Wall clock time and date at job start Sat Apr 11 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47217 * 299.99981 * 3 2 1 6 6 H 1.48500 * 109.47293 * 59.99978 * 3 2 1 7 7 C 1.38810 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00346 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64548 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.83135 * 155.84004 * 10 9 7 12 12 C 1.55160 * 101.58141 * 37.00635 * 11 10 9 13 13 H 1.09004 * 110.71739 * 83.04322 * 12 11 10 14 14 C 1.52997 * 110.72241 * 206.13403 * 12 11 10 15 15 N 1.46501 * 109.47468 * 184.19768 * 14 12 11 16 16 C 1.34778 * 120.00120 * 175.01491 * 15 14 12 17 17 O 1.21680 * 119.99901 * 5.02516 * 16 15 14 18 18 C 1.46704 * 119.99623 * 185.01716 * 16 15 14 19 19 C 1.36711 * 126.85895 * 4.63142 * 18 16 15 20 20 N 1.33321 * 107.83546 * 180.27355 * 19 18 16 21 21 C 1.30867 * 109.74079 * 359.75595 * 20 19 18 22 22 N 1.34737 * 109.13682 * 359.97438 * 21 20 19 23 23 C 1.40115 * 126.50233 * 179.97438 * 22 21 20 24 24 C 1.38856 * 120.06685 * 303.57285 * 23 22 21 25 25 C 1.38119 * 119.92993 * 179.97438 * 24 23 22 26 26 C 1.38274 * 120.06869 * 0.02562 * 25 24 23 27 27 C 1.38281 * 120.14002 * 0.23444 * 26 25 24 28 28 C 1.38121 * 120.06265 * 359.48475 * 27 26 25 29 29 C 1.47022 * 125.64736 * 179.97438 * 9 7 2 30 30 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36803 * 37.00454 * 10 9 7 32 32 H 1.09004 * 110.36466 * 274.67678 * 10 9 7 33 33 H 1.09001 * 111.00538 * 278.93846 * 11 10 9 34 34 H 1.08998 * 111.03854 * 155.09873 * 11 10 9 35 35 H 1.09009 * 109.46846 * 64.20116 * 14 12 11 36 36 H 1.09000 * 109.47430 * 304.20485 * 14 12 11 37 37 H 0.97004 * 119.99744 * 355.02635 * 15 14 12 38 38 H 1.07995 * 126.07935 * 359.97438 * 19 18 16 39 39 H 1.08002 * 125.43206 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.03060 * 359.97438 * 24 23 22 41 41 H 1.07997 * 119.95909 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.93004 * 179.97438 * 26 25 24 43 43 H 1.07998 * 119.97051 * 179.74146 * 27 26 25 44 44 H 1.08004 * 120.03377 * 180.27243 * 28 27 26 45 45 H 1.08997 * 109.88253 * 61.67591 * 29 9 7 46 46 H 1.08999 * 109.88228 * 300.50796 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4012 -3.9321 -0.6130 12 6 0.7784 -4.7524 -0.0274 13 1 0.5439 -5.1010 0.9784 14 6 1.1238 -5.9310 -0.9397 15 7 2.1706 -6.7427 -0.3139 16 6 2.5658 -7.8946 -0.8914 17 8 2.1200 -8.2150 -1.9773 18 6 3.5336 -8.7619 -0.2107 19 6 4.0544 -8.5856 1.0410 20 7 4.8984 -9.5902 1.2773 21 6 4.9324 -10.3916 0.2432 22 7 4.0990 -9.9231 -0.7062 23 6 3.8565 -10.4989 -1.9603 24 6 4.9108 -10.7368 -2.8322 25 6 4.6685 -11.3050 -4.0676 26 6 3.3779 -11.6365 -4.4366 27 6 2.3252 -11.3959 -3.5728 28 6 2.5617 -10.8333 -2.3337 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5989 -1.7586 -0.6163 32 1 -0.5280 -2.4871 1.0177 33 1 -0.3508 -3.8977 -1.7013 34 1 -1.3589 -4.3330 -0.2809 35 1 1.4800 -5.5556 -1.8991 36 1 0.2349 -6.5422 -1.0961 37 1 2.5792 -6.4511 0.5161 38 1 3.8266 -7.7741 1.7161 39 1 5.5326 -11.2859 0.1636 40 1 5.9189 -10.4777 -2.5446 41 1 5.4881 -11.4898 -4.7462 42 1 3.1910 -12.0803 -5.4033 43 1 1.3177 -11.6521 -3.8655 44 1 1.7397 -10.6496 -1.6577 45 1 2.5277 -3.8647 0.9028 46 1 2.5587 -3.8506 -0.8826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028596180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:52 Heat of formation + Delta-G solvation = 87.400149 kcal Electronic energy + Delta-G solvation = -28503.600480 eV Core-core repulsion = 24588.196753 eV Total energy + Delta-G solvation = -3915.403727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.73658 -39.43275 -39.34986 -37.62356 -34.92913 -34.25087 -32.59886 -31.45117 -30.71419 -29.76894 -29.43918 -28.12420 -25.64836 -24.24719 -23.58019 -23.27838 -22.45108 -21.34304 -20.53190 -19.93152 -19.70242 -18.76368 -17.05439 -16.79488 -16.43538 -16.32426 -15.98851 -15.48203 -15.14269 -14.82292 -14.63216 -14.32654 -14.18484 -14.12909 -13.88198 -13.71275 -13.46778 -13.15118 -12.83007 -12.52553 -12.07259 -11.80086 -11.72498 -11.66212 -11.53714 -10.96109 -10.91103 -10.82292 -10.48956 -10.39325 -10.13689 -10.02070 -9.98890 -9.79792 -9.53872 -9.34386 -9.19543 -9.01351 -8.81647 -8.66383 -6.84559 -5.66678 -3.08298 0.54977 0.97953 1.22842 2.14511 2.56617 3.17834 3.20973 3.31635 3.39244 3.44906 3.47300 4.22068 4.43831 4.45470 4.48578 4.52313 4.71049 4.77463 4.96484 4.97205 5.06777 5.14049 5.20959 5.32471 5.37642 5.51207 5.53157 5.61967 5.67882 5.84997 5.92145 6.00254 6.03018 6.08071 6.08625 6.17083 6.32280 6.35714 6.40199 6.53725 6.55927 6.69440 6.88360 6.88470 7.39613 7.49986 7.56063 7.62314 7.84311 8.09791 8.35241 9.21153 9.82038 10.46471 11.37443 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.002227 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.858355 B =12567.675701 C =13023.069814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.078 0.922 14 C 0.136 3.864 15 N -0.710 5.710 16 C 0.587 3.413 17 O -0.539 6.539 18 C -0.078 4.078 19 C 0.042 3.958 20 N -0.490 5.490 21 C 0.213 3.787 22 N -0.383 5.383 23 C 0.106 3.894 24 C -0.108 4.108 25 C -0.113 4.113 26 C -0.106 4.106 27 C -0.109 4.109 28 C -0.064 4.064 29 C 0.140 3.860 30 H 0.251 0.749 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.404 0.596 38 H 0.184 0.816 39 H 0.213 0.787 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.019 0.981 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -26.103 -4.516 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.096 0.904 14 C 0.013 3.987 15 N -0.361 5.361 16 C 0.373 3.627 17 O -0.417 6.417 18 C -0.193 4.193 19 C -0.111 4.111 20 N -0.207 5.207 21 C -0.067 4.067 22 N -0.061 5.061 23 C 0.016 3.984 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.083 4.083 29 C 0.014 3.986 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.201 0.799 39 H 0.230 0.770 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.037 0.963 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.222 -26.242 -4.692 27.375 hybrid contribution 0.279 1.160 -0.162 1.204 sum 6.501 -25.083 -4.854 26.362 Atomic orbital electron populations 1.69803 1.04891 1.24672 1.57753 1.24791 0.95742 0.97750 1.02463 0.85998 0.78666 0.83593 0.77253 1.20529 1.21731 1.21745 1.19126 0.90532 0.82465 1.42883 0.90467 1.44513 1.01987 0.99728 1.86840 1.21937 0.84683 0.92473 0.98222 1.23009 0.95477 0.98604 1.00317 1.22464 0.98400 0.93888 0.98691 0.90380 1.21511 0.89369 0.91156 0.96617 1.45751 1.40630 1.21783 1.27944 1.16743 0.80464 0.80935 0.84595 1.90844 1.57173 1.73593 1.20055 1.20996 1.07320 0.93221 0.97723 1.22747 0.95870 0.98830 0.93665 1.70200 1.20388 1.04842 1.25297 1.25299 0.96068 1.01163 0.84206 1.42695 1.32596 1.18167 1.12624 1.17627 0.94919 1.01245 0.84625 1.21060 0.98174 0.99875 0.93636 1.21001 0.97441 0.99116 0.95636 1.21308 0.92667 0.98822 0.99664 1.21062 0.99668 0.98857 0.93128 1.21016 0.94890 0.95096 0.97275 1.21346 0.93438 0.85990 0.97796 0.93770 0.87520 0.96951 0.91836 0.92083 0.91110 0.91275 0.76151 0.79945 0.77019 0.85339 0.85062 0.85356 0.85089 0.85511 0.96281 0.95776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.29 3.39 -170.07 -0.58 -15.87 16 10 C 0.15 3.61 5.89 -2.53 -0.01 3.60 16 11 C -0.13 -2.44 6.53 -24.58 -0.16 -2.60 16 12 C -0.12 -1.85 2.98 -88.79 -0.26 -2.11 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.14 1.94 5.02 -4.04 -0.02 1.92 16 15 N -0.71 -9.03 5.44 -61.61 -0.34 -9.37 16 16 C 0.59 8.18 7.77 -12.84 -0.10 8.08 16 17 O -0.54 -8.84 13.90 5.21 0.07 -8.77 16 18 C -0.08 -0.97 6.79 -82.07 -0.56 -1.52 16 19 C 0.04 0.47 11.36 -17.46 -0.20 0.28 16 20 N -0.49 -5.75 11.20 -14.36 -0.16 -5.91 16 21 C 0.21 2.09 12.32 -90.35 -1.11 0.97 16 22 N -0.38 -4.31 2.85 -58.63 -0.17 -4.47 16 23 C 0.11 1.14 5.36 -83.62 -0.45 0.69 16 24 C -0.11 -0.95 9.79 -39.40 -0.39 -1.34 16 25 C -0.11 -0.84 10.04 -39.61 -0.40 -1.24 16 26 C -0.11 -0.79 10.04 -39.55 -0.40 -1.19 16 27 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 28 C -0.06 -0.68 7.77 -39.40 -0.31 -0.99 16 29 C 0.14 2.80 6.66 -3.06 -0.02 2.78 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.12 7.96 -51.92 -0.41 0.71 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.38 7.38 -40.82 -0.30 4.08 16 38 H 0.18 1.60 7.49 -52.49 -0.39 1.20 16 39 H 0.21 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.13 1.47 7.74 -52.48 -0.41 1.06 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -34.03 381.19 -11.33 -45.36 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.41 Total: 3.26 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -5.03 Total: -0.78 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.68 Total: -61.87 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.03 -11.33 -45.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028596180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.760 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds