90814 0.95703 0.92321 0.92356 0.91840 0.92238 0.91883 0.90994 0.76146 0.79164 0.84793 0.84804 0.85226 0.84807 0.84848 0.76938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.54 55.49 0.58 -26.56 16 2 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.46 9.73 -15.06 -0.15 -6.61 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.59 -15.07 3.13 -162.57 -0.51 -15.58 16 10 C 0.17 4.20 5.42 -2.53 -0.01 4.19 16 11 C -0.15 -2.83 7.10 -24.52 -0.17 -3.00 16 12 C -0.13 -2.25 6.07 -24.83 -0.15 -2.41 16 13 C 0.15 3.17 3.22 -66.95 -0.22 2.95 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 15 C 0.11 2.25 5.09 -4.04 -0.02 2.23 16 16 N -0.71 -12.33 5.40 -61.42 -0.33 -12.67 16 17 C 0.59 10.69 7.81 -12.57 -0.10 10.59 16 18 O -0.55 -11.53 16.88 5.25 0.09 -11.44 16 19 C -0.04 -0.61 6.97 -83.08 -0.58 -1.19 16 20 C 0.03 0.33 10.57 -16.29 -0.17 0.16 16 21 N -0.41 -4.01 2.97 -61.91 -0.18 -4.20 16 22 C 0.13 1.03 6.63 -83.59 -0.55 0.48 16 23 C -0.13 -0.91 9.46 -39.40 -0.37 -1.28 16 24 C -0.09 -0.47 10.04 -39.61 -0.40 -0.87 16 25 C -0.13 -0.56 10.04 -39.55 -0.40 -0.95 16 26 C -0.09 -0.41 10.04 -39.61 -0.40 -0.81 16 27 C -0.13 -0.75 9.46 -39.41 -0.37 -1.12 16 28 C 0.19 1.86 11.88 -89.68 -1.07 0.80 16 29 N -0.45 -5.97 10.99 -10.97 -0.12 -6.09 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.07 2.00 6.86 -51.93 -0.36 1.64 16 32 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.12 7.78 -51.93 -0.40 0.71 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.40 8.03 -51.93 -0.42 0.99 16 38 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 39 H 0.40 6.29 7.96 -40.82 -0.32 5.97 16 40 H 0.19 1.97 7.11 -52.49 -0.37 1.60 16 41 H 0.13 0.84 6.78 -52.49 -0.36 0.48 16 42 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.13 0.28 8.06 -52.49 -0.42 -0.14 16 45 H 0.13 0.48 6.74 -52.48 -0.35 0.13 16 46 H 0.21 1.11 7.03 -52.49 -0.37 0.74 16 LS Contribution 382.90 15.07 5.77 5.77 Total: -1.00 -34.81 382.90 -11.24 -46.05 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.29 Total: 4.17 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -5.22 Total: 2.97 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -0.56 Total: -65.09 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.81 -11.24 -46.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027899683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.672 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds