Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47093 * 239.99625 * 3 2 1 5 5 H 1.48502 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47215 * 119.99604 * 3 2 1 7 7 C 1.38809 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64485 * 14.73693 * 9 7 2 11 11 C 1.54915 * 104.82972 * 155.89103 * 10 9 7 12 12 C 1.55161 * 101.58232 * 37.00817 * 11 10 9 13 13 C 1.47026 * 125.65117 * 194.75614 * 9 7 2 14 14 H 1.08997 * 110.01157 * 300.53301 * 13 9 7 15 15 C 1.53002 * 109.87911 * 61.62408 * 13 9 7 16 16 N 1.46496 * 109.47202 * 182.39732 * 15 13 9 17 17 C 1.34771 * 120.00343 * 185.13256 * 16 15 13 18 18 O 1.21552 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.47853 * 120.00305 * 179.97438 * 17 16 15 20 20 C 1.39623 * 120.11291 * 0.02562 * 19 17 16 21 21 C 1.37977 * 119.98820 * 180.02562 * 20 19 17 22 22 C 1.38265 * 120.22038 * 0.02562 * 21 20 19 23 23 C 1.38922 * 120.22419 * 0.27039 * 22 21 20 24 24 N 1.40210 * 119.99334 * 179.72409 * 23 22 21 25 25 C 1.35218 * 126.05292 * 5.00871 * 24 23 22 26 26 C 1.35320 * 107.71329 * 179.97438 * 25 24 23 27 27 C 1.39925 * 107.93043 * 359.97438 * 26 25 24 28 28 N 1.30880 * 108.24051 * 359.75543 * 27 26 25 29 29 C 1.38601 * 120.00767 * 359.45281 * 23 22 21 30 30 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.37100 * 37.05410 * 10 9 7 32 32 H 1.08997 * 110.46331 * 274.77174 * 10 9 7 33 33 H 1.09006 * 111.00319 * 278.93239 * 11 10 9 34 34 H 1.09008 * 111.00404 * 155.08530 * 11 10 9 35 35 H 1.08996 * 110.71746 * 206.13085 * 12 11 10 36 36 H 1.08998 * 110.71733 * 82.86306 * 12 11 10 37 37 H 1.09001 * 109.47163 * 62.40003 * 15 13 9 38 38 H 1.08998 * 109.47172 * 302.40149 * 15 13 9 39 39 H 0.97002 * 119.99735 * 5.13269 * 16 15 13 40 40 H 1.07996 * 120.00268 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.88714 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.88659 * 180.02562 * 22 21 20 43 43 H 1.08004 * 126.14467 * 359.95692 * 25 24 23 44 44 H 1.07992 * 126.03535 * 180.02562 * 26 25 24 45 45 H 1.07992 * 125.87519 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.10516 * 180.26713 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1072 -2.5529 -0.3047 11 6 -0.2458 -4.0223 -0.7754 12 6 0.7642 -4.7441 0.1554 13 6 1.8976 -3.7077 0.3054 14 1 2.7030 -3.9355 -0.3929 15 6 2.4319 -3.7247 1.7390 16 7 3.0506 -5.0237 2.0142 17 6 3.5003 -5.3071 3.2527 18 8 3.3922 -4.4849 4.1414 19 6 4.1242 -6.6184 3.5306 20 6 4.2492 -7.5647 2.5117 21 6 4.8314 -8.7878 2.7741 22 6 5.2920 -9.0812 4.0443 23 6 5.1667 -8.1486 5.0663 24 7 5.6303 -8.4533 6.3540 25 6 6.3002 -9.5711 6.7148 26 6 6.5669 -9.4820 8.0384 27 6 6.0438 -8.2701 8.5027 28 7 5.4873 -7.6505 7.4930 29 6 4.5886 -6.9148 4.8118 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4067 -1.8701 -1.0998 32 1 -0.7091 -2.3821 0.5878 33 1 0.0433 -4.1265 -1.8212 34 1 -1.2589 -4.3906 -0.6131 35 1 1.1350 -5.6564 -0.3117 36 1 0.3101 -4.9617 1.1221 37 1 1.6096 -3.5591 2.4351 38 1 3.1743 -2.9358 1.8594 39 1 3.1365 -5.6800 1.3051 40 1 3.8894 -7.3397 1.5186 41 1 4.9275 -9.5185 1.9846 42 1 5.7472 -10.0401 4.2436 43 1 6.5731 -10.3884 6.0636 44 1 7.0917 -10.2162 8.6316 45 1 6.0940 -7.9069 9.5185 46 1 4.4944 -6.1870 5.6042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028201390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = 103.518215 kcal Electronic energy + Delta-G solvation = -28146.134610 eV Core-core repulsion = 24231.429814 eV Total energy + Delta-G solvation = -3914.704796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.85179 -40.15754 -38.57172 -37.54550 -34.48281 -33.79448 -32.49454 -31.72349 -30.60366 -29.76279 -29.32827 -28.48740 -25.23820 -24.47774 -23.93496 -23.13634 -21.71032 -20.91267 -20.38395 -20.02608 -19.61067 -18.69690 -17.05866 -16.69895 -16.37889 -16.05159 -15.62789 -15.22318 -15.14982 -14.93196 -14.60127 -14.27972 -14.12465 -13.89086 -13.83294 -13.36910 -13.29105 -13.12535 -12.77112 -12.26988 -12.10301 -11.91793 -11.83441 -11.76306 -11.32968 -11.01472 -10.95766 -10.78023 -10.69097 -10.27704 -10.14614 -10.01321 -9.87357 -9.78649 -9.67985 -9.52156 -9.41116 -8.71539 -8.58911 -8.44074 -6.85846 -5.77985 -3.14945 0.32297 0.71362 1.75200 2.00453 2.43820 2.83991 3.27555 3.41007 3.45431 3.46493 3.65312 4.11821 4.28288 4.44589 4.48929 4.50857 4.70568 4.74310 4.93197 5.05050 5.24183 5.27176 5.31894 5.37621 5.47621 5.48770 5.57172 5.60409 5.78357 5.81838 5.87087 5.95477 6.02919 6.10066 6.21518 6.22668 6.27536 6.43156 6.52263 6.57823 6.66344 6.78085 6.79018 7.02566 7.27724 7.49508 7.59412 7.70084 7.77683 8.23904 8.38082 9.15970 9.76499 10.43567 11.33935 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002193 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.769239 B =12763.812960 C =13780.073470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.714 5.714 17 C 0.548 3.452 18 O -0.531 6.531 19 C -0.100 4.100 20 C -0.096 4.096 21 C -0.098 4.098 22 C -0.122 4.122 23 C 0.149 3.851 24 N -0.322 5.322 25 C 0.051 3.949 26 C -0.262 4.262 27 C 0.053 3.947 28 N -0.284 5.284 29 C -0.062 4.062 30 H 0.255 0.745 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.395 0.605 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.178 0.822 44 H 0.154 0.846 45 H 0.190 0.810 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 -24.675 7.407 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.366 5.366 17 C 0.334 3.666 18 O -0.408 6.408 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.143 4.143 23 C 0.057 3.943 24 N -0.098 5.098 25 C -0.092 4.092 26 C -0.291 4.291 27 C -0.134 4.134 28 N -0.102 5.102 29 C -0.083 4.083 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.229 0.771 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.195 0.805 44 H 0.172 0.828 45 H 0.207 0.793 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.877 -22.716 7.571 25.902 hybrid contribution 1.014 -0.242 0.138 1.051 sum 10.891 -22.959 7.709 26.554 Atomic orbital electron populations 1.69923 1.05029 1.25490 1.55635 1.24922 0.95688 0.97905 1.01272 0.86224 0.78610 0.83037 0.78049 1.21057 1.21541 1.20905 1.18931 0.90367 0.82164 1.44969 0.90685 1.44471 1.06447 1.00987 1.79287 1.21454 0.84781 0.90145 0.98881 1.23011 0.97568 0.99632 0.98519 1.22615 0.97166 0.96935 0.99775 1.21133 0.94539 0.88212 0.91785 0.94475 1.22323 0.97651 0.82312 0.99399 1.46056 1.60711 1.19340 1.10447 1.18138 0.78954 0.86305 0.83215 1.90815 1.56313 1.48821 1.44895 1.19997 1.01279 0.95272 0.93853 1.21446 0.97989 0.93169 0.98954 1.20903 0.97845 0.96973 0.95925 1.20949 1.02194 0.98842 0.92331 1.17413 1.00207 0.95419 0.81245 1.45905 1.42594 1.14904 1.06387 1.22633 0.97416 0.91911 0.97217 1.21619 1.11784 1.01318 0.94376 1.24140 0.96489 0.93870 0.98883 1.77596 1.23775 1.17323 0.91524 1.20998 0.95147 0.94941 0.97228 0.93509 0.90968 0.95557 0.92282 0.92321 0.92414 0.91771 0.91320 0.91273 0.77058 0.84683 0.84186 0.84894 0.80505 0.82820 0.79281 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.58 55.49 0.59 -26.02 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.44 9.76 -15.06 -0.15 -6.58 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.44 3.13 -162.58 -0.51 -14.95 16 10 C 0.17 4.07 5.41 -2.53 -0.01 4.05 16 11 C -0.15 -2.67 7.09 -24.58 -0.17 -2.84 16 12 C -0.13 -2.05 6.10 -24.90 -0.15 -2.21 16 13 C 0.15 2.94 3.22 -66.95 -0.22 2.72 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.08 5.07 -4.04 -0.02 2.06 16 16 N -0.71 -10.69 5.28 -61.25 -0.32 -11.01 16 17 C 0.55 8.98 7.77 -12.33 -0.10 8.88 16 18 O -0.53 -11.12 16.34 5.32 0.09 -11.03 16 19 C -0.10 -1.28 5.87 -104.99 -0.62 -1.90 16 20 C -0.10 -0.86 9.54 -39.16 -0.37 -1.24 16 21 C -0.10 -0.68 10.02 -39.67 -0.40 -1.08 16 22 C -0.12 -0.95 9.45 -39.32 -0.37 -1.32 16 23 C 0.15 1.66 6.67 -83.64 -0.56 1.10 16 24 N -0.32 -3.62 3.80 -10.73 -0.04 -3.66 16 25 C 0.05 0.40 10.79 -17.10 -0.18 0.22 16 26 C -0.26 -1.96 10.81 -39.99 -0.43 -2.39 16 27 C 0.05 0.49 12.03 -17.33 -0.21 0.28 16 28 N -0.28 -3.61 11.87 30.64 0.36 -3.24 16 29 C -0.06 -0.84 9.21 -38.99 -0.36 -1.20 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 32 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.04 7.81 -51.93 -0.41 0.64 16 37 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 38 H 0.07 1.51 7.92 -51.93 -0.41 1.10 16 39 H 0.39 4.49 6.36 -40.82 -0.26 4.23 16 40 H 0.14 0.90 6.40 -52.49 -0.34 0.57 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.62 6.75 -52.49 -0.35 0.26 16 43 H 0.18 0.71 7.06 -52.48 -0.37 0.34 16 44 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.15 2.38 7.29 -52.49 -0.38 2.00 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -35.13 381.69 -9.74 -44.87 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.22 Total: 3.72 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.42 Total: -1.56 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.08 Total: -58.89 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.13 -9.74 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028201390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.388 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds