Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47267 * 299.99832 * 3 2 1 6 6 H 1.48494 * 109.47391 * 60.00011 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21632 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47315 * 119.99881 * 179.97438 * 17 16 15 20 20 C 1.36448 * 126.19280 * 179.70992 * 19 17 16 21 21 N 1.36132 * 106.76564 * 179.90232 * 20 19 17 22 22 C 1.40213 * 126.22070 * 180.14997 * 21 20 19 23 23 C 1.38821 * 120.06028 * 0.02562 * 22 21 20 24 24 C 1.38131 * 119.93213 * 179.71902 * 23 22 21 25 25 C 1.38278 * 120.06280 * 0.57435 * 24 23 22 26 26 C 1.38278 * 120.13202 * 359.67634 * 25 24 23 27 27 C 1.38128 * 120.06157 * 0.04849 * 26 25 24 28 28 C 1.36109 * 107.56412 * 0.36184 * 21 20 19 29 29 N 1.30157 * 109.00794 * 359.77393 * 28 21 20 30 30 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 40 40 H 1.08000 * 126.61138 * 0.04190 * 20 19 17 41 41 H 1.07995 * 120.03681 * 359.97363 * 23 22 21 42 42 H 1.07996 * 119.96983 * 180.30238 * 24 23 22 43 43 H 1.07995 * 119.93558 * 179.70503 * 25 24 23 44 44 H 1.07999 * 119.96848 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.02707 * 179.97438 * 27 26 25 46 46 H 1.07998 * 125.50248 * 179.77035 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8074 -4.3763 -3.9535 19 6 4.4462 -6.5338 -3.3384 20 6 5.1319 -6.8910 -4.4626 21 7 5.5876 -8.1575 -4.2589 22 6 6.3470 -8.9194 -5.1582 23 6 6.7023 -8.3897 -6.3912 24 6 7.4555 -9.1405 -7.2727 25 6 7.8454 -10.4228 -6.9328 26 6 7.4886 -10.9550 -5.7075 27 6 6.7403 -10.2069 -4.8196 28 6 5.1679 -8.5516 -3.0256 29 7 4.4891 -7.5845 -2.4797 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4234 -1.8591 1.0698 32 1 -0.6984 -2.3872 -0.6175 33 1 0.0113 -4.1089 1.8206 34 1 -1.2709 -4.3832 0.5936 35 1 0.3276 -4.9734 -1.1088 36 1 1.1305 -5.6530 0.3446 37 1 1.6416 -3.6213 -2.4174 38 1 3.1752 -2.9312 -1.8342 39 1 3.0992 -5.7173 -1.2622 40 1 5.2856 -6.2848 -5.3432 41 1 6.3937 -7.3901 -6.6593 42 1 7.7364 -8.7271 -8.2301 43 1 8.4302 -11.0097 -7.6255 44 1 7.7949 -11.9568 -5.4445 45 1 6.4616 -10.6233 -3.8628 46 1 5.3660 -9.5119 -2.5729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027899683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 60.747512 kcal Electronic energy + Delta-G solvation = -27942.824864 eV Core-core repulsion = 24026.265391 eV Total energy + Delta-G solvation = -3916.559473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.55199 -40.67482 -39.91589 -39.18215 -35.80416 -35.22110 -34.38782 -32.30224 -31.52405 -31.00979 -30.74495 -29.86295 -26.83831 -26.09436 -24.52072 -24.45623 -22.86072 -22.00995 -21.89708 -21.25051 -20.85145 -19.83160 -18.74801 -17.84142 -17.42508 -16.95652 -16.94186 -16.71048 -16.19591 -16.02228 -15.90939 -15.65152 -15.54674 -15.11600 -14.75406 -14.62223 -14.57340 -14.28126 -13.99708 -13.82006 -13.65838 -13.41675 -13.03566 -12.86680 -12.70438 -12.65829 -12.08957 -11.98898 -11.89008 -11.79168 -11.70214 -11.54394 -11.47904 -11.41426 -11.19931 -10.69841 -10.20532 -10.04104 -9.92078 -9.35286 -8.87088 -7.88622 -5.26263 -0.27320 0.31514 0.71004 1.40052 1.43397 1.43424 1.45225 1.55050 2.20117 2.41593 2.49851 2.77352 3.23973 3.30378 3.55959 3.63688 3.74526 3.89605 3.93086 3.98751 4.05606 4.13017 4.24025 4.25542 4.38701 4.41477 4.44051 4.54799 4.65439 4.72093 4.75710 4.94756 4.98412 4.99032 5.13211 5.14870 5.21017 5.34069 5.37222 5.41229 5.46605 5.51108 5.55223 5.66735 5.77577 5.78214 6.10365 6.22689 6.43354 6.73303 7.08844 7.19277 7.75233 8.41273 9.22167 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002021 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.740031 B =13852.055652 C =14805.859418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.047 0.953 15 C 0.130 3.870 16 N -0.695 5.695 17 C 0.592 3.408 18 O -0.588 6.588 19 C -0.074 4.074 20 C 0.035 3.965 21 N -0.403 5.403 22 C 0.101 3.899 23 C -0.148 4.148 24 C -0.100 4.100 25 C -0.123 4.123 26 C -0.094 4.094 27 C -0.130 4.130 28 C 0.208 3.792 29 N -0.480 5.480 30 H 0.248 0.752 31 H 0.040 0.960 32 H -0.007 1.007 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.416 0.584 40 H 0.198 0.802 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.156 0.844 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.723 -29.745 -11.304 35.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.345 5.345 17 C 0.379 3.621 18 O -0.469 6.469 19 C -0.201 4.201 20 C -0.102 4.102 21 N -0.080 5.080 22 C 0.010 3.990 23 C -0.167 4.167 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.113 4.113 27 C -0.150 4.150 28 C -0.075 4.075 29 N -0.198 5.198 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.253 0.747 40 H 0.214 0.786 41 H 0.147 0.853 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 15.325 -28.908 -11.091 34.547 hybrid contribution 0.352 1.587 -0.667 1.757 sum 15.677 -27.321 -11.758 33.622 Atomic orbital electron populations 1.70145 1.06210 1.25338 1.57605 1.25685 0.96594 1.00984 1.02188 0.85088 0.78200 0.79734 0.76808 1.19353 1.22055 1.21357 1.19334 0.90701 0.83633 1.43155 0.90758 1.44758 1.06406 1.01784 1.80498 1.21293 0.83873 0.93520 0.96487 1.22896 0.99479 0.95320 0.99350 1.22616 0.95125 0.97265 1.00142 1.21301 0.95910 0.86855 0.91782 0.93517 1.21753 0.95144 0.83948 0.98815 1.45673 1.52994 1.17622 1.18231 1.17341 0.77745 0.85220 0.81821 1.90776 1.63476 1.46510 1.46111 1.20322 1.09198 0.95528 0.95035 1.22814 0.99429 0.86781 1.01167 1.43160 1.38352 1.11488 1.15004 1.18172 0.97473 0.92867 0.90527 1.21168 1.01089 1.01601 0.92867 1.21364 0.96076 0.94637 0.99760 1.21701 0.99498 0.95419 0.97492 1.21460 0.95841 1.00940 0.93023 1.21203 1.00046 0.91261 1.02450 1.26132 0.97192 1.01622 0.82565 1.70570 1.19131 1.00062 1.29998 0.94252 0.94198 0.98924 0.91094 0.89693 0.91618 0.88100 0.94151 0.94415 0.74677 0.78560 0.85307 0.83240 0.82812 0.82035 0.82638 0.72514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 10.54 21.65 0.23 -58.10 16 2 C -0.06 -3.59 5.47 84.86 0.46 -3.13 16 3 Si 0.97 47.86 29.55 68.60 2.03 49.89 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.88 9.73 84.03 0.82 -13.06 16 8 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.61 -32.09 3.13 -668.26 -2.09 -34.18 16 10 C 0.17 8.73 5.42 86.86 0.47 9.20 16 11 C -0.13 -4.82 7.10 32.03 0.23 -4.59 16 12 C -0.11 -3.81 6.07 31.82 0.19 -3.61 16 13 C 0.15 6.22 3.22 45.34 0.15 6.37 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 15 C 0.13 5.56 5.09 86.38 0.44 6.00 16 16 N -0.69 -24.66 5.40 -466.47 -2.52 -27.18 16 17 C 0.59 22.03 7.81 86.63 0.68 22.71 16 18 O -0.59 -26.20 16.88 -4.13 -0.07 -26.27 16 19 C -0.07 -2.20 6.97 40.51 0.28 -1.91 16 20 C 0.04 0.85 10.57 83.61 0.88 1.73 16 21 N -0.40 -7.22 2.97 -349.78 -1.04 -8.26 16 22 C 0.10 1.36 6.63 38.08 0.25 1.61 16 23 C -0.15 -1.87 9.46 22.38 0.21 -1.66 16 24 C -0.10 -0.83 10.04 22.25 0.22 -0.61 16 25 C -0.12 -0.67 10.04 22.29 0.22 -0.45 16 26 C -0.09 -0.47 10.04 22.25 0.22 -0.24 16 27 C -0.13 -1.02 9.46 22.38 0.21 -0.81 16 28 C 0.21 3.48 11.88 180.02 2.14 5.62 16 29 N -0.48 -11.95 10.99 -188.62 -2.07 -14.02 16 30 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 31 H 0.04 2.25 6.86 -2.39 -0.02 2.23 16 32 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.04 1.89 8.03 -2.39 -0.02 1.88 16 38 H 0.04 1.86 7.86 -2.39 -0.02 1.84 16 39 H 0.42 12.63 7.96 -92.71 -0.74 11.89 16 40 H 0.20 4.24 7.11 -2.91 -0.02 4.22 16 41 H 0.13 1.63 6.78 -2.91 -0.02 1.61 16 42 H 0.15 0.66 8.06 -2.91 -0.02 0.63 16 43 H 0.15 0.07 8.06 -2.91 -0.02 0.04 16 44 H 0.16 -0.11 8.06 -2.91 -0.02 -0.13 16 45 H 0.16 0.41 6.74 -2.91 -0.02 0.39 16 46 H 0.26 1.53 7.03 -2.91 -0.02 1.51 16 Total: -1.00 -80.92 382.90 2.82 -78.10 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.27 Total: 16.86 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 8.09 Total: 23.16 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -7.49 Total: -141.74 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.07 Total: -26.27 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -80.92 2.82 -78.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027899683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.846 kcal (2) G-P(sol) polarization free energy of solvation -80.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds