Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47217 * 299.99981 * 3 2 1 6 6 H 1.48500 * 109.47293 * 59.99978 * 3 2 1 7 7 C 1.38810 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00346 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64548 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.83135 * 155.84004 * 10 9 7 12 12 C 1.55160 * 101.58141 * 37.00635 * 11 10 9 13 13 H 1.09004 * 110.71739 * 83.04322 * 12 11 10 14 14 C 1.52997 * 110.72241 * 206.13403 * 12 11 10 15 15 N 1.46501 * 109.47468 * 184.19768 * 14 12 11 16 16 C 1.34778 * 120.00120 * 175.01491 * 15 14 12 17 17 O 1.21680 * 119.99901 * 5.02516 * 16 15 14 18 18 C 1.46704 * 119.99623 * 185.01716 * 16 15 14 19 19 C 1.36711 * 126.85895 * 4.63142 * 18 16 15 20 20 N 1.33321 * 107.83546 * 180.27355 * 19 18 16 21 21 C 1.30867 * 109.74079 * 359.75595 * 20 19 18 22 22 N 1.34737 * 109.13682 * 359.97438 * 21 20 19 23 23 C 1.40115 * 126.50233 * 179.97438 * 22 21 20 24 24 C 1.38856 * 120.06685 * 303.57285 * 23 22 21 25 25 C 1.38119 * 119.92993 * 179.97438 * 24 23 22 26 26 C 1.38274 * 120.06869 * 0.02562 * 25 24 23 27 27 C 1.38281 * 120.14002 * 0.23444 * 26 25 24 28 28 C 1.38121 * 120.06265 * 359.48475 * 27 26 25 29 29 C 1.47022 * 125.64736 * 179.97438 * 9 7 2 30 30 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36803 * 37.00454 * 10 9 7 32 32 H 1.09004 * 110.36466 * 274.67678 * 10 9 7 33 33 H 1.09001 * 111.00538 * 278.93846 * 11 10 9 34 34 H 1.08998 * 111.03854 * 155.09873 * 11 10 9 35 35 H 1.09009 * 109.46846 * 64.20116 * 14 12 11 36 36 H 1.09000 * 109.47430 * 304.20485 * 14 12 11 37 37 H 0.97004 * 119.99744 * 355.02635 * 15 14 12 38 38 H 1.07995 * 126.07935 * 359.97438 * 19 18 16 39 39 H 1.08002 * 125.43206 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.03060 * 359.97438 * 24 23 22 41 41 H 1.07997 * 119.95909 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.93004 * 179.97438 * 26 25 24 43 43 H 1.07998 * 119.97051 * 179.74146 * 27 26 25 44 44 H 1.08004 * 120.03377 * 180.27243 * 28 27 26 45 45 H 1.08997 * 109.88253 * 61.67591 * 29 9 7 46 46 H 1.08999 * 109.88228 * 300.50796 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4012 -3.9321 -0.6130 12 6 0.7784 -4.7524 -0.0274 13 1 0.5439 -5.1010 0.9784 14 6 1.1238 -5.9310 -0.9397 15 7 2.1706 -6.7427 -0.3139 16 6 2.5658 -7.8946 -0.8914 17 8 2.1200 -8.2150 -1.9773 18 6 3.5336 -8.7619 -0.2107 19 6 4.0544 -8.5856 1.0410 20 7 4.8984 -9.5902 1.2773 21 6 4.9324 -10.3916 0.2432 22 7 4.0990 -9.9231 -0.7062 23 6 3.8565 -10.4989 -1.9603 24 6 4.9108 -10.7368 -2.8322 25 6 4.6685 -11.3050 -4.0676 26 6 3.3779 -11.6365 -4.4366 27 6 2.3252 -11.3959 -3.5728 28 6 2.5617 -10.8333 -2.3337 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5989 -1.7586 -0.6163 32 1 -0.5280 -2.4871 1.0177 33 1 -0.3508 -3.8977 -1.7013 34 1 -1.3589 -4.3330 -0.2809 35 1 1.4800 -5.5556 -1.8991 36 1 0.2349 -6.5422 -1.0961 37 1 2.5792 -6.4511 0.5161 38 1 3.8266 -7.7741 1.7161 39 1 5.5326 -11.2859 0.1636 40 1 5.9189 -10.4777 -2.5446 41 1 5.4881 -11.4898 -4.7462 42 1 3.1910 -12.0803 -5.4033 43 1 1.3177 -11.6521 -3.8655 44 1 1.7397 -10.6496 -1.6577 45 1 2.5277 -3.8647 0.9028 46 1 2.5587 -3.8506 -0.8826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028596180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = 68.027958 kcal Electronic energy + Delta-G solvation = -28504.440521 eV Core-core repulsion = 24588.196753 eV Total energy + Delta-G solvation = -3916.243769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54527 -40.55879 -40.00388 -39.18170 -36.17542 -35.13588 -34.33221 -32.17131 -31.94775 -31.05672 -30.35672 -29.60449 -27.32705 -25.61439 -24.55062 -23.97139 -23.43524 -22.21500 -22.01000 -21.33586 -20.83068 -19.69492 -18.84610 -17.78394 -17.34873 -17.20763 -17.01488 -16.73818 -16.53194 -15.91360 -15.82948 -15.56974 -15.22019 -15.08124 -14.90009 -14.53700 -14.38738 -14.28117 -14.23258 -13.79952 -13.54965 -13.36201 -13.16731 -12.80350 -12.70904 -12.65971 -12.29659 -11.98508 -11.95623 -11.82394 -11.71921 -11.57077 -11.35777 -11.22139 -10.96668 -10.74618 -10.26434 -9.97640 -9.82030 -9.61649 -8.87358 -7.77613 -5.21441 -0.17990 0.33559 0.43662 1.34794 1.46579 1.47064 1.57450 1.73026 2.20430 2.23012 2.49457 2.67877 3.32140 3.45078 3.63605 3.69737 3.81239 3.83471 3.89092 3.94198 3.98118 4.07130 4.17190 4.22126 4.40347 4.44426 4.45482 4.65183 4.67686 4.69969 4.77818 4.85790 4.91844 4.97152 5.05062 5.13439 5.25993 5.32174 5.35457 5.39460 5.41560 5.47784 5.48704 5.67254 5.78830 5.83553 6.15835 6.32548 6.40057 6.73397 7.07500 7.11881 7.79672 8.42716 9.24496 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.002227 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.858355 B =12567.675701 C =13023.069814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.122 4.122 12 C -0.094 4.094 13 H 0.099 0.901 14 C 0.150 3.850 15 N -0.703 5.703 16 C 0.588 3.412 17 O -0.568 6.568 18 C -0.105 4.105 19 C 0.049 3.951 20 N -0.516 5.516 21 C 0.226 3.774 22 N -0.386 5.386 23 C 0.084 3.916 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.105 4.105 27 C -0.118 4.118 28 C -0.085 4.085 29 C 0.136 3.864 30 H 0.247 0.753 31 H 0.070 0.930 32 H -0.009 1.009 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.203 0.797 39 H 0.249 0.751 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.144 0.856 44 H 0.107 0.893 45 H 0.030 0.970 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -28.064 -5.012 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.113 4.113 13 H 0.117 0.883 14 C 0.027 3.973 15 N -0.354 5.354 16 C 0.375 3.625 17 O -0.449 6.449 18 C -0.220 4.220 19 C -0.105 4.105 20 N -0.234 5.234 21 C -0.055 4.055 22 N -0.063 5.063 23 C -0.006 4.006 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.137 4.137 28 C -0.104 4.104 29 C 0.011 3.989 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.220 0.780 39 H 0.265 0.735 40 H 0.160 0.840 41 H 0.178 0.822 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.125 0.875 45 H 0.048 0.952 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.736 -28.231 -5.177 29.725 hybrid contribution -0.140 1.688 -0.032 1.694 sum 7.595 -26.543 -5.209 28.095 Atomic orbital electron populations 1.70057 1.06150 1.24913 1.58775 1.25620 0.96658 1.00945 1.02874 0.85002 0.78081 0.79470 0.76745 1.19208 1.21875 1.21861 1.19478 0.90970 0.83895 1.42239 0.90309 1.44835 1.02865 1.00988 1.86790 1.21736 0.84032 0.94908 0.96671 1.22844 0.97773 0.95422 1.00026 1.22295 0.95731 0.93171 1.00080 0.88297 1.21233 0.90168 0.90622 0.95316 1.45596 1.40283 1.21377 1.28172 1.16933 0.80346 0.81007 0.84224 1.90824 1.58336 1.74284 1.21409 1.20879 1.08428 0.94239 0.98428 1.23114 0.94965 0.99024 0.93378 1.70247 1.21251 1.05590 1.26282 1.26048 0.94974 1.01305 0.83125 1.42820 1.32555 1.17849 1.13112 1.17868 0.95504 1.02262 0.84995 1.21305 0.98272 0.99840 0.93894 1.21408 0.98379 0.97788 0.95390 1.21681 0.92278 0.97907 1.00402 1.21322 1.01008 0.98656 0.92691 1.21008 0.94615 0.96712 0.98064 1.21526 0.94780 0.84701 0.97870 0.94353 0.91159 0.99090 0.91891 0.89138 0.92745 0.90178 0.74968 0.78044 0.73521 0.84035 0.82181 0.82547 0.83813 0.87486 0.95204 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.74 10.09 21.65 0.22 -56.52 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -13.33 10.27 84.03 0.86 -12.46 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -32.13 3.39 -691.99 -2.35 -34.47 16 10 C 0.15 7.35 5.89 86.86 0.51 7.86 16 11 C -0.12 -4.27 6.53 31.99 0.21 -4.06 16 12 C -0.09 -2.85 2.98 -9.61 -0.03 -2.88 16 13 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 14 C 0.15 4.05 5.02 86.38 0.43 4.48 16 15 N -0.70 -17.01 5.44 -467.06 -2.54 -19.55 16 16 C 0.59 16.11 7.77 86.45 0.67 16.78 16 17 O -0.57 -18.71 13.90 -4.28 -0.06 -18.77 16 18 C -0.11 -2.55 6.79 39.97 0.27 -2.28 16 19 C 0.05 1.04 11.36 84.11 0.96 1.99 16 20 N -0.52 -11.35 11.20 -199.34 -2.23 -13.58 16 21 C 0.23 4.05 12.32 180.25 2.22 6.27 16 22 N -0.39 -8.37 2.85 -339.42 -0.97 -9.34 16 23 C 0.08 1.74 5.36 38.11 0.20 1.94 16 24 C -0.11 -1.81 9.79 22.39 0.22 -1.59 16 25 C -0.11 -1.36 10.04 22.25 0.22 -1.14 16 26 C -0.10 -1.31 10.04 22.29 0.22 -1.09 16 27 C -0.12 -1.97 10.04 22.25 0.22 -1.74 16 28 C -0.08 -1.83 7.77 22.39 0.17 -1.66 16 29 C 0.14 5.33 6.66 86.73 0.58 5.91 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 32 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.05 1.68 7.96 -2.38 -0.02 1.66 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.41 8.27 7.38 -92.71 -0.68 7.58 16 38 H 0.20 3.19 7.49 -2.91 -0.02 3.17 16 39 H 0.25 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.11 2.63 7.74 -2.91 -0.02 2.61 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.02 0.81 7.69 -2.39 -0.02 0.79 16 Total: -1.00 -75.90 381.19 2.83 -73.07 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.31 Total: 18.28 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 8.42 Total: 12.90 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -7.87 Total: -133.46 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.06 Total: -18.77 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -75.90 2.83 -73.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028596180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.097 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds