Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47126 * 245.02949 * 3 2 1 5 5 H 1.48505 * 109.47031 * 5.02952 * 3 2 1 6 6 H 1.48498 * 109.47104 * 125.02598 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99917 * 182.81602 * 7 2 1 9 9 N 1.36941 * 119.99962 * 2.81324 * 7 2 1 10 10 C 1.47428 * 125.64689 * 348.15110 * 9 7 2 11 11 C 1.54910 * 104.92715 * 204.09467 * 10 9 7 12 12 C 1.55282 * 101.52621 * 323.13035 * 11 10 9 13 13 C 1.47020 * 125.64773 * 168.17659 * 9 7 2 14 14 H 1.08999 * 109.88252 * 59.50385 * 13 9 7 15 15 C 1.52998 * 109.88219 * 298.33742 * 13 9 7 16 16 N 1.46498 * 109.47142 * 58.06466 * 15 13 9 17 17 C 1.34784 * 120.00062 * 83.73190 * 16 15 13 18 18 O 1.21640 * 119.99995 * 4.85739 * 17 16 15 19 19 C 1.47073 * 120.00012 * 184.85667 * 17 16 15 20 20 C 1.38073 * 126.49632 * 353.81019 * 19 17 16 21 21 C 1.39253 * 107.69600 * 179.90412 * 20 19 17 22 22 N 1.31015 * 108.82409 * 0.37212 * 21 20 19 23 23 N 1.36947 * 126.49620 * 174.13167 * 19 17 16 24 24 C 1.40024 * 126.16517 * 359.92976 * 23 19 17 25 25 C 1.38879 * 120.07407 * 314.94961 * 24 23 19 26 26 C 1.38103 * 119.92784 * 179.78690 * 25 24 23 27 27 C 1.38287 * 120.07117 * 0.46296 * 26 25 24 28 28 C 1.38285 * 120.14190 * 359.78826 * 27 26 25 29 29 C 1.38105 * 120.07125 * 359.97438 * 28 27 26 30 30 H 0.97004 * 120.00065 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.36730 * 322.98871 * 10 9 7 32 32 H 1.08999 * 110.36465 * 85.20643 * 10 9 7 33 33 H 1.08996 * 111.00364 * 81.12200 * 11 10 9 34 34 H 1.09000 * 111.00711 * 204.97731 * 11 10 9 35 35 H 1.08999 * 110.62249 * 277.00395 * 12 11 10 36 36 H 1.09000 * 110.75114 * 153.77946 * 12 11 10 37 37 H 1.08996 * 109.46943 * 178.06158 * 15 13 9 38 38 H 1.08996 * 109.47353 * 298.06405 * 15 13 9 39 39 H 0.96999 * 120.00564 * 263.73573 * 16 15 13 40 40 H 1.08002 * 126.15189 * 0.02562 * 20 19 17 41 41 H 1.08006 * 125.58673 * 180.13806 * 21 20 19 42 42 H 1.07998 * 120.03159 * 0.02562 * 25 24 23 43 43 H 1.07998 * 119.96529 * 180.22856 * 26 25 24 44 44 H 1.07999 * 119.93020 * 179.75962 * 27 26 25 45 45 H 1.08003 * 119.96340 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.03606 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0095 1.7509 -1.2692 5 1 1.2898 2.7438 0.1227 6 1 3.1936 1.6446 1.1465 7 6 2.0102 -1.2022 -0.0005 8 1 3.0891 -1.2028 0.0454 9 7 1.3267 -2.3874 -0.0593 10 6 -0.1274 -2.5505 0.1211 11 6 -0.3105 -4.0192 0.5783 12 6 0.7782 -4.7430 -0.2596 13 6 1.9215 -3.7079 -0.3121 14 1 2.6618 -3.9341 0.4553 15 6 2.5778 -3.7270 -1.6940 16 7 3.5948 -2.6750 -1.7663 17 6 4.8349 -2.9027 -1.2899 18 8 5.1360 -4.0081 -0.8811 19 6 5.8241 -1.8147 -1.2644 20 6 5.6692 -0.5512 -1.7992 21 6 6.8409 0.1596 -1.5524 22 7 7.6787 -0.6164 -0.9102 23 7 7.0758 -1.8646 -0.7110 24 6 7.6492 -2.9652 -0.0624 25 6 6.9103 -3.6899 0.8636 26 6 7.4773 -4.7775 1.4983 27 6 8.7826 -5.1394 1.2197 28 6 9.5228 -4.4167 0.3020 29 6 8.9600 -3.3311 -0.3398 30 1 -0.4850 0.8401 0.0004 31 1 -0.4938 -1.8664 0.8864 32 1 -0.6480 -2.3788 -0.8210 33 1 -0.1146 -4.1235 1.6454 34 1 -1.3062 -4.3852 0.3278 35 1 0.4094 -4.9613 -1.2618 36 1 1.1063 -5.6551 0.2389 37 1 3.0461 -4.6971 -1.8604 38 1 1.8204 -3.5532 -2.4584 39 1 3.3758 -1.8146 -2.1569 40 1 4.7955 -0.1802 -2.3144 41 1 7.0297 1.1817 -1.8459 42 1 5.8920 -3.4055 1.0842 43 1 6.9020 -5.3437 2.2158 44 1 9.2250 -5.9880 1.7202 45 1 10.5421 -4.7017 0.0869 46 1 9.5384 -2.7673 -1.0567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027973821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = 91.323899 kcal Electronic energy + Delta-G solvation = -30337.939848 eV Core-core repulsion = 26422.706267 eV Total energy + Delta-G solvation = -3915.233581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67452 -40.51369 -39.89937 -38.99019 -35.63424 -34.53533 -34.36410 -32.27777 -31.85544 -31.07655 -30.20478 -29.91694 -26.82113 -25.95545 -24.59620 -23.95405 -23.31685 -21.93658 -21.70838 -21.23788 -20.66981 -19.77261 -18.73837 -17.78542 -17.26749 -16.93026 -16.77125 -16.66408 -16.20660 -15.98731 -15.65070 -15.57746 -15.21450 -14.98576 -14.75487 -14.46535 -14.24094 -13.90904 -13.84815 -13.67197 -13.58615 -13.46039 -12.92900 -12.65645 -12.61415 -12.57609 -12.26146 -12.10360 -12.04324 -11.97841 -11.66417 -11.43435 -11.40234 -11.24059 -11.02862 -10.59437 -10.27759 -9.95569 -9.87929 -9.31931 -8.75967 -7.77709 -5.13187 -0.37716 0.35221 0.49385 1.08651 1.45257 1.47441 1.50987 1.55507 2.10637 2.32184 2.53086 2.70380 3.37515 3.50225 3.60657 3.73862 3.89427 3.91806 4.06098 4.09158 4.15918 4.18129 4.32112 4.40234 4.41062 4.47970 4.53754 4.59075 4.65017 4.74510 4.76383 4.89640 4.97945 4.98873 5.10663 5.22401 5.26599 5.33864 5.45863 5.47995 5.50714 5.53322 5.59315 5.68868 5.72853 5.85030 6.04223 6.30293 6.35767 6.55158 7.10101 7.17518 7.86162 8.53679 9.31063 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.004586 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.027738 B = 6103.809398 C = 7749.451072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.055 4.055 3 Si 0.949 3.051 4 H -0.250 1.250 5 H -0.302 1.302 6 H -0.297 1.297 7 C -0.213 4.213 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.136 4.136 12 C -0.111 4.111 13 C 0.140 3.860 14 H 0.011 0.989 15 C 0.118 3.882 16 N -0.677 5.677 17 C 0.575 3.425 18 O -0.560 6.560 19 C 0.018 3.982 20 C -0.212 4.212 21 C 0.050 3.950 22 N -0.291 5.291 23 N -0.306 5.306 24 C 0.113 3.887 25 C -0.092 4.092 26 C -0.114 4.114 27 C -0.105 4.105 28 C -0.108 4.108 29 C -0.115 4.115 30 H 0.244 0.756 31 H 0.038 0.962 32 H 0.002 0.998 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.411 0.589 40 H 0.176 0.824 41 H 0.233 0.767 42 H 0.097 0.903 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -8.767 -3.569 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.248 4.248 3 Si 0.778 3.222 4 H -0.175 1.175 5 H -0.229 1.229 6 H -0.224 1.224 7 C -0.342 4.342 8 H 0.089 0.911 9 N -0.334 5.334 10 C 0.047 3.953 11 C -0.175 4.175 12 C -0.150 4.150 13 C 0.032 3.968 14 H 0.029 0.971 15 C -0.008 4.008 16 N -0.325 5.325 17 C 0.359 3.641 18 O -0.440 6.440 19 C -0.109 4.109 20 C -0.242 4.242 21 C -0.134 4.134 22 N -0.113 5.113 23 N -0.085 5.085 24 C 0.023 3.977 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.127 4.127 29 C -0.135 4.135 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.247 0.753 40 H 0.193 0.807 41 H 0.249 0.751 42 H 0.115 0.885 43 H 0.162 0.838 44 H 0.183 0.817 45 H 0.183 0.817 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.377 -9.484 -2.733 17.439 hybrid contribution -1.126 2.050 -0.281 2.355 sum 13.252 -7.434 -3.014 15.491 Atomic orbital electron populations 1.70124 1.06061 1.24884 1.58232 1.25439 0.96194 1.00106 1.03080 0.85601 0.77376 0.80233 0.79028 1.17469 1.22883 1.22381 1.19079 0.90376 0.83059 1.41698 0.91131 1.44750 1.03732 1.01959 1.82921 1.21311 0.84278 0.92599 0.97111 1.22907 0.99163 0.96458 0.98965 1.22514 0.94475 0.96786 1.01202 1.21466 0.94536 0.86547 0.94257 0.97144 1.22063 0.89377 0.90416 0.98925 1.45529 1.09013 1.18672 1.59298 1.17075 0.82206 0.86167 0.78607 1.90783 1.79644 1.24488 1.49066 1.21455 0.88580 0.97815 1.03071 1.22359 1.02125 0.91775 1.07975 1.24511 0.90945 1.01496 0.96401 1.77399 1.22553 0.89640 1.21703 1.46128 1.10048 1.09808 1.42508 1.17722 0.95058 0.88029 0.96939 1.20994 0.98654 0.97044 0.94561 1.21259 0.96513 0.95584 0.99940 1.21659 0.93248 1.00160 0.97199 1.21406 1.01549 0.93768 0.95937 1.21172 0.92719 0.98544 1.01090 0.94663 0.94326 0.97973 0.92838 0.89649 0.89617 0.89864 0.90095 0.89223 0.75287 0.80680 0.75113 0.88506 0.83795 0.81727 0.81652 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.68 10.42 21.65 0.23 -53.46 16 2 C -0.05 -2.91 5.49 84.86 0.47 -2.44 16 3 Si 0.95 43.07 29.55 68.60 2.03 45.10 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.21 -10.89 8.51 84.03 0.71 -10.17 16 8 H 0.07 3.61 6.72 -2.92 -0.02 3.59 16 9 N -0.61 -28.76 3.13 -668.28 -2.09 -30.85 16 10 C 0.17 7.99 5.50 86.85 0.48 8.47 16 11 C -0.14 -4.78 7.10 32.03 0.23 -4.55 16 12 C -0.11 -3.47 6.48 31.83 0.21 -3.27 16 13 C 0.14 5.42 3.46 45.34 0.16 5.58 16 14 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 15 C 0.12 3.98 5.58 86.38 0.48 4.46 16 16 N -0.68 -23.89 3.38 -466.72 -1.58 -25.47 16 17 C 0.57 21.65 7.11 86.56 0.62 22.26 16 18 O -0.56 -22.81 12.74 -4.16 -0.05 -22.86 16 19 C 0.02 0.66 6.78 40.62 0.28 0.94 16 20 C -0.21 -6.56 10.32 22.47 0.23 -6.33 16 21 C 0.05 1.39 11.96 85.06 1.02 2.41 16 22 N -0.29 -9.63 12.42 -57.33 -0.71 -10.34 16 23 N -0.31 -11.00 3.73 -176.32 -0.66 -11.65 16 24 C 0.11 3.81 5.89 38.14 0.22 4.04 16 25 C -0.09 -3.12 7.38 22.39 0.17 -2.96 16 26 C -0.11 -2.96 10.04 22.25 0.22 -2.74 16 27 C -0.10 -2.06 10.04 22.29 0.22 -1.84 16 28 C -0.11 -2.19 10.04 22.25 0.22 -1.96 16 29 C -0.12 -3.14 9.88 22.39 0.22 -2.92 16 30 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.04 2.09 6.62 -2.39 -0.02 2.07 16 32 H 0.00 0.11 8.13 -2.39 -0.02 0.09 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.09 2.32 7.82 -2.39 -0.02 2.30 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.56 7.55 -2.39 -0.02 2.55 16 38 H 0.09 2.81 8.09 -2.39 -0.02 2.79 16 39 H 0.41 14.13 7.16 -92.71 -0.66 13.47 16 40 H 0.18 4.76 7.47 -2.91 -0.02 4.74 16 41 H 0.23 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.10 3.86 6.76 -2.91 -0.02 3.85 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -70.19 375.73 3.66 -66.53 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.34 Total: 34.03 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.15 Total: 8.96 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -4.81 Total: -131.77 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.19 3.66 -66.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027973821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.858 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds