Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47093 * 239.99625 * 3 2 1 5 5 H 1.48502 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47215 * 119.99604 * 3 2 1 7 7 C 1.38809 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64485 * 14.73693 * 9 7 2 11 11 C 1.54915 * 104.82972 * 155.89103 * 10 9 7 12 12 C 1.55161 * 101.58232 * 37.00817 * 11 10 9 13 13 C 1.47026 * 125.65117 * 194.75614 * 9 7 2 14 14 H 1.08997 * 110.01157 * 300.53301 * 13 9 7 15 15 C 1.53002 * 109.87911 * 61.62408 * 13 9 7 16 16 N 1.46496 * 109.47202 * 182.39732 * 15 13 9 17 17 C 1.34771 * 120.00343 * 185.13256 * 16 15 13 18 18 O 1.21552 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.47853 * 120.00305 * 179.97438 * 17 16 15 20 20 C 1.39623 * 120.11291 * 0.02562 * 19 17 16 21 21 C 1.37977 * 119.98820 * 180.02562 * 20 19 17 22 22 C 1.38265 * 120.22038 * 0.02562 * 21 20 19 23 23 C 1.38922 * 120.22419 * 0.27039 * 22 21 20 24 24 N 1.40210 * 119.99334 * 179.72409 * 23 22 21 25 25 C 1.35218 * 126.05292 * 5.00871 * 24 23 22 26 26 C 1.35320 * 107.71329 * 179.97438 * 25 24 23 27 27 C 1.39925 * 107.93043 * 359.97438 * 26 25 24 28 28 N 1.30880 * 108.24051 * 359.75543 * 27 26 25 29 29 C 1.38601 * 120.00767 * 359.45281 * 23 22 21 30 30 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.37100 * 37.05410 * 10 9 7 32 32 H 1.08997 * 110.46331 * 274.77174 * 10 9 7 33 33 H 1.09006 * 111.00319 * 278.93239 * 11 10 9 34 34 H 1.09008 * 111.00404 * 155.08530 * 11 10 9 35 35 H 1.08996 * 110.71746 * 206.13085 * 12 11 10 36 36 H 1.08998 * 110.71733 * 82.86306 * 12 11 10 37 37 H 1.09001 * 109.47163 * 62.40003 * 15 13 9 38 38 H 1.08998 * 109.47172 * 302.40149 * 15 13 9 39 39 H 0.97002 * 119.99735 * 5.13269 * 16 15 13 40 40 H 1.07996 * 120.00268 * 359.97438 * 20 19 17 41 41 H 1.08000 * 119.88714 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.88659 * 180.02562 * 22 21 20 43 43 H 1.08004 * 126.14467 * 359.95692 * 25 24 23 44 44 H 1.07992 * 126.03535 * 180.02562 * 26 25 24 45 45 H 1.07992 * 125.87519 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.10516 * 180.26713 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1072 -2.5529 -0.3047 11 6 -0.2458 -4.0223 -0.7754 12 6 0.7642 -4.7441 0.1554 13 6 1.8976 -3.7077 0.3054 14 1 2.7030 -3.9355 -0.3929 15 6 2.4319 -3.7247 1.7390 16 7 3.0506 -5.0237 2.0142 17 6 3.5003 -5.3071 3.2527 18 8 3.3922 -4.4849 4.1414 19 6 4.1242 -6.6184 3.5306 20 6 4.2492 -7.5647 2.5117 21 6 4.8314 -8.7878 2.7741 22 6 5.2920 -9.0812 4.0443 23 6 5.1667 -8.1486 5.0663 24 7 5.6303 -8.4533 6.3540 25 6 6.3002 -9.5711 6.7148 26 6 6.5669 -9.4820 8.0384 27 6 6.0438 -8.2701 8.5027 28 7 5.4873 -7.6505 7.4930 29 6 4.5886 -6.9148 4.8118 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4067 -1.8701 -1.0998 32 1 -0.7091 -2.3821 0.5878 33 1 0.0433 -4.1265 -1.8212 34 1 -1.2589 -4.3906 -0.6131 35 1 1.1350 -5.6564 -0.3117 36 1 0.3101 -4.9617 1.1221 37 1 1.6096 -3.5591 2.4351 38 1 3.1743 -2.9358 1.8594 39 1 3.1365 -5.6800 1.3051 40 1 3.8894 -7.3397 1.5186 41 1 4.9275 -9.5185 1.9846 42 1 5.7472 -10.0401 4.2436 43 1 6.5731 -10.3884 6.0636 44 1 7.0917 -10.2162 8.6316 45 1 6.0940 -7.9069 9.5185 46 1 4.4944 -6.1870 5.6042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028201390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 79.897502 kcal Electronic energy + Delta-G solvation = -28147.158881 eV Core-core repulsion = 24231.429814 eV Total energy + Delta-G solvation = -3915.729067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52148 -41.28495 -39.69993 -39.05084 -35.95013 -34.68308 -34.34588 -32.52123 -31.55582 -31.22137 -30.48041 -29.72368 -26.83346 -26.07483 -24.82246 -24.18696 -22.60265 -21.99518 -21.60133 -21.33117 -20.94108 -19.69781 -18.69822 -17.75673 -17.54778 -17.11717 -16.79007 -16.51940 -16.23403 -16.04877 -15.96565 -15.66437 -15.39650 -14.80318 -14.77264 -14.73571 -14.38974 -14.00867 -13.70887 -13.68532 -13.66508 -13.40082 -13.02943 -12.88244 -12.85178 -12.67194 -12.62597 -12.07806 -11.89190 -11.74712 -11.69030 -11.49820 -11.42997 -11.40101 -11.17375 -10.69291 -10.32503 -10.18085 -10.03582 -9.13797 -8.87778 -7.90556 -5.28096 -0.41249 -0.08445 1.09859 1.36451 1.41927 1.45786 1.51033 1.78169 1.85083 2.01488 2.47505 2.74951 3.28863 3.38500 3.60289 3.73873 3.79728 3.90427 3.93230 3.96742 4.05246 4.07923 4.22021 4.26558 4.36826 4.43370 4.53653 4.64972 4.71388 4.73823 4.81778 4.93581 4.99246 5.02998 5.11710 5.13839 5.17978 5.18645 5.23706 5.30719 5.45592 5.53444 5.57248 5.65937 5.69000 5.77600 6.16472 6.21350 6.48446 6.61765 7.07120 7.14042 7.74539 8.40091 9.20157 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002193 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.769239 B =12763.812960 C =13780.073470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.059 0.941 15 C 0.128 3.872 16 N -0.694 5.694 17 C 0.546 3.454 18 O -0.593 6.593 19 C -0.121 4.121 20 C -0.086 4.086 21 C -0.079 4.079 22 C -0.103 4.103 23 C 0.134 3.866 24 N -0.339 5.339 25 C 0.053 3.947 26 C -0.265 4.265 27 C 0.047 3.953 28 N -0.352 5.352 29 C -0.093 4.093 30 H 0.248 0.752 31 H 0.036 0.964 32 H -0.011 1.011 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.418 0.582 40 H 0.165 0.835 41 H 0.191 0.809 42 H 0.176 0.824 43 H 0.222 0.778 44 H 0.186 0.814 45 H 0.211 0.789 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -30.129 5.434 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.076 0.924 15 C 0.001 3.999 16 N -0.346 5.346 17 C 0.334 3.666 18 O -0.474 6.474 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.124 4.124 23 C 0.042 3.958 24 N -0.116 5.116 25 C -0.089 4.089 26 C -0.293 4.293 27 C -0.139 4.139 28 N -0.171 5.171 29 C -0.115 4.115 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.007 0.993 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.257 0.743 40 H 0.182 0.818 41 H 0.208 0.792 42 H 0.193 0.807 43 H 0.239 0.761 44 H 0.203 0.797 45 H 0.227 0.773 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.001 -28.242 5.571 31.188 hybrid contribution 0.453 1.317 0.835 1.624 sum 12.454 -26.925 6.405 30.350 Atomic orbital electron populations 1.70130 1.06261 1.25474 1.57417 1.25696 0.96535 1.01046 1.02159 0.85269 0.77354 0.79274 0.78169 1.19668 1.21913 1.21130 1.19265 0.90760 0.83639 1.43360 0.90528 1.44746 1.06915 1.02169 1.79625 1.21278 0.84030 0.93724 0.96239 1.22872 0.99662 0.95050 0.99504 1.22625 0.95113 0.97565 0.99818 1.21370 0.96325 0.86846 0.91326 0.92382 1.21773 0.95649 0.83557 0.98907 1.45669 1.59895 1.18131 1.10945 1.18826 0.77951 0.87315 0.82514 1.90780 1.58734 1.51166 1.46764 1.19649 1.03501 0.94313 0.95010 1.21786 0.97111 0.92885 0.98764 1.21485 0.95098 0.96537 0.96625 1.21506 1.00240 0.99243 0.91374 1.17688 1.00439 0.95228 0.82409 1.46051 1.43640 1.15794 1.06071 1.23449 0.95747 0.91587 0.98087 1.22067 1.11465 1.01020 0.94734 1.24710 0.95404 0.94544 0.99257 1.77563 1.26523 1.19839 0.93175 1.20756 0.98039 0.95934 0.96741 0.94302 0.94528 0.99327 0.90743 0.89982 0.86990 0.91992 0.94750 0.94841 0.74327 0.81791 0.79206 0.80669 0.76137 0.79718 0.77276 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.80 10.58 21.65 0.23 -57.58 16 2 C -0.06 -3.52 5.47 84.86 0.46 -3.05 16 3 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -13.58 9.76 84.03 0.82 -12.76 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -30.71 3.13 -668.27 -2.09 -32.80 16 10 C 0.17 8.39 5.41 86.86 0.47 8.86 16 11 C -0.13 -4.46 7.09 31.99 0.23 -4.24 16 12 C -0.11 -3.31 6.10 31.78 0.19 -3.12 16 13 C 0.15 5.61 3.22 45.34 0.15 5.75 16 14 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 15 C 0.13 5.08 5.07 86.38 0.44 5.52 16 16 N -0.69 -20.50 5.28 -465.98 -2.46 -22.96 16 17 C 0.55 18.72 7.77 86.79 0.67 19.39 16 18 O -0.59 -27.34 16.34 -3.88 -0.06 -27.41 16 19 C -0.12 -3.09 5.87 -20.10 -0.12 -3.21 16 20 C -0.09 -1.21 9.54 22.54 0.22 -0.99 16 21 C -0.08 -0.63 10.02 22.21 0.22 -0.41 16 22 C -0.10 -1.10 9.45 22.44 0.21 -0.89 16 23 C 0.13 2.86 6.67 38.05 0.25 3.11 16 24 N -0.34 -7.42 3.80 -187.86 -0.71 -8.13 16 25 C 0.05 0.68 10.79 83.50 0.90 1.58 16 26 C -0.26 -3.37 10.81 22.00 0.24 -3.13 16 27 C 0.05 0.87 12.03 85.24 1.03 1.90 16 28 N -0.35 -9.50 11.87 -56.97 -0.68 -10.18 16 29 C -0.09 -2.68 9.21 22.65 0.21 -2.47 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.04 2.01 6.94 -2.39 -0.02 1.99 16 32 H -0.01 -0.62 8.06 -2.39 -0.02 -0.64 16 33 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.06 1.87 7.81 -2.39 -0.02 1.85 16 37 H 0.03 1.59 8.08 -2.39 -0.02 1.57 16 38 H 0.03 1.55 7.92 -2.39 -0.02 1.54 16 39 H 0.42 8.18 6.36 -92.71 -0.59 7.59 16 40 H 0.16 1.25 6.40 -2.91 -0.02 1.23 16 41 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 42 H 0.18 0.37 6.75 -2.91 -0.02 0.35 16 43 H 0.22 0.53 7.06 -2.91 -0.02 0.51 16 44 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 46 H 0.11 3.93 7.29 -2.91 -0.02 3.91 16 Total: -1.00 -89.53 381.69 3.26 -86.26 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.42 Total: 11.72 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.59 Total: 11.84 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -5.71 Total: -131.64 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -89.53 3.26 -86.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028201390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.161 kcal (2) G-P(sol) polarization free energy of solvation -89.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds