Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47126 * 245.02949 * 3 2 1 5 5 H 1.48505 * 109.47031 * 5.02952 * 3 2 1 6 6 H 1.48498 * 109.47104 * 125.02598 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99917 * 182.81602 * 7 2 1 9 9 N 1.36941 * 119.99962 * 2.81324 * 7 2 1 10 10 C 1.47428 * 125.64689 * 348.15110 * 9 7 2 11 11 C 1.54910 * 104.92715 * 204.09467 * 10 9 7 12 12 C 1.55282 * 101.52621 * 323.13035 * 11 10 9 13 13 C 1.47020 * 125.64773 * 168.17659 * 9 7 2 14 14 H 1.08999 * 109.88252 * 59.50385 * 13 9 7 15 15 C 1.52998 * 109.88219 * 298.33742 * 13 9 7 16 16 N 1.46498 * 109.47142 * 58.06466 * 15 13 9 17 17 C 1.34784 * 120.00062 * 83.73190 * 16 15 13 18 18 O 1.21640 * 119.99995 * 4.85739 * 17 16 15 19 19 C 1.47073 * 120.00012 * 184.85667 * 17 16 15 20 20 C 1.38073 * 126.49632 * 353.81019 * 19 17 16 21 21 C 1.39253 * 107.69600 * 179.90412 * 20 19 17 22 22 N 1.31015 * 108.82409 * 0.37212 * 21 20 19 23 23 N 1.36947 * 126.49620 * 174.13167 * 19 17 16 24 24 C 1.40024 * 126.16517 * 359.92976 * 23 19 17 25 25 C 1.38879 * 120.07407 * 314.94961 * 24 23 19 26 26 C 1.38103 * 119.92784 * 179.78690 * 25 24 23 27 27 C 1.38287 * 120.07117 * 0.46296 * 26 25 24 28 28 C 1.38285 * 120.14190 * 359.78826 * 27 26 25 29 29 C 1.38105 * 120.07125 * 359.97438 * 28 27 26 30 30 H 0.97004 * 120.00065 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.36730 * 322.98871 * 10 9 7 32 32 H 1.08999 * 110.36465 * 85.20643 * 10 9 7 33 33 H 1.08996 * 111.00364 * 81.12200 * 11 10 9 34 34 H 1.09000 * 111.00711 * 204.97731 * 11 10 9 35 35 H 1.08999 * 110.62249 * 277.00395 * 12 11 10 36 36 H 1.09000 * 110.75114 * 153.77946 * 12 11 10 37 37 H 1.08996 * 109.46943 * 178.06158 * 15 13 9 38 38 H 1.08996 * 109.47353 * 298.06405 * 15 13 9 39 39 H 0.96999 * 120.00564 * 263.73573 * 16 15 13 40 40 H 1.08002 * 126.15189 * 0.02562 * 20 19 17 41 41 H 1.08006 * 125.58673 * 180.13806 * 21 20 19 42 42 H 1.07998 * 120.03159 * 0.02562 * 25 24 23 43 43 H 1.07998 * 119.96529 * 180.22856 * 26 25 24 44 44 H 1.07999 * 119.93020 * 179.75962 * 27 26 25 45 45 H 1.08003 * 119.96340 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.03606 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0095 1.7509 -1.2692 5 1 1.2898 2.7438 0.1227 6 1 3.1936 1.6446 1.1465 7 6 2.0102 -1.2022 -0.0005 8 1 3.0891 -1.2028 0.0454 9 7 1.3267 -2.3874 -0.0593 10 6 -0.1274 -2.5505 0.1211 11 6 -0.3105 -4.0192 0.5783 12 6 0.7782 -4.7430 -0.2596 13 6 1.9215 -3.7079 -0.3121 14 1 2.6618 -3.9341 0.4553 15 6 2.5778 -3.7270 -1.6940 16 7 3.5948 -2.6750 -1.7663 17 6 4.8349 -2.9027 -1.2899 18 8 5.1360 -4.0081 -0.8811 19 6 5.8241 -1.8147 -1.2644 20 6 5.6692 -0.5512 -1.7992 21 6 6.8409 0.1596 -1.5524 22 7 7.6787 -0.6164 -0.9102 23 7 7.0758 -1.8646 -0.7110 24 6 7.6492 -2.9652 -0.0624 25 6 6.9103 -3.6899 0.8636 26 6 7.4773 -4.7775 1.4983 27 6 8.7826 -5.1394 1.2197 28 6 9.5228 -4.4167 0.3020 29 6 8.9600 -3.3311 -0.3398 30 1 -0.4850 0.8401 0.0004 31 1 -0.4938 -1.8664 0.8864 32 1 -0.6480 -2.3788 -0.8210 33 1 -0.1146 -4.1235 1.6454 34 1 -1.3062 -4.3852 0.3278 35 1 0.4094 -4.9613 -1.2618 36 1 1.1063 -5.6551 0.2389 37 1 3.0461 -4.6971 -1.8604 38 1 1.8204 -3.5532 -2.4584 39 1 3.3758 -1.8146 -2.1569 40 1 4.7955 -0.1802 -2.3144 41 1 7.0297 1.1817 -1.8459 42 1 5.8920 -3.4055 1.0842 43 1 6.9020 -5.3437 2.2158 44 1 9.2250 -5.9880 1.7202 45 1 10.5421 -4.7017 0.0869 46 1 9.5384 -2.7673 -1.0567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027973821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = 108.241330 kcal Electronic energy + Delta-G solvation = -30337.206253 eV Core-core repulsion = 26422.706267 eV Total energy + Delta-G solvation = -3914.499986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44228 -39.06959 -38.84304 -37.38684 -34.20614 -33.21587 -32.65233 -31.11139 -30.64210 -29.30473 -28.92634 -28.55961 -25.19077 -24.29617 -23.36145 -22.87187 -21.99329 -20.65896 -20.20690 -19.83244 -19.12521 -18.52043 -16.88849 -16.60096 -16.03511 -15.62500 -15.35219 -15.17447 -14.71555 -14.56419 -14.40967 -13.92675 -13.89473 -13.70440 -13.62527 -13.36186 -13.00903 -12.50265 -12.34538 -12.13478 -12.01226 -11.84413 -11.64754 -11.23337 -11.17384 -10.91234 -10.87280 -10.81481 -10.52275 -10.17232 -10.05818 -9.99229 -9.78122 -9.70843 -9.66730 -9.01458 -8.85465 -8.63870 -8.43619 -8.18136 -6.84899 -5.78690 -3.13498 0.81015 1.39985 1.65307 2.29061 2.64809 3.30867 3.40163 3.41025 3.47014 3.67793 3.74583 4.42247 4.67167 4.83458 4.91407 4.94042 5.11281 5.26604 5.32305 5.37332 5.44531 5.53560 5.54957 5.59690 5.64150 5.70375 5.83092 5.90919 5.94954 5.99372 6.12495 6.25610 6.30293 6.31101 6.36038 6.47377 6.49364 6.58230 6.62376 6.68613 6.72385 6.91060 7.03537 7.18307 7.53231 7.56622 7.59011 7.77808 7.93482 8.24747 8.51723 9.15128 9.76687 10.46150 11.31220 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.004586 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.027738 B = 6103.809398 C = 7749.451072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.074 0.926 9 N -0.593 5.593 10 C 0.168 3.832 11 C -0.148 4.148 12 C -0.122 4.122 13 C 0.143 3.857 14 H 0.037 0.963 15 C 0.111 3.889 16 N -0.677 5.677 17 C 0.575 3.425 18 O -0.542 6.542 19 C 0.046 3.954 20 C -0.213 4.213 21 C 0.045 3.955 22 N -0.274 5.274 23 N -0.297 5.297 24 C 0.144 3.856 25 C -0.066 4.066 26 C -0.108 4.108 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.106 4.106 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.410 0.590 40 H 0.162 0.838 41 H 0.192 0.808 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -7.297 -2.823 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.092 0.908 9 N -0.318 5.318 10 C 0.044 3.956 11 C -0.187 4.187 12 C -0.161 4.161 13 C 0.035 3.965 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.326 5.326 17 C 0.359 3.641 18 O -0.421 6.421 19 C -0.081 4.081 20 C -0.243 4.243 21 C -0.139 4.139 22 N -0.096 5.096 23 N -0.076 5.076 24 C 0.054 3.946 25 C -0.086 4.086 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.138 4.138 29 C -0.125 4.125 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.180 0.820 41 H 0.209 0.791 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.367 -7.982 -1.969 14.851 hybrid contribution -0.592 1.666 -0.591 1.865 sum 11.775 -6.316 -2.560 13.605 Atomic orbital electron populations 1.69919 1.04901 1.25134 1.56227 1.24834 0.95578 0.97509 1.02142 0.86388 0.78702 0.83701 0.78284 1.20691 1.21680 1.21139 1.18934 0.90435 0.82161 1.43527 0.90846 1.44525 1.03348 1.01117 1.82799 1.21519 0.84676 0.90251 0.99203 1.23033 0.96982 0.99739 0.98967 1.22509 0.96520 0.97165 0.99907 1.21353 0.93942 0.87438 0.93811 0.94493 1.22166 0.89214 0.89824 1.00273 1.45545 1.09117 1.18526 1.59388 1.16913 0.81920 0.86097 0.79170 1.90809 1.79227 1.23636 1.48425 1.21358 0.88101 0.97135 1.01531 1.22070 1.01264 0.92378 1.08574 1.23837 0.92038 1.00236 0.97793 1.77445 1.21623 0.89522 1.20979 1.45934 1.10040 1.09299 1.42319 1.17356 0.93777 0.87507 0.95981 1.21118 0.99773 0.95043 0.92705 1.20973 0.95191 0.96476 1.00063 1.21215 0.94469 0.99694 0.98024 1.20924 1.00043 0.95416 0.97388 1.20954 0.93645 0.97463 1.00476 0.93672 0.90351 0.96111 0.92497 0.92420 0.91900 0.92247 0.91291 0.90505 0.75414 0.82048 0.79097 0.85056 0.85256 0.85717 0.85477 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.16 10.42 55.49 0.58 -24.58 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 3 Si 0.90 20.73 29.55 -169.99 -5.02 15.70 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -5.56 8.51 -15.06 -0.13 -5.69 16 8 H 0.07 1.83 6.72 -52.49 -0.35 1.48 16 9 N -0.59 -13.78 3.13 -162.58 -0.51 -14.29 16 10 C 0.17 3.84 5.50 -2.53 -0.01 3.82 16 11 C -0.15 -2.69 7.10 -24.51 -0.17 -2.86 16 12 C -0.12 -2.04 6.48 -24.83 -0.16 -2.20 16 13 C 0.14 2.80 3.46 -66.96 -0.23 2.57 16 14 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 15 C 0.11 1.92 5.58 -4.04 -0.02 1.90 16 16 N -0.68 -11.91 3.38 -61.50 -0.21 -12.11 16 17 C 0.58 10.59 7.11 -12.67 -0.09 10.50 16 18 O -0.54 -10.74 12.74 5.24 0.07 -10.67 16 19 C 0.05 0.82 6.78 -82.06 -0.56 0.27 16 20 C -0.21 -3.36 10.32 -39.26 -0.41 -3.77 16 21 C 0.04 0.66 11.96 -17.52 -0.21 0.45 16 22 N -0.27 -4.59 12.42 30.53 0.38 -4.21 16 23 N -0.30 -5.25 3.73 -7.08 -0.03 -5.28 16 24 C 0.14 2.40 5.89 -83.64 -0.49 1.91 16 25 C -0.07 -1.09 7.38 -39.39 -0.29 -1.38 16 26 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 27 C -0.12 -1.31 10.04 -39.55 -0.40 -1.71 16 28 C -0.12 -1.38 10.04 -39.61 -0.40 -1.77 16 29 C -0.11 -1.49 9.88 -39.39 -0.39 -1.88 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.08 2.04 6.62 -51.93 -0.34 1.69 16 32 H 0.02 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.95 7.82 -51.93 -0.41 0.55 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.13 7.55 -51.93 -0.39 0.74 16 38 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 39 H 0.41 7.05 7.16 -40.82 -0.29 6.75 16 40 H 0.16 2.30 7.47 -52.49 -0.39 1.91 16 41 H 0.19 2.02 8.06 -52.48 -0.42 1.60 16 42 H 0.13 2.42 6.76 -52.49 -0.35 2.07 16 43 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -30.52 375.73 -9.85 -40.37 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.32 Total: 11.28 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.45 Total: -1.88 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.21 Total: -60.46 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.52 -9.85 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027973821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.609 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds