Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00166 * 2 1 4 4 H 1.48500 * 109.46928 * 240.00229 * 3 2 1 5 5 H 1.48502 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47198 * 119.99894 * 3 2 1 7 7 C 1.38813 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64862 * 0.02562 * 9 7 2 11 11 C 1.54328 * 107.26932 * 178.92008 * 10 9 7 12 12 C 1.55148 * 102.94440 * 337.80830 * 11 10 9 13 13 H 1.09006 * 111.00742 * 277.38969 * 12 11 10 14 14 C 1.52999 * 111.00670 * 153.57630 * 12 11 10 15 15 N 1.46498 * 109.47364 * 174.99882 * 14 12 11 16 16 C 1.34782 * 119.99726 * 179.97438 * 15 14 12 17 17 O 1.21622 * 120.00207 * 0.02562 * 16 15 14 18 18 C 1.47307 * 119.99716 * 180.02562 * 16 15 14 19 19 C 1.36447 * 126.18945 * 179.97438 * 18 16 15 20 20 N 1.36135 * 106.76411 * 179.74066 * 19 18 16 21 21 C 1.40221 * 126.21903 * 180.26674 * 20 19 18 22 22 C 1.38819 * 120.06395 * 359.72824 * 21 20 19 23 23 C 1.38126 * 119.93476 * 179.72632 * 22 21 20 24 24 C 1.38277 * 120.06225 * 0.56656 * 23 22 21 25 25 C 1.38271 * 120.13125 * 359.68390 * 24 23 22 26 26 C 1.38128 * 120.06818 * 0.04213 * 25 24 23 27 27 C 1.36115 * 107.56591 * 0.26642 * 20 19 18 28 28 N 1.30149 * 109.00431 * 359.97438 * 27 20 19 29 29 C 1.47425 * 125.64964 * 180.02562 * 9 7 2 30 30 H 0.97000 * 119.99922 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.87772 * 59.50545 * 10 9 7 32 32 H 1.08995 * 109.88334 * 298.33906 * 10 9 7 33 33 H 1.09004 * 110.71517 * 219.44783 * 11 10 9 34 34 H 1.08997 * 110.87271 * 96.24972 * 11 10 9 35 35 H 1.09004 * 109.46560 * 54.99918 * 14 12 11 36 36 H 1.08997 * 109.46917 * 295.00624 * 14 12 11 37 37 H 0.96992 * 120.00292 * 0.02562 * 15 14 12 38 38 H 1.08002 * 126.62025 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.03421 * 359.97438 * 22 21 20 40 40 H 1.07998 * 119.96482 * 180.25324 * 23 22 21 41 41 H 1.08003 * 119.93092 * 179.70356 * 24 23 22 42 42 H 1.08005 * 119.96777 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.03708 * 179.97438 * 26 25 24 44 44 H 1.07999 * 125.49615 * 179.97438 * 27 20 19 45 45 H 1.08997 * 110.37195 * 85.31259 * 29 9 7 46 46 H 1.08996 * 110.36683 * 322.98807 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8523 -4.6560 -0.6117 13 1 0.8579 -4.5966 -1.7001 14 6 1.0371 -6.1008 -0.1434 15 7 2.2066 -6.6832 -0.8062 16 6 2.5648 -7.9560 -0.5450 17 8 1.9170 -8.6212 0.2405 18 6 3.7410 -8.5415 -1.2111 19 6 4.2150 -9.8097 -1.0411 20 7 5.3063 -9.9321 -1.8457 21 6 6.1046 -11.0757 -1.9907 22 6 5.8111 -12.2249 -1.2693 23 6 6.5959 -13.3517 -1.4185 24 6 7.6800 -13.3321 -2.2766 25 6 7.9780 -12.1873 -2.9925 26 6 7.1934 -11.0592 -2.8518 27 6 5.4818 -8.7427 -2.4838 28 7 4.5516 -7.9160 -2.1027 29 6 1.9335 -3.7311 0.0016 30 1 -0.4850 0.8400 0.0004 31 1 -0.5569 -2.0519 -0.8844 32 1 -0.5550 -2.0846 0.9011 33 1 -1.2979 -4.2513 -0.6787 34 1 -0.6341 -4.4207 0.9780 35 1 0.1496 -6.6809 -0.3963 36 1 1.1859 -6.1165 0.9362 37 1 2.7234 -6.1527 -1.4324 38 1 3.8012 -10.5711 -0.3966 39 1 4.9674 -12.2391 -0.5951 40 1 6.3655 -14.2472 -0.8606 41 1 8.2951 -14.2129 -2.3880 42 1 8.8251 -12.1751 -3.6623 43 1 7.4268 -10.1652 -3.4109 44 1 6.2663 -8.5207 -3.1920 45 1 2.1652 -4.0419 1.0203 46 1 2.8337 -3.7406 -0.6128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028558011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 81.416916 kcal Electronic energy + Delta-G solvation = -27556.805656 eV Core-core repulsion = 23641.142476 eV Total energy + Delta-G solvation = -3915.663180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.80742 -39.77498 -39.12990 -37.50616 -34.71726 -34.46015 -32.40126 -31.90697 -30.26709 -30.12677 -29.44779 -28.15343 -25.68257 -24.44804 -24.01816 -23.26082 -22.03097 -21.27932 -20.30566 -19.87775 -19.64235 -18.98171 -17.19060 -16.72496 -16.41257 -16.14262 -15.97832 -15.49766 -15.38205 -15.00085 -14.62070 -14.58154 -14.34972 -14.06589 -13.93386 -13.71574 -13.45123 -13.30263 -12.90768 -12.35071 -12.25359 -11.93329 -11.77623 -11.67825 -11.31417 -11.12140 -10.84516 -10.73022 -10.66324 -10.36879 -10.13032 -10.00440 -9.82446 -9.73059 -9.71120 -9.58110 -9.25044 -8.93734 -8.68190 -8.53610 -6.76076 -5.64830 -2.97856 0.24393 0.64050 1.53915 2.06782 2.17041 3.13799 3.35483 3.44960 3.48761 3.49572 3.50282 3.97483 4.09208 4.14706 4.30978 4.48227 4.55218 4.60480 4.68300 4.86456 5.03940 5.08710 5.20257 5.26671 5.31917 5.33749 5.51930 5.62805 5.67431 5.76341 5.80147 5.82931 5.98893 6.03168 6.11116 6.15197 6.17934 6.43802 6.54608 6.60200 6.63362 6.69328 6.79256 7.01192 7.34352 7.62430 7.70308 7.75762 7.89003 8.32844 8.33988 9.28893 9.89325 10.56005 11.46934 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.001827 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.982167 B =15324.708780 C =16408.133696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.707 5.707 16 C 0.600 3.400 17 O -0.549 6.549 18 C -0.046 4.046 19 C 0.030 3.970 20 N -0.411 5.411 21 C 0.132 3.868 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.126 4.126 25 C -0.092 4.092 26 C -0.131 4.131 27 C 0.195 3.805 28 N -0.451 5.451 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.192 0.808 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.215 0.785 45 H 0.019 0.981 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.393 -29.265 -6.772 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.357 5.357 16 C 0.385 3.615 17 O -0.427 6.427 18 C -0.173 4.173 19 C -0.105 4.105 20 N -0.089 5.089 21 C 0.040 3.960 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.144 4.144 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.087 4.087 28 N -0.169 5.169 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.209 0.791 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.232 0.768 45 H 0.037 0.963 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.746 -28.650 -6.459 32.426 hybrid contribution 0.878 0.398 -0.087 0.968 sum 14.624 -28.252 -6.546 32.479 Atomic orbital electron populations 1.69958 1.04845 1.25033 1.57226 1.24802 0.95730 0.97631 1.02435 0.86196 0.78425 0.83265 0.77858 1.21215 1.21638 1.21236 1.19022 0.90406 0.82489 1.43598 0.90550 1.44475 1.01735 0.99888 1.87160 1.21143 0.84341 0.88172 1.01052 1.22857 0.95425 0.99394 0.99678 1.22612 0.98533 0.91963 1.00591 0.90154 1.21445 0.87059 0.93254 0.97353 1.45872 1.30916 1.12743 1.46165 1.16817 0.82093 0.81802 0.80794 1.90790 1.54241 1.61451 1.36244 1.20712 1.00396 0.92807 1.03394 1.22716 0.89672 0.99749 0.98329 1.43109 1.21882 1.11035 1.32889 1.17882 0.92927 0.85914 0.99300 1.20985 1.01667 0.91912 1.00555 1.21092 0.94402 0.97697 0.97837 1.21310 0.97661 0.98651 0.96814 1.21075 0.99006 0.92150 0.98837 1.20886 0.94563 1.00285 0.99329 1.25311 1.01635 0.80420 1.01349 1.70675 1.04117 1.30170 1.11922 1.21588 0.94079 0.86028 0.96741 0.93780 0.93579 0.93936 0.92018 0.92201 0.91530 0.91200 0.75400 0.79145 0.84835 0.84797 0.85189 0.84753 0.84788 0.76826 0.96324 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.61 -15.92 3.39 -170.06 -0.58 -16.49 16 10 C 0.18 4.41 5.37 -3.06 -0.02 4.39 16 11 C -0.13 -2.55 6.42 -24.90 -0.16 -2.71 16 12 C -0.12 -2.07 3.05 -88.47 -0.27 -2.34 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.13 2.08 5.13 -4.04 -0.02 2.06 16 15 N -0.71 -10.69 5.50 -61.42 -0.34 -11.03 16 16 C 0.60 9.38 7.81 -12.57 -0.10 9.28 16 17 O -0.55 -9.81 16.88 5.26 0.09 -9.72 16 18 C -0.05 -0.61 6.97 -83.09 -0.58 -1.19 16 19 C 0.03 0.33 10.57 -16.29 -0.17 0.15 16 20 N -0.41 -3.70 2.97 -61.90 -0.18 -3.88 16 21 C 0.13 0.94 6.63 -83.59 -0.55 0.39 16 22 C -0.13 -0.80 9.46 -39.41 -0.37 -1.17 16 23 C -0.09 -0.42 10.04 -39.61 -0.40 -0.81 16 24 C -0.13 -0.49 10.04 -39.56 -0.40 -0.89 16 25 C -0.09 -0.37 10.04 -39.61 -0.40 -0.77 16 26 C -0.13 -0.69 9.46 -39.41 -0.37 -1.06 16 27 C 0.20 1.81 11.88 -89.68 -1.07 0.75 16 28 N -0.45 -5.71 10.99 -10.97 -0.12 -5.83 16 29 C 0.14 3.02 6.65 -2.52 -0.02 3.00 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 32 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 37 H 0.41 5.98 8.18 -40.82 -0.33 5.65 16 38 H 0.19 1.68 7.11 -52.49 -0.37 1.31 16 39 H 0.13 0.70 6.78 -52.48 -0.36 0.34 16 40 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.13 0.24 8.06 -52.48 -0.42 -0.19 16 42 H 0.13 0.25 8.06 -52.48 -0.42 -0.17 16 43 H 0.13 0.45 6.74 -52.49 -0.35 0.10 16 44 H 0.22 1.09 7.03 -52.49 -0.37 0.72 16 45 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -35.43 383.73 -11.25 -46.67 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.31 Total: 2.02 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -5.14 Total: 2.03 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.65 Total: -64.32 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.43 -11.25 -46.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028558011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.090 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds