Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48501 * 109.47176 * 270.00516 * 3 2 1 5 5 H 1.48506 * 109.47159 * 30.00278 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99828 * 3 2 1 7 7 C 1.38808 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99932 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64632 * 359.97369 * 9 7 2 11 11 C 1.54905 * 104.83193 * 155.90618 * 10 9 7 12 12 C 1.55160 * 101.58214 * 37.00658 * 11 10 9 13 13 H 1.09003 * 110.71525 * 83.04292 * 12 11 10 14 14 C 1.53000 * 110.72422 * 206.13217 * 12 11 10 15 15 N 1.46494 * 109.47344 * 182.55991 * 14 12 11 16 16 C 1.34781 * 120.00204 * 180.02562 * 15 14 12 17 17 O 1.21628 * 119.99453 * 359.97438 * 16 15 14 18 18 C 1.47306 * 119.99895 * 179.97438 * 16 15 14 19 19 C 1.36454 * 126.18714 * 180.29990 * 18 16 15 20 20 N 1.36133 * 106.76292 * 180.11372 * 19 18 16 21 21 C 1.40214 * 126.21868 * 179.88578 * 20 19 18 22 22 C 1.38819 * 120.06577 * 179.70771 * 21 20 19 23 23 C 1.38128 * 119.93424 * 179.71529 * 22 21 20 24 24 C 1.38274 * 120.06258 * 0.28497 * 23 22 21 25 25 C 1.38281 * 120.13406 * 0.02562 * 24 23 22 26 26 C 1.38119 * 120.06180 * 0.02562 * 25 24 23 27 27 C 1.36117 * 107.56335 * 359.61431 * 20 19 18 28 28 N 1.30149 * 109.00552 * 0.24625 * 27 20 19 29 29 C 1.47318 * 125.61608 * 180.19523 * 9 7 2 30 30 H 0.96994 * 120.00541 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36598 * 37.06593 * 10 9 7 32 32 H 1.09001 * 110.46032 * 274.79530 * 10 9 7 33 33 H 1.09007 * 111.00678 * 278.94045 * 11 10 9 34 34 H 1.09004 * 111.04014 * 155.09856 * 11 10 9 35 35 H 1.09007 * 109.46674 * 62.56129 * 14 12 11 36 36 H 1.08993 * 109.47206 * 302.56458 * 14 12 11 37 37 H 0.97000 * 119.99846 * 0.02562 * 15 14 12 38 38 H 1.07997 * 126.61590 * 359.96467 * 19 18 16 39 39 H 1.08002 * 120.03655 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.96893 * 180.29919 * 23 22 21 41 41 H 1.08001 * 119.93371 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.96663 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.02799 * 179.97438 * 26 25 24 44 44 H 1.08003 * 125.49284 * 180.26524 * 27 20 19 45 45 H 1.08996 * 110.06167 * 61.67977 * 29 9 7 46 46 H 1.09002 * 109.84752 * 300.42081 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4019 -3.9323 -0.6112 12 6 0.7786 -4.7524 -0.0271 13 1 0.5455 -5.1007 0.9792 14 6 1.1227 -5.9313 -0.9396 15 7 2.1976 -6.7206 -0.3333 16 6 2.6681 -7.8150 -0.9638 17 8 2.1998 -8.1475 -2.0360 18 6 3.7494 -8.6083 -0.3544 19 6 4.3219 -9.7291 -0.8818 20 7 5.2703 -10.1396 0.0044 21 6 6.1042 -11.2584 -0.1336 22 6 7.0361 -11.5568 0.8510 23 6 7.8522 -12.6629 0.7151 24 6 7.7456 -13.4692 -0.4032 25 6 6.8226 -13.1707 -1.3887 26 6 6.0047 -12.0654 -1.2588 27 6 5.2661 -9.2633 1.0459 28 7 4.3608 -8.3533 0.8305 29 6 1.9339 -3.7298 0.0030 30 1 -0.4851 0.8400 0.0004 31 1 -0.5997 -1.7588 -0.6147 32 1 -0.5282 -2.4862 1.0185 33 1 -0.3530 -3.8981 -1.6996 34 1 -1.3591 -4.3332 -0.2776 35 1 1.4498 -5.5565 -1.9095 36 1 0.2411 -6.5585 -1.0709 37 1 2.5708 -6.4556 0.5219 38 1 4.0694 -10.2009 -1.8198 39 1 7.1202 -10.9272 1.7245 40 1 8.5741 -12.8984 1.4831 41 1 8.3850 -14.3333 -0.5076 42 1 6.7419 -13.8021 -2.2612 43 1 5.2843 -11.8326 -2.0291 44 1 5.9104 -9.3146 1.9112 45 1 2.5284 -3.8684 0.9060 46 1 2.5618 -3.8538 -0.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028558010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = 82.602942 kcal Electronic energy + Delta-G solvation = -27584.535690 eV Core-core repulsion = 23668.923940 eV Total energy + Delta-G solvation = -3915.611750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.80704 -39.77408 -39.13143 -37.49496 -34.71446 -34.45549 -32.40934 -31.90634 -30.26554 -30.12180 -29.45057 -28.11831 -25.69400 -24.45999 -24.01756 -23.25241 -22.03355 -21.27953 -20.38750 -19.79846 -19.58503 -18.97822 -17.18639 -16.75568 -16.40953 -16.14248 -15.95481 -15.51576 -15.39977 -15.03523 -14.66425 -14.59024 -14.35318 -14.07414 -13.93402 -13.69095 -13.43527 -13.36563 -12.69845 -12.41803 -12.34859 -11.77521 -11.69846 -11.62271 -11.41943 -11.12291 -10.89513 -10.75323 -10.66710 -10.38241 -10.11329 -9.99770 -9.89279 -9.71038 -9.70719 -9.44746 -9.24870 -8.93446 -8.67997 -8.59230 -6.76610 -5.59504 -3.00656 0.24485 0.64173 1.54201 2.06866 2.17131 3.13897 3.35903 3.44064 3.48725 3.50223 3.50855 3.97476 4.09190 4.14832 4.31036 4.48314 4.53976 4.60564 4.68400 4.86714 5.04003 5.08753 5.20397 5.27451 5.33041 5.35850 5.49608 5.59757 5.67538 5.77402 5.80237 5.82990 5.97768 6.03416 6.12994 6.17584 6.21272 6.43071 6.55702 6.65487 6.66953 6.69912 6.82552 7.00562 7.34321 7.58135 7.68826 7.76092 7.91682 8.34628 8.42576 9.28408 9.89149 10.54655 11.44511 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.001814 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.671876 B =15428.478788 C =16246.976732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.707 5.707 16 C 0.599 3.401 17 O -0.548 6.548 18 C -0.045 4.045 19 C 0.030 3.970 20 N -0.411 5.411 21 C 0.132 3.868 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.126 4.126 25 C -0.092 4.092 26 C -0.131 4.131 27 C 0.195 3.805 28 N -0.452 5.452 29 C 0.141 3.859 30 H 0.251 0.749 31 H 0.107 0.893 32 H 0.011 0.989 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.410 0.590 38 H 0.192 0.808 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.215 0.785 45 H 0.020 0.980 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.913 -30.036 1.047 33.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.357 5.357 16 C 0.385 3.615 17 O -0.427 6.427 18 C -0.173 4.173 19 C -0.105 4.105 20 N -0.089 5.089 21 C 0.040 3.960 22 C -0.151 4.151 23 C -0.111 4.111 24 C -0.144 4.144 25 C -0.110 4.110 26 C -0.151 4.151 27 C -0.087 4.087 28 N -0.169 5.169 29 C 0.015 3.985 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.209 0.791 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.232 0.768 45 H 0.038 0.962 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.328 -29.349 0.802 32.244 hybrid contribution 0.949 0.293 0.086 0.997 sum 14.277 -29.056 0.888 32.386 Atomic orbital electron populations 1.69795 1.04849 1.24665 1.57886 1.24782 0.95740 0.97676 1.02655 0.86072 0.78501 0.83397 0.77537 1.21649 1.21691 1.20791 1.19092 0.90514 0.82533 1.42685 0.90557 1.44582 1.01958 0.99725 1.86829 1.21923 0.84666 0.92513 0.98170 1.23004 0.95501 0.98593 1.00303 1.22440 0.98260 0.93985 0.98674 0.90537 1.21500 0.89070 0.91606 0.96921 1.45876 1.38260 1.26650 1.24948 1.16821 0.80658 0.80169 0.83885 1.90794 1.59917 1.70523 1.21431 1.20712 1.02899 0.98644 0.95031 1.22720 0.92473 0.98050 0.97211 1.43104 1.27307 1.20588 1.17907 1.17881 0.93276 0.87900 0.96966 1.20884 0.96116 0.99363 0.98705 1.21074 0.98259 0.93689 0.98051 1.21311 0.98854 1.00140 0.94131 1.21092 0.94653 0.96032 0.99244 1.20987 1.01557 0.95702 0.96866 1.25307 1.01196 0.87937 0.94299 1.70666 1.07650 1.23549 1.15051 1.21387 0.93467 0.85824 0.97847 0.93799 0.87547 0.97052 0.91835 0.92134 0.91101 0.91519 0.75459 0.79137 0.84796 0.84755 0.85189 0.84792 0.84830 0.76830 0.96178 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.09 55.49 0.56 -26.85 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.96 3.40 -169.84 -0.58 -16.54 16 10 C 0.15 3.77 5.89 -2.53 -0.01 3.76 16 11 C -0.13 -2.60 6.54 -24.58 -0.16 -2.76 16 12 C -0.11 -2.03 2.98 -88.79 -0.26 -2.29 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.13 2.13 5.00 -4.05 -0.02 2.11 16 15 N -0.71 -10.85 5.43 -61.42 -0.33 -11.18 16 16 C 0.60 9.51 7.81 -12.57 -0.10 9.41 16 17 O -0.55 -9.96 16.88 5.25 0.09 -9.88 16 18 C -0.05 -0.62 6.97 -83.09 -0.58 -1.20 16 19 C 0.03 0.33 10.57 -16.29 -0.17 0.16 16 20 N -0.41 -3.73 2.97 -61.90 -0.18 -3.91 16 21 C 0.13 0.95 6.63 -83.59 -0.55 0.39 16 22 C -0.13 -0.69 9.46 -39.41 -0.37 -1.07 16 23 C -0.09 -0.38 10.04 -39.61 -0.40 -0.77 16 24 C -0.13 -0.50 10.04 -39.55 -0.40 -0.90 16 25 C -0.09 -0.42 10.04 -39.61 -0.40 -0.82 16 26 C -0.13 -0.81 9.46 -39.41 -0.37 -1.18 16 27 C 0.20 1.82 11.88 -89.68 -1.07 0.75 16 28 N -0.45 -5.73 10.99 -10.97 -0.12 -5.85 16 29 C 0.14 3.03 6.66 -2.90 -0.02 3.01 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.21 8.05 -51.93 -0.42 0.80 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.23 8.01 -51.92 -0.42 0.81 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.41 6.00 8.11 -40.82 -0.33 5.67 16 38 H 0.19 1.71 7.11 -52.49 -0.37 1.33 16 39 H 0.13 0.45 6.74 -52.49 -0.35 0.10 16 40 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16 41 H 0.13 0.24 8.06 -52.49 -0.42 -0.18 16 42 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.13 0.71 6.78 -52.48 -0.36 0.36 16 44 H 0.22 1.09 7.03 -52.48 -0.37 0.72 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.54 7.73 -51.93 -0.40 0.14 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -35.23 382.82 -11.21 -46.44 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.25 Total: 2.79 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -5.14 Total: 1.66 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.66 Total: -64.33 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.23 -11.21 -46.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028558010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.041 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds