Wall clock time and date at job start Sat Apr 11 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48497 * 109.46649 * 274.11968 * 3 2 1 5 5 H 1.48500 * 109.47129 * 34.11487 * 3 2 1 6 6 H 1.48495 * 109.47020 * 154.12085 * 3 2 1 7 7 C 1.38813 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00253 * 342.25212 * 7 2 1 9 9 N 1.36938 * 119.99742 * 162.26135 * 7 2 1 10 10 C 1.47429 * 125.64585 * 324.01048 * 9 7 2 11 11 C 1.54907 * 104.83254 * 155.89737 * 10 9 7 12 12 C 1.55160 * 101.58248 * 37.00668 * 11 10 9 13 13 C 1.47013 * 125.64988 * 144.04147 * 9 7 2 14 14 H 1.08998 * 110.01186 * 300.52287 * 13 9 7 15 15 C 1.52995 * 109.88803 * 61.61718 * 13 9 7 16 16 N 1.46505 * 109.46990 * 295.60802 * 15 13 9 17 17 C 1.34773 * 120.00045 * 174.09902 * 16 15 13 18 18 O 1.21548 * 120.00412 * 359.97438 * 17 16 15 19 19 C 1.47867 * 120.00027 * 180.02562 * 17 16 15 20 20 C 1.39610 * 120.10918 * 359.97414 * 19 17 16 21 21 C 1.37981 * 119.98088 * 180.02562 * 20 19 17 22 22 C 1.38260 * 120.21552 * 359.73066 * 21 20 19 23 23 C 1.38901 * 120.22974 * 0.54579 * 22 21 20 24 24 N 1.40262 * 119.99900 * 179.72587 * 23 22 21 25 25 C 1.37095 * 126.47001 * 359.72552 * 24 23 22 26 26 C 1.34654 * 106.83565 * 179.97438 * 25 24 23 27 27 N 1.34128 * 108.19522 * 0.02562 * 26 25 24 28 28 C 1.30525 * 109.34655 * 359.73953 * 27 26 25 29 29 C 1.38581 * 120.01038 * 359.45028 * 23 22 21 30 30 H 0.97004 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36526 * 37.05442 * 10 9 7 32 32 H 1.09000 * 110.45881 * 274.78306 * 10 9 7 33 33 H 1.09001 * 111.00329 * 278.93415 * 11 10 9 34 34 H 1.08996 * 111.00507 * 155.08515 * 11 10 9 35 35 H 1.09001 * 110.72293 * 206.13692 * 12 11 10 36 36 H 1.09001 * 110.71551 * 82.86419 * 12 11 10 37 37 H 1.09000 * 109.47988 * 175.60741 * 15 13 9 38 38 H 1.08998 * 109.47119 * 55.60376 * 15 13 9 39 39 H 0.97004 * 119.99997 * 354.10093 * 16 15 13 40 40 H 1.07996 * 120.01446 * 0.05214 * 20 19 17 41 41 H 1.08003 * 119.88899 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.88766 * 180.27343 * 22 21 20 43 43 H 1.08009 * 126.58163 * 359.97438 * 25 24 23 44 44 H 1.07997 * 125.90216 * 180.02562 * 26 25 24 45 45 H 1.07994 * 125.71635 * 180.25151 * 28 27 26 46 46 H 1.07999 * 120.10941 * 180.25185 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4106 2.0966 -1.3965 5 1 1.4939 2.6260 0.7852 6 1 3.5886 1.4166 0.6111 7 6 2.0102 -1.2022 0.0005 8 1 1.5087 -2.1151 0.2860 9 7 3.3307 -1.2306 -0.3608 10 6 3.9536 -0.3981 -1.4061 11 6 5.4522 -0.3319 -1.0197 12 6 5.6961 -1.7628 -0.4715 13 6 4.3620 -2.0966 0.2289 14 1 4.4459 -1.9019 1.2981 15 6 4.0045 -3.5656 -0.0057 16 7 2.7648 -3.8862 0.7061 17 6 2.1905 -5.0952 0.5484 18 8 2.7008 -5.9195 -0.1848 19 6 0.9389 -5.4185 1.2664 20 6 0.3505 -4.4733 2.1086 21 6 -0.8171 -4.7780 2.7777 22 6 -1.4108 -6.0157 2.6129 23 6 -0.8299 -6.9648 1.7816 24 7 -1.4333 -8.2210 1.6224 25 6 -2.5872 -8.6529 2.2236 26 6 -2.8033 -9.9108 1.7945 27 7 -1.8117 -10.2431 0.9548 28 6 -0.9876 -9.2375 0.8394 29 6 0.3426 -6.6688 1.1049 30 1 -0.4850 0.8401 -0.0004 31 1 3.5172 0.6007 -1.4057 32 1 3.8343 -0.8630 -2.3847 33 1 5.6237 0.4171 -0.2466 34 1 6.0730 -0.1375 -1.8943 35 1 6.5187 -1.7669 0.2437 36 1 5.8888 -2.4604 -1.2866 37 1 4.8103 -4.1994 0.3646 38 1 3.8663 -3.7399 -1.0727 39 1 2.3573 -3.2282 1.2909 40 1 0.8087 -3.5037 2.2362 41 1 -1.2709 -4.0458 3.4293 42 1 -2.3271 -6.2471 3.1358 43 1 -3.2044 -8.0918 2.9098 44 1 -3.6320 -10.5429 2.0776 45 1 -0.0989 -9.2178 0.2261 46 1 0.7935 -7.4041 0.4549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028239802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:40 Heat of formation + Delta-G solvation = 93.295760 kcal Electronic energy + Delta-G solvation = -28982.438249 eV Core-core repulsion = 25067.290174 eV Total energy + Delta-G solvation = -3915.148075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44009 -40.03702 -38.59103 -37.76039 -34.45247 -33.99321 -32.76785 -31.56412 -30.23247 -30.08076 -29.35613 -28.97877 -25.39155 -24.37447 -23.71285 -23.15522 -21.59165 -20.92872 -20.70102 -20.00783 -19.71531 -18.72995 -17.23403 -16.47931 -16.24925 -16.12918 -15.79263 -15.62820 -14.96368 -14.91022 -14.60258 -14.39266 -14.06203 -13.79557 -13.72575 -13.61861 -13.28534 -13.19353 -12.84467 -12.57380 -12.37363 -12.12478 -11.96393 -11.50726 -11.43548 -11.36125 -11.02615 -10.81215 -10.76133 -10.56904 -10.28177 -10.24615 -9.96111 -9.69136 -9.62282 -9.20600 -8.88857 -8.71625 -8.52963 -8.40701 -6.96468 -6.14543 -3.59763 0.60437 0.90341 2.09145 2.47666 2.94517 3.05933 3.21807 3.35735 3.40320 3.51370 3.86555 4.38468 4.47499 4.51597 4.54319 4.69357 4.81387 4.96997 5.01015 5.05070 5.07837 5.20050 5.24692 5.34915 5.41553 5.45725 5.47157 5.65624 5.72149 5.76314 5.85004 5.99517 6.03567 6.16254 6.18051 6.22045 6.23105 6.25986 6.31712 6.44658 6.50409 6.58418 6.75012 6.77574 6.88587 7.07830 7.73787 7.82827 7.92647 8.16088 8.53234 8.65629 9.49886 10.09644 10.99226 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002820 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.045385 B = 9925.705124 C =11140.379782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.890 3.110 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.260 4.260 8 H 0.089 0.911 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.049 0.951 15 C 0.115 3.885 16 N -0.698 5.698 17 C 0.553 3.447 18 O -0.552 6.552 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.095 4.095 22 C -0.111 4.111 23 C 0.115 3.885 24 N -0.406 5.406 25 C -0.055 4.055 26 C -0.026 4.026 27 N -0.489 5.489 28 C 0.191 3.809 29 C -0.077 4.077 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.412 0.588 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.177 0.823 44 H 0.173 0.827 45 H 0.210 0.790 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -9.109 6.773 11.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.165 4.165 3 Si 0.721 3.279 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.388 4.388 8 H 0.106 0.894 9 N -0.327 5.327 10 C -0.007 4.007 11 C -0.175 4.175 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.350 5.350 17 C 0.339 3.661 18 O -0.432 6.432 19 C -0.102 4.102 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.131 4.131 23 C 0.023 3.977 24 N -0.084 5.084 25 C -0.185 4.185 26 C -0.173 4.173 27 N -0.206 5.206 28 C -0.090 4.090 29 C -0.098 4.098 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.252 0.748 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.195 0.805 44 H 0.191 0.809 45 H 0.226 0.774 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.479 -10.253 5.909 11.926 hybrid contribution -0.096 2.228 0.537 2.294 sum 1.382 -8.025 6.447 10.386 Atomic orbital electron populations 1.69806 1.05781 1.26965 1.51429 1.25428 0.95158 0.98001 0.97885 0.86702 0.80115 0.83995 0.77066 1.21521 1.23174 1.19313 1.18613 0.82471 0.93912 1.43794 0.89385 1.44674 1.05207 1.45075 1.37771 1.21891 0.90888 0.95316 0.92597 1.22781 0.97502 0.96754 1.00417 1.22488 0.96415 0.97086 0.99955 1.21285 0.89021 0.89342 0.96827 0.93361 1.21998 0.84692 0.97133 0.97207 1.46127 1.26585 1.14766 1.47546 1.18077 0.83788 0.82556 0.81661 1.90724 1.64693 1.48616 1.39209 1.19866 0.96692 0.94319 0.99315 1.21631 0.95211 0.99009 0.93837 1.21020 0.95142 0.95744 0.99433 1.20999 1.00421 0.93220 0.98479 1.17640 0.94903 0.84465 1.00698 1.43214 1.19767 1.11146 1.34321 1.22762 0.91736 0.98444 1.05600 1.22345 1.00197 0.94630 1.00092 1.70344 1.04450 1.26970 1.18799 1.25359 1.01903 0.83129 0.98624 1.20809 0.93179 0.97175 0.98590 0.92502 0.94080 0.95054 0.91578 0.91495 0.91338 0.91195 0.92578 0.91401 0.74756 0.83988 0.84088 0.84951 0.80543 0.80946 0.77372 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 13.97 55.49 0.78 -24.42 16 2 C 0.04 0.97 5.45 -17.43 -0.10 0.88 16 3 Si 0.89 21.01 24.83 -169.99 -4.22 16.79 16 4 H -0.29 -6.80 6.81 56.52 0.39 -6.41 16 5 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.11 7.06 56.52 0.40 -5.71 16 7 C -0.26 -6.43 9.50 -15.06 -0.14 -6.57 16 8 H 0.09 2.21 5.53 -52.49 -0.29 1.92 16 9 N -0.60 -12.87 2.67 -162.58 -0.43 -13.30 16 10 C 0.12 2.35 6.24 -2.53 -0.02 2.33 16 11 C -0.14 -2.14 7.09 -24.58 -0.17 -2.31 16 12 C -0.12 -1.73 6.48 -24.89 -0.16 -1.89 16 13 C 0.14 2.46 3.30 -66.96 -0.22 2.24 16 14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.12 1.96 5.15 -4.04 -0.02 1.94 16 16 N -0.70 -12.12 4.31 -61.24 -0.26 -12.38 16 17 C 0.55 9.80 7.77 -12.32 -0.10 9.70 16 18 O -0.55 -11.09 16.33 5.32 0.09 -11.00 16 19 C -0.10 -1.49 5.87 -104.99 -0.62 -2.11 16 20 C -0.08 -1.07 9.54 -39.16 -0.37 -1.44 16 21 C -0.09 -1.09 10.02 -39.67 -0.40 -1.49 16 22 C -0.11 -1.22 9.47 -39.33 -0.37 -1.59 16 23 C 0.12 1.44 6.63 -83.63 -0.55 0.88 16 24 N -0.41 -4.93 2.99 -62.14 -0.19 -5.11 16 25 C -0.05 -0.57 10.85 -16.47 -0.18 -0.75 16 26 C -0.03 -0.30 11.85 -17.82 -0.21 -0.51 16 27 N -0.49 -6.65 11.25 -14.48 -0.16 -6.81 16 28 C 0.19 2.39 11.91 -89.64 -1.07 1.33 16 29 C -0.08 -1.07 9.01 -39.00 -0.35 -1.42 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.04 0.90 3.23 -51.93 -0.17 0.73 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 39 H 0.41 7.12 4.34 -40.82 -0.18 6.95 16 40 H 0.14 1.98 6.40 -52.49 -0.34 1.64 16 41 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.13 1.09 6.80 -52.49 -0.36 0.73 16 43 H 0.18 1.27 7.14 -52.48 -0.37 0.89 16 44 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.21 2.12 7.06 -52.49 -0.37 1.75 16 46 H 0.14 1.91 6.36 -52.49 -0.33 1.58 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -32.04 369.59 -9.66 -41.70 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.77 Total: 9.76 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -5.05 Total: -0.78 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.27 Total: -62.03 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.22 Total: 16.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.04 -9.66 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028239802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.998 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds