Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00092 * 2 1 4 4 H 1.48498 * 109.46853 * 269.99989 * 3 2 1 5 5 H 1.48498 * 109.47006 * 29.99538 * 3 2 1 6 6 H 1.48497 * 109.47027 * 149.99822 * 3 2 1 7 7 C 1.38813 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64950 * 14.73100 * 9 7 2 11 11 C 1.54909 * 104.83051 * 155.89398 * 10 9 7 12 12 C 1.55160 * 101.58401 * 37.00687 * 11 10 9 13 13 C 1.47020 * 125.64520 * 194.75746 * 9 7 2 14 14 H 1.09005 * 110.00916 * 300.52514 * 13 9 7 15 15 C 1.52996 * 109.88634 * 61.61841 * 13 9 7 16 16 N 1.46502 * 109.47432 * 182.39728 * 15 13 9 17 17 C 1.34776 * 119.99743 * 185.13578 * 16 15 13 18 18 O 1.21575 * 120.00540 * 0.02562 * 17 16 15 19 19 C 1.47653 * 119.99612 * 179.97438 * 17 16 15 20 20 C 1.40253 * 120.49423 * 180.02562 * 19 17 16 21 21 C 1.37994 * 118.35594 * 179.97438 * 20 19 17 22 22 C 1.39179 * 119.26215 * 0.02562 * 21 20 19 23 23 N 1.39404 * 119.53475 * 180.02562 * 22 21 20 24 24 C 1.36719 * 125.69028 * 359.66935 * 23 22 21 25 25 C 1.34767 * 108.18951 * 179.83118 * 24 23 22 26 26 C 1.41023 * 107.49884 * 0.42387 * 25 24 23 27 27 C 1.34764 * 107.50464 * 359.73483 * 26 25 24 28 28 N 1.32452 * 120.93342 * 359.97438 * 22 21 20 29 29 C 1.31630 * 121.80038 * 0.02562 * 28 22 21 30 30 H 0.96997 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36631 * 37.05507 * 10 9 7 32 32 H 1.08998 * 110.45702 * 274.77629 * 10 9 7 33 33 H 1.09004 * 111.00157 * 278.93480 * 11 10 9 34 34 H 1.09000 * 111.00532 * 155.08814 * 11 10 9 35 35 H 1.08992 * 110.72284 * 206.13484 * 12 11 10 36 36 H 1.09000 * 110.71321 * 82.86183 * 12 11 10 37 37 H 1.09005 * 109.47168 * 62.39689 * 15 13 9 38 38 H 1.09001 * 109.47317 * 302.39853 * 15 13 9 39 39 H 0.96999 * 119.99988 * 5.13412 * 16 15 13 40 40 H 1.07994 * 120.81784 * 0.02562 * 20 19 17 41 41 H 1.08006 * 120.36950 * 179.97438 * 21 20 19 42 42 H 1.08002 * 125.90370 * 359.97438 * 24 23 22 43 43 H 1.07998 * 126.25142 * 180.19786 * 25 24 23 44 44 H 1.08005 * 126.24930 * 179.69868 * 26 25 24 45 45 H 1.08000 * 125.91208 * 179.97438 * 27 26 25 46 46 H 1.08007 * 119.67729 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1074 -2.5529 -0.3046 11 6 -0.2460 -4.0223 -0.7752 12 6 0.7640 -4.7442 0.1555 13 6 1.8975 -3.7077 0.3054 14 1 2.7029 -3.9355 -0.3930 15 6 2.4319 -3.7247 1.7389 16 7 3.0506 -5.0238 2.0141 17 6 3.5004 -5.3071 3.2526 18 8 3.3924 -4.4848 4.1415 19 6 4.1235 -6.6167 3.5301 20 6 4.5947 -6.9226 4.8152 21 6 5.1688 -8.1597 5.0254 22 6 5.2615 -9.0559 3.9645 23 7 5.8400 -10.3074 4.1707 24 6 6.3528 -10.7641 5.3529 25 6 6.8164 -12.0140 5.1554 26 6 6.5922 -12.3405 3.8020 27 6 5.9944 -11.2806 3.2229 28 7 4.8069 -8.7368 2.7621 29 6 4.2524 -7.5683 2.5177 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4069 -1.8701 -1.0996 32 1 -0.7091 -2.3821 0.5881 33 1 0.0430 -4.1265 -1.8210 34 1 -1.2590 -4.3905 -0.6129 35 1 1.1349 -5.6564 -0.3117 36 1 0.3100 -4.9617 1.1222 37 1 1.6097 -3.5591 2.4352 38 1 3.1744 -2.9359 1.8593 39 1 3.1365 -5.6801 1.3050 40 1 4.5095 -6.2081 5.6204 41 1 5.5429 -8.4293 6.0021 42 1 6.3794 -10.2184 6.2846 43 1 7.2788 -12.6483 5.8972 44 1 6.8526 -13.2702 3.3177 45 1 5.6903 -11.2116 2.1889 46 1 3.8929 -7.3443 1.5241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028210117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 88.671563 kcal Electronic energy + Delta-G solvation = -28067.312678 eV Core-core repulsion = 24151.964084 eV Total energy + Delta-G solvation = -3915.348595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12020 -40.53762 -39.05129 -37.64278 -34.53274 -33.74445 -33.04838 -32.52548 -30.43929 -29.54447 -29.27700 -28.47525 -25.32812 -24.64900 -24.24901 -23.46356 -21.32281 -20.59424 -20.45146 -20.14152 -19.67646 -19.07021 -17.91320 -16.97338 -16.66031 -15.84667 -15.65467 -15.61726 -15.09905 -14.87361 -14.73103 -14.26518 -14.02836 -13.91709 -13.68044 -13.65282 -13.40820 -13.12555 -13.01603 -12.69527 -12.42382 -12.14470 -11.94108 -11.81969 -11.37925 -10.99161 -10.82061 -10.48525 -10.46263 -10.32030 -10.29361 -10.14044 -9.99866 -9.89893 -9.80479 -9.71145 -8.86688 -8.64776 -8.63941 -8.58022 -6.89249 -5.81225 -3.18325 0.01666 0.70052 1.84321 2.15989 2.62466 2.83933 3.18292 3.37265 3.43212 3.44674 3.53904 3.75988 4.16223 4.36234 4.42272 4.44467 4.63676 4.75006 4.92357 5.01740 5.07606 5.20831 5.27674 5.33979 5.40900 5.45010 5.56500 5.63505 5.75230 5.83480 5.84006 5.92509 5.98419 6.07247 6.18348 6.40067 6.46183 6.47136 6.50908 6.60165 6.62250 6.72917 6.92902 6.97850 7.33611 7.46787 7.55692 7.59534 7.74987 8.20048 8.25989 9.12705 9.73222 10.40149 11.30663 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.002037 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.545039 B =13740.798627 C =14442.378672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.151 3.849 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.714 5.714 17 C 0.557 3.443 18 O -0.534 6.534 19 C -0.196 4.196 20 C 0.011 3.989 21 C -0.194 4.194 22 C 0.367 3.633 23 N -0.397 5.397 24 C -0.016 4.016 25 C -0.179 4.179 26 C -0.197 4.197 27 C 0.014 3.986 28 N -0.506 5.506 29 C 0.171 3.829 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.394 0.606 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.171 0.829 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.693 -22.738 7.325 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.342 3.658 18 O -0.412 6.412 19 C -0.202 4.202 20 C -0.016 4.016 21 C -0.216 4.216 22 C 0.139 3.861 23 N -0.073 5.073 24 C -0.141 4.141 25 C -0.203 4.203 26 C -0.220 4.220 27 C -0.112 4.112 28 N -0.218 5.218 29 C 0.012 3.988 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.229 0.771 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.186 0.814 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.189 0.811 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.481 -22.209 7.221 25.205 hybrid contribution 0.429 1.134 0.390 1.273 sum 9.910 -21.076 7.611 24.501 Atomic orbital electron populations 1.69934 1.05031 1.25393 1.55658 1.24929 0.95693 0.97925 1.01271 0.86141 0.78813 0.83354 0.77590 1.21500 1.21571 1.20505 1.18976 0.90394 0.82140 1.44896 0.90618 1.44478 1.06452 1.00988 1.79259 1.21457 0.84758 0.90170 0.98891 1.23008 0.97580 0.99593 0.98556 1.22622 0.97169 0.96971 0.99783 1.21141 0.94586 0.88245 0.91761 0.94414 1.22349 0.97660 0.82141 0.99506 1.46081 1.60627 1.19458 1.10355 1.17861 0.78786 0.85863 0.83288 1.90812 1.56707 1.48758 1.44881 1.21145 1.05962 0.97201 0.95913 1.21621 0.88819 0.94672 0.96440 1.21525 1.05761 0.94493 0.99831 1.18427 0.92133 0.85044 0.90466 1.41490 1.45229 1.10080 1.10459 1.21942 1.05513 0.97133 0.89545 1.21074 1.06199 0.95810 0.97257 1.21106 1.06398 0.99542 0.94991 1.22143 1.05158 0.88302 0.95571 1.66983 1.13470 1.20827 1.20499 1.22798 0.90847 0.86196 0.98993 0.93548 0.90957 0.95544 0.92253 0.92304 0.92357 0.91782 0.91232 0.91173 0.77138 0.82440 0.83461 0.81404 0.83780 0.83884 0.81147 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.21 10.58 55.49 0.59 -25.62 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.31 9.76 -15.06 -0.15 -6.45 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.12 3.13 -162.58 -0.51 -14.63 16 10 C 0.17 3.99 5.41 -2.53 -0.01 3.98 16 11 C -0.15 -2.62 7.08 -24.58 -0.17 -2.80 16 12 C -0.13 -2.00 6.10 -24.90 -0.15 -2.16 16 13 C 0.15 2.83 3.22 -66.96 -0.22 2.61 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 1.97 5.07 -4.04 -0.02 1.95 16 16 N -0.71 -9.87 5.28 -61.31 -0.32 -10.20 16 17 C 0.56 8.15 7.77 -12.42 -0.10 8.05 16 18 O -0.53 -9.98 16.41 5.30 0.09 -9.90 16 19 C -0.20 -2.22 5.89 -104.81 -0.62 -2.84 16 20 C 0.01 0.11 9.70 -38.91 -0.38 -0.27 16 21 C -0.19 -1.69 9.46 -39.32 -0.37 -2.07 16 22 C 0.37 3.78 7.48 -154.57 -1.16 2.63 16 23 N -0.40 -3.88 2.96 -62.65 -0.19 -4.07 16 24 C -0.02 -0.13 10.71 -16.60 -0.18 -0.31 16 25 C -0.18 -1.39 10.86 -39.76 -0.43 -1.82 16 26 C -0.20 -1.63 10.86 -39.76 -0.43 -2.06 16 27 C 0.01 0.13 10.99 -16.60 -0.18 -0.05 16 28 N -0.51 -5.45 9.80 -12.00 -0.12 -5.57 16 29 C 0.17 1.69 10.71 -17.15 -0.18 1.50 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 32 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.00 7.81 -51.93 -0.41 0.60 16 37 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 38 H 0.07 1.46 7.92 -51.93 -0.41 1.05 16 39 H 0.39 4.13 6.39 -40.82 -0.26 3.87 16 40 H 0.16 1.48 7.73 -52.49 -0.41 1.08 16 41 H 0.15 0.87 6.66 -52.48 -0.35 0.52 16 42 H 0.17 0.85 6.96 -52.49 -0.37 0.48 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.17 1.44 8.03 -52.49 -0.42 1.02 16 46 H 0.17 1.22 6.41 -52.48 -0.34 0.88 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -32.97 381.37 -10.82 -43.79 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.24 Total: 3.89 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -4.84 Total: -0.22 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.55 Total: -60.09 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.97 -10.82 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028210117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.464 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds